TomoSeq data search

Data search

Results for MligTC455_32794

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_32794

550

11.46

Mlig455_022149

Neo: -

Age: Up-Down-Down

RBM4B

Mlig455_022149 {REF} {Length: 6473} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=37.2]; Unstructured region C-term to UIM in Ataxin3 [PF16619.7, score=20.9]} {Human: ENSG00000173914, RBM4B, RNA binding motif protein 4B, [RH, Score=71.6, Expect=1e-14]; ENSG00000173933, RBM4, RNA binding motif protein 4, [RH, Score=71.6, Expect=2e-14]; ENSG00000239306, RBM14, RNA binding motif protein 14, [RH, Score=69.7, Expect=2e-12]} {Mouse: ENSMUSG00000094936, Rbm4, RNA binding motif protein 4, [RH, Score=71.6, Expect=9e-15]; ENSMUSG00000033760, Rbm4b, RNA binding motif protein 4B, [RH, Score=71.6, Expect=9e-15]; ENSMUSG00000006456, Rbm14, RNA binding motif protein 14, [RH, Score=70.9, Expect=5e-13]} {Celegans: WBGene00004384, rnp-1, RNA-binding protein rnp-1, [Score=50.8, Expect=5e-07]} {Smed: dd_Smed_v6_14010_0_1, dd_Smed_v6_14010_0_1, [Score=49.3, Expect=2e-06]} {RNA1509_22494, RNA1509_28767, RNA1509_44258, RNA1509_48912, RNA1509_50650} {RNA1310_8274.1, RNA1509_28767, RNA1509_44258, RNA1509_48912, RNA1509_50650} {RNA1509_28767, RNA1509_44258, RNA1509_48912, RNA1509_50650, RNA815_8688.1}

Cumulative graph for MligTC455_32794

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	0.194	3.917	0.88142	1.00000
RegionR2	0.036	3.917	0.93760	1.00000
RegionR3	-0.51	3.917	0.17216	0.69816
RegionR4	0.379	3.917	0.37563	0.69953
RegionR5	-0.064	3.917	0.84234	1.00000
RegionR6	0.056	3.917	0.87869	1.00000
RegionR7	-0.071	3.917	0.89287	1.00000
RegionR8	-0.019	3.917	0.97656	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-1.286	3.917	0.51687	1.00000
RegenerationR2	0.049	3.917	0.87235	1.00000
RegenerationR3	0.42	3.917	0.26722	0.70172
RegenerationR4	-0.025	3.917	0.94380	1.00000
RegenerationR5	0.575	3.917	0.06706	0.40823
RegenerationR6	0.276	3.917	0.44550	0.76762
RegenerationBL	0.321	3.917	0.50871	0.87242
RegenerationTP	-0.793	3.917	0.20718	0.64899

