M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_33127

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_33127 1782 37.12 Mlig455_059339

Neo: -

Age: -

 Mlig455_059339 {REF} {Length: 2630} {TRANSSPLICED} {Pfam: HMG (high mobility group) box [PF00505.21, score=38.7]; HMG-box domain [PF09011.12, score=32.9]} {RNA1509_33113, RNA1509_5450} {RNA1310_21659.1, RNA1509_33113} {RNA1509_33113, RNA815_736.1}

Cumulative graph for MligTC455_33127

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.185 5.341 0.78083 1.00000
RegionR2 0.231 5.341 0.36659 0.76087
RegionR3 -0.114 5.341 0.59073 1.00000
RegionR4 -0.21 5.341 0.40636 0.73349
RegionR5 0.022 5.341 0.90747 1.00000
RegionR6 -0.279 5.341 0.21442 0.79281
RegionR7 -0.001 5.341 0.99746 1.00000
RegionR8 0.166 5.341 0.66182 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.737 5.341 0.12022 0.85016
RegenerationR2 -0.13 5.341 0.51316 0.87719
RegenerationR3 0.057 5.341 0.80426 0.98360
RegenerationR4 0.312 5.341 0.18361 0.62469
RegenerationR5 0.101 5.341 0.62805 0.92170
RegenerationR6 0.398 5.341 0.09655 0.38659
RegenerationBL 0.734 5.341 0.00659 0.07877
RegenerationTP -0.139 5.341 0.67268 1.00000


Genes with expression patterns similar to MligTC455_33127

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_33127 1782 37.12 Mlig455_059339

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_059339 {REF} {Length: 2630} {TRANSSPLICED} {Pfam: HMG (high mobility group) box [PF00505.21, score=38.7]; HMG-box domain [PF09011.12, score=32.9]} {RNA1509_33113, RNA1509_5450} {RNA1310_21659.1, RNA1509_33113} {RNA1509_33113, RNA815_736.1}
2. MligTC455_33128 1820 37.91 Mlig455_065593

Neo: -

Age: -

 5.681 1.000 0.998 0.990 0.992 0.987 0.714 Mlig455_065593 {REF} {Length: 2622} {TRANSSPLICED} {Pfam: HMG (high mobility group) box [PF00505.21, score=38.8]; HMG-box domain [PF09011.12, score=32.9]} {RNA1509_16997, RNA1509_20373, RNA1509_22468, RNA1509_29220, RNA1509_5450} {RNA1310_21659.1, RNA1509_16997, RNA1509_20373, RNA1509_22468, RNA1509_29220, RNA1509_5450} {RNA1509_16997, RNA1509_20373, RNA1509_22468, RNA1509_29220, RNA1509_5450, RNA815_736.1}
3. MligTC455_33863 1988 41.42 Mlig455_025793, Mlig455_064361

Neo: -

Age: -

 BTRC 2.411 - - 0.970 0.709 0.732 -

Mlig455_025793 {REF} {Length: 5618} {Pfam: WD domain, G-beta repeat [PF00400.34, score=130.3]; D domain of beta-TrCP [PF12125.10, score=62.3]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=38.2]; F-box-like [PF12937.9, score=37.5]; Nucleoporin Nup120/160 [PF11715.10, score=26.5]; WD40-like domain [PF17005.7, score=22.7]} {Human: ENSG00000166167, BTRC, beta-transducin repeat containing E3 ubiquitin protein ligase, [RH, Score=735, Expect=0.0]; ENSG00000072803, FBXW11, F-box and WD repeat domain containing 11, [RH, Score=714, Expect=0.0]} {Mouse: ENSMUSG00000025217, Btrc, beta-transducin repeat containing protein, [RH, Score=733, Expect=0.0]; ENSMUSG00000020271, Fbxw11, F-box and WD-40 domain protein 11, [RH, Score=716, Expect=0.0]} {Dmel: FBgn0283468, slmb, supernumerary limbs, [RH, Score=742, Expect=0.0]} {Celegans: WBGene00003009, lin-23, F-box/WD repeat-containing protein lin-23, [RH, Score=632, Expect=0.0]} {Smed: dd_Smed_v6_3757_0_1, dd_Smed_v6_3757_0_1, [RH, Score=604, Expect=0.0]} {RNA1509_11648, RNA1509_26322, RNA1509_3057, RNA1509_42851, RNA1509_48589} {RNA1310_10361.1, RNA1509_11648, RNA1509_26322, RNA1509_42851, RNA1509_48589} {RNA1509_11648, RNA1509_26322, RNA1509_42851, RNA1509_48589, RNA815_3571}