Genes with expression patterns similar to MligTC455_32794

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_32794	550	11.46	Mlig455_022149	Neo: - Age: Up-Down-Down	RBM4B	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_022149 {REF} {Length: 6473} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=37.2]; Unstructured region C-term to UIM in Ataxin3 [PF16619.7, score=20.9]} {Human: ENSG00000173914, RBM4B, RNA binding motif protein 4B, [RH, Score=71.6, Expect=1e-14]; ENSG00000173933, RBM4, RNA binding motif protein 4, [RH, Score=71.6, Expect=2e-14]; ENSG00000239306, RBM14, RNA binding motif protein 14, [RH, Score=69.7, Expect=2e-12]} {Mouse: ENSMUSG00000094936, Rbm4, RNA binding motif protein 4, [RH, Score=71.6, Expect=9e-15]; ENSMUSG00000033760, Rbm4b, RNA binding motif protein 4B, [RH, Score=71.6, Expect=9e-15]; ENSMUSG00000006456, Rbm14, RNA binding motif protein 14, [RH, Score=70.9, Expect=5e-13]} {Celegans: WBGene00004384, rnp-1, RNA-binding protein rnp-1, [Score=50.8, Expect=5e-07]} {Smed: dd_Smed_v6_14010_0_1, dd_Smed_v6_14010_0_1, [Score=49.3, Expect=2e-06]} {RNA1509_22494, RNA1509_28767, RNA1509_44258, RNA1509_48912, RNA1509_50650} {RNA1310_8274.1, RNA1509_28767, RNA1509_44258, RNA1509_48912, RNA1509_50650} {RNA1509_28767, RNA1509_44258, RNA1509_48912, RNA1509_50650, RNA815_8688.1}
2.	MligTC455_32795	503	10.47	Mlig455_044864	Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.990		5.911	0.989	0.973	0.998	0.991	0.963	0.997	Mlig455_044864 {REF} {Length: 1174} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_22494} {RNA1310_8655} {RNA815_8688.1}
3.	MligTC455_42349	744	15.51	Mlig455_010690, Mlig455_010789	Neo: - Age: -	SPOP	1.841	0.883	-	-	-	0.958	-	Mlig455_010690 {REF} {Length: 4806} {TRANSSPLICED} {Pfam: BTB/POZ domain [PF00651.33, score=95.7]; MATH domain [PF00917.28, score=33.8]} {Human: ENSG00000121067, SPOP, speckle type BTB/POZ protein, [RH, Score=514, Expect=0.0]; ENSG00000144228, SPOPL, speckle type BTB/POZ protein like, [RH, Score=512, Expect=4e-180]} {Mouse: ENSMUSG00000057522, Spop, speckle-type POZ protein, [RH, Score=514, Expect=0.0]; ENSMUSG00000026771, Spopl, speckle-type POZ protein-like, [RH, Score=508, Expect=2e-178]} {Dmel: FBgn0264493, rdx, roadkill, [RH, Score=523, Expect=0.0]} {Celegans: WBGene00011815, bath-43, BTB and MATH domain-containing protein 43, [RH, Score=489, Expect=2e-170]} {Smed: dd_Smed_v6_10149_0_1, dd_Smed_v6_10149_0_1, [RH, Score=351, Expect=3e-118]} {RNA1509_49062, RNA1509_9921} {RNA1310_14640.1, RNA1509_49062} {RNA1509_49062, RNA815_13360} Mlig455_010789 {REF} {Length: 5787} {TRANSSPLICED} {Pfam: BTB/POZ domain [PF00651.33, score=95.7]; MATH domain [PF00917.28, score=33.8]} {Human: ENSG00000121067, SPOP, speckle type BTB/POZ protein, [RH, Score=514, Expect=0.0]; ENSG00000144228, SPOPL, speckle type BTB/POZ protein like, [RH, Score=512, Expect=4e-180]} {Mouse: ENSMUSG00000057522, Spop, speckle-type POZ protein, [RH, Score=514, Expect=0.0]; ENSMUSG00000026771, Spopl, speckle-type POZ protein-like, [RH, Score=508, Expect=2e-178]} {Dmel: FBgn0264493, rdx, roadkill, [RH, Score=523, Expect=0.0]} {Celegans: WBGene00011815, bath-43, BTB and MATH domain-containing protein 43, [RH, Score=489, Expect=2e-170]} {Smed: dd_Smed_v6_10149_0_1, dd_Smed_v6_10149_0_1, [RH, Score=351, Expect=3e-118]} {RNA1509_9921} {RNA1310_14640.1} {RNA815_13360}
4.	MligTC455_45030	1694	35.29	Mlig455_017197, Mlig455_048168, Mlig455_048190	Neo: - Age: -		1.684	-	-	-	0.732	-	0.952	Mlig455_017197 {REF} {Length: 3576} {TRANSSPLICED} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=50.6]} {Mouse: ENSMUSG00000036437, Npy1r, neuropeptide Y receptor Y1, [Score=48.1, Expect=1e-05]} {Dmel: FBgn0053696, CNMaR, CNMamide Receptor, [Score=72.4, Expect=2e-13]} {Celegans: WBGene00020586, frpr-18, FLP-2 receptor; FMRFamide Peptide Receptor family, [Score=60.8, Expect=7e-10]} {Smed: dd_Smed_v6_6153_0_1, dd_Smed_v6_6153_0_1, [Score=202, Expect=8e-61]} {RNA1509_16025, RNA1509_25170} {RNA1310_10588.1, RNA1509_25170} {RNA1509_25170, RNA815_16182} Mlig455_048168 {REF} {Length: 2612} {TRANSSPLICED} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=53.5]; Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=34.3]; Serpentine type 7TM GPCR chemoreceptor Srv [PF10323.11, score=20.6]} {Dmel: FBgn0053696, CNMaR, CNMamide Receptor, [Score=71.6, Expect=3e-13]} {Celegans: WBGene00020586, frpr-18, FLP-2 receptor; FMRFamide Peptide Receptor family, [Score=63.2, Expect=1e-10]} {Smed: dd_Smed_v6_6153_0_1, dd_Smed_v6_6153_0_1, [Score=189, Expect=3e-56]} {RNA1509_16025} {RNA1310_10588.1} {RNA815_16182} Mlig455_048190 {REF} {Length: 2615} {TRANSSPLICED} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=51.4]; Serpentine type 7TM GPCR chemoreceptor Srv [PF10323.11, score=18.5]} {Mouse: ENSMUSG00000036437, Npy1r, neuropeptide Y receptor Y1, [Score=48.1, Expect=1e-05]} {Dmel: FBgn0053696, CNMaR, CNMamide Receptor, [Score=72.4, Expect=2e-13]} {Celegans: WBGene00020586, frpr-18, FLP-2 receptor; FMRFamide Peptide Receptor family, [Score=59.3, Expect=2e-09]} {Smed: dd_Smed_v6_6153_0_1, dd_Smed_v6_6153_0_1, [Score=202, Expect=4e-61]} {RNA1509_16025} {RNA1310_10588.1, RNA1509_16025} {RNA1509_16025, RNA815_16182}
5.	MligTC455_33390	2547	53.06	Mlig455_042185, Mlig455_059003	Neo: - Age: -	PXYLP1	1.678	-	-	0.723	0.955	-	-	Mlig455_042185 {REF} {Length: 3711} {TRANSSPLICED} {Pfam: Histidine phosphatase superfamily (branch 2) [PF00328.24, score=41.7]} {Human: ENSG00000155893, PXYLP1, 2-phosphoxylose phosphatase 1, [RH, Score=94.0, Expect=7e-20]} {Mouse: ENSMUSG00000043587, Pxylp1, 2-phosphoxylose phosphatase 1, [RH, Score=86.7, Expect=1e-17]} {Dmel: FBgn0031397, CG15385, [RH, Score=57.0, Expect=3e-08]} {Celegans: WBGene00014076, ZK792.1, [RH, Score=62.4, Expect=4e-10]} {Smed: dd_Smed_v6_8632_0_1, dd_Smed_v6_8632_0_1, [Score=50.4, Expect=2e-06]} {RNA1509_7911} {RNA1310_14355, RNA1509_7911} {RNA1509_7911, RNA815_5434} Mlig455_059003 {REF} {Length: 1904} {TRANSSPLICED} {Pfam: Histidine phosphatase superfamily (branch 2) [PF00328.24, score=40.8]} {Human: ENSG00000155893, PXYLP1, 2-phosphoxylose phosphatase 1, [RH, Score=93.2, Expect=1e-19]} {Mouse: ENSMUSG00000043587, Pxylp1, 2-phosphoxylose phosphatase 1, [RH, Score=85.9, Expect=2e-17]} {Dmel: FBgn0031397, CG15385, [RH, Score=54.7, Expect=1e-07]} {Celegans: WBGene00014076, ZK792.1, [RH, Score=61.2, Expect=8e-10]} {Smed: dd_Smed_v6_8632_0_1, dd_Smed_v6_8632_0_1, [Score=51.2, Expect=1e-06]} {RNA1509_7911} {RNA1310_14355} {RNA815_5434}
6.	MligTC455_41938	496	10.33	Mlig455_017543, Mlig455_017575	Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.398 Region-enriched R5: 1.166/0.01278	MAD1L1	0.963	-	-	-	-	-	0.963	Mlig455_017543 {REF} {Length: 3943} {TRANSSPLICED} {Pfam: Mitotic checkpoint protein [PF05557.15, score=133.3]} {Human: ENSG00000002822, MAD1L1, mitotic arrest deficient 1 like 1, [RH, Score=82.8, Expect=9e-17]} {Dmel: FBgn0026326, Mad1, Mitotic arrest-deficient 1, [RH, Score=64.7, Expect=2e-10]} {RNA1509_21631} {RNA1310_5312} {RNA815_1674} Mlig455_017575 {REF} {Length: 3807} {TRANSSPLICED} {Pfam: Mitotic checkpoint protein [PF05557.15, score=132.4]} {Human: ENSG00000002822, MAD1L1, mitotic arrest deficient 1 like 1, [RH, Score=95.1, Expect=2e-19]} {Dmel: FBgn0026326, Mad1, Mitotic arrest-deficient 1, [RH, Score=65.9, Expect=1e-10]} {RNA1509_21631, RNA1509_28340, RNA1509_48431} {RNA1310_5312, RNA1509_28340, RNA1509_48431} {RNA1509_28340, RNA1509_48431, RNA815_1674}