Mlig455_064361 {REF} {Length: 5860} {Pfam: WD domain, G-beta repeat [PF00400.34, score=130.3]; D domain of beta-TrCP [PF12125.10, score=62.3]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=38.2]; F-box-like [PF12937.9, score=37.5]; Nucleoporin Nup120/160 [PF11715.10, score=26.5]; WD40-like domain [PF17005.7, score=22.7]} {Human: ENSG00000166167, BTRC, beta-transducin repeat containing E3 ubiquitin protein ligase, [RH, Score=735, Expect=0.0]; ENSG00000072803, FBXW11, F-box and WD repeat domain containing 11, [RH, Score=715, Expect=0.0]} {Mouse: ENSMUSG00000025217, Btrc, beta-transducin repeat containing protein, [RH, Score=734, Expect=0.0]; ENSMUSG00000020271, Fbxw11, F-box and WD-40 domain protein 11, [RH, Score=717, Expect=0.0]} {Dmel: FBgn0283468, slmb, supernumerary limbs, [RH, Score=743, Expect=0.0]} {Celegans: WBGene00003009, lin-23, F-box/WD repeat-containing protein lin-23, [RH, Score=632, Expect=0.0]} {Smed: dd_Smed_v6_3757_0_1, dd_Smed_v6_3757_0_1, [RH, Score=604, Expect=0.0]} {RNA1509_14454, RNA1509_3057, RNA1509_32249} {RNA1310_10361.1, RNA1509_14454, RNA1509_3057, RNA1509_32249} {RNA1509_14454, RNA1509_3057, RNA1509_32249, RNA815_3571}
4. MligTC455_13990 2254 46.96 Mlig455_048153

Neo: -

Age: -

 ATP1A2 1.89 - - - 0.934 0.956 - Mlig455_048153 {REF} {Length: 4295} {TRANSSPLICED} {Pfam: E1-E2 ATPase [PF00122.22, score=154.9]; Cation transporting ATPase, C-terminus [PF00689.23, score=153.3]; Cation transport ATPase (P-type) [PF13246.8, score=75.2]; haloacid dehalogenase-like hydrolase [PF00702.28, score=64.7]; Cation transporter/ATPase, N-terminus [PF00690.28, score=50.3]; haloacid dehalogenase-like hydrolase [PF08282.14, score=21.2]} {Human: ENSG00000018625, ATP1A2, ATPase Na+/K+ transporting subunit alpha 2, [Score=1247, Expect=0.0]; ENSG00000163399, ATP1A1, ATPase Na+/K+ transporting subunit alpha 1, [Score=1234, Expect=0.0]; ENSG00000105409, ATP1A3, ATPase Na+/K+ transporting subunit alpha 3, [Score=1220, Expect=0.0]; ENSG00000285505, AC010616.2, novel protein, ATP1A3-RABAC1 readthrough, [Score=1219, Expect=0.0]} {Mouse: ENSMUSG00000007097, Atp1a2, ATPase, Na+/K+ transporting, alpha 2 polypeptide, [Score=1245, Expect=0.0]; ENSMUSG00000033161, Atp1a1, ATPase, Na+/K+ transporting, alpha 1 polypeptide, [Score=1232, Expect=0.0]; ENSMUSG00000040907, Atp1a3, ATPase, Na+/K+ transporting, alpha 3 polypeptide, [Score=1219, Expect=0.0]; ENSMUSG00000007107, Atp1a4, ATPase, Na+/K+ transporting, alpha 4 polypeptide, [Score=1195, Expect=0.0]} {Dmel: FBgn0002921, Atpalpha, Na pump alpha subunit, [Score=1249, Expect=0.0]} {Celegans: WBGene00001137, eat-6, Sodium/potassium-transporting ATPase subunit alpha, [Score=1233, Expect=0.0]} {Smed: dd_Smed_v6_1179_0_1, dd_Smed_v6_1179_0_1, [Score=1331, Expect=0.0]} {RNA1509_2372} {RNA1310_2794.1} {RNA815_3118}
5. MligTC455_38849 869 18.11 Mlig455_068132, Mlig455_068148

Neo: -

Age: -

 DYNC2LI1 1.85 - - 0.957 0.893 - -

Mlig455_068132 {REF} {Length: 2044} {TRANSSPLICED} {Pfam: Dynein light intermediate chain (DLIC) [PF05783.13, score=48.8]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=26.1]; ADP-ribosylation factor family [PF00025.23, score=25.2]} {Human: ENSG00000138036, DYNC2LI1, dynein cytoplasmic 2 light intermediate chain 1, [RH, Score=249, Expect=1e-79]} {Mouse: ENSMUSG00000024253, Dync2li1, dynein cytoplasmic 2 light intermediate chain 1, [RH, Score=258, Expect