7.	MligTC455_40099	1638	34.12	Mlig455_051041	Neo: Int S/G2/M Age: Down-Up-Up, logFC(26M/2M)=0.282 Regeneration-upregulated BL: 1.263 Regeneration-enriched BL: 1.263	G3BP2	0.962	-	-	-	-	0.962	-	Mlig455_051041 {REF} {Length: 2412} {TRANSSPLICED} {Pfam: Nuclear transport factor 2 (NTF2) domain [PF02136.22, score=86.5]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=43.7]; Orn/Lys/Arg decarboxylase, C-terminal domain [PF03711.17, score=19.1]} {Human: ENSG00000138757, G3BP2, G3BP stress granule assembly factor 2, [RH, Score=162, Expect=4e-44]} {Mouse: ENSMUSG00000029405, G3bp2, GTPase activating protein (SH3 domain) binding protein 2, [RH, Score=162, Expect=4e-44]} {Dmel: FBgn0015778, rin, rasputin, [RH, Score=141, Expect=5e-36]} {Celegans: WBGene00010677, gtbp-1, Ras-Gtpase-activating protein SH3 (Three) domain-Binding Protein, [Score=53.5, Expect=2e-07]} {Smed: dd_Smed_v6_316_0_1, dd_Smed_v6_316_0_1, [RH, Score=132, Expect=2e-34]} {RNA1509_20144, RNA1509_29903, RNA1509_3175} {RNA1310_10257, RNA1509_20144, RNA1509_29903} {RNA1509_20144, RNA1509_29903, RNA815_10851}
8.	MligTC455_25143	837	17.43	Mlig455_006007, Mlig455_066588	Neo: - Age: - Region-enriched R5: 1.312/0.00214		0.961	-	-	-	-	-	0.961	Mlig455_006007 {REF} {Length: 7605} {Pfam: Galactoside-binding lectin [PF00337.24, score=75.9]} {Smed: dd_Smed_v6_10749_0_1, dd_Smed_v6_10749_0_1, [Score=66.6, Expect=8e-11]} {RNA1509_57716} {RNA1310_920.1, RNA1509_57716} {RNA1509_57716, RNA815_1560} Mlig455_066588 {REF} {Length: 7433} {Pfam: Galactoside-binding lectin [PF00337.24, score=77.0]} {Smed: dd_Smed_v6_10749_0_1, dd_Smed_v6_10749_0_1, [Score=67.0, Expect=6e-11]} {RNA1509_57716} {RNA1310_3547.1} {RNA815_1339}
9.	MligTC455_29944	298	6.21	Mlig455_051629	Neo: - Age: -	DDX58	0.952	-	-	-	-	-	0.952	Mlig455_051629 {REF} {Length: 5447} {Pfam: Type III restriction enzyme, res subunit [PF04851.17, score=70.3]; Integrase zinc binding domain [PF17921.3, score=64.0]; Helicase conserved C-terminal domain [PF00271.33, score=54.6]; Integrase core domain [PF00665.28, score=54.6]; DEAD/DEAH box helicase [PF00270.31, score=49.7]; C-terminal domain of RIG-I [PF11648.10, score=40.5]; SWI2/SNF2 ATPase [PF18766.3, score=30.3]; H2C2 zinc finger [PF09337.12, score=19.8]; Integrase core domain [PF13683.8, score=18.3]} {Human: ENSG00000107201, DDX58, DExD/H-box helicase 58, [Score=170, Expect=3e-42]} {Mouse: ENSMUSG00000040296, Ddx58, DEAD (Asp-Glu-Ala-Asp) box polypeptide 58, [Score=157, Expect=9e-39]} {Dmel: FBgn0039016, Dcr-1, Dicer-1, [Score=61.6, Expect=7e-09]} {Celegans: WBGene00001090, drh-1, Dicer Related Helicase; Dicer-related helicase, [Score=113, Expect=4e-25]} {Smed: dd_Smed_v6_3742_0_1, dd_Smed_v6_3742_0_1, [Score=219, Expect=7e-58]} {RNA1509_9178} {RNA1310_2530.1} {RNA815_790.1}
10.	MligTC455_51300	340	7.08	Mlig455_004096	Neo: - Age: -	NCOR1	0.95	-	-	-	-	-	0.950	Mlig455_004096 {REF} {Length: 6894} {TRANSSPLICED} {Pfam: Myb-like DNA-binding domain [PF00249.33, score=23.2]} {Human: ENSG00000141027, NCOR1, nuclear receptor corepressor 1, [Score=179, Expect=2e-44]; ENSG00000196498, NCOR2, nuclear receptor corepressor 2, [Score=175, Expect=3e-43]} {Mouse: ENSMUSG00000018501, Ncor1, nuclear receptor co-repressor 1, [Score=179, Expect=1e-44]; ENSMUSG00000029478, Ncor2, nuclear receptor co-repressor 2, [Score=177, Expect=4e-44]} {Dmel: FBgn0265523, Smr, Smrter, [Score=169, Expect=1e-41]} {Smed: dd_Smed_v6_7709_0_1, dd_Smed_v6_7709_0_1, [Score=184, Expect=1e-46]} {RNA1509_38820, RNA1509_47070, RNA1509_55924, RNA1509_6957, RNA1509_9524} {RNA1310_3476.1, RNA1509_38820, RNA1509_47070, RNA1509_55924, RNA1509_6957, RNA1509_9524} {RNA1509_38820, RNA1509_47070, RNA1509_55924, RNA1509_6957, RNA1509_9524, RNA815_1593}

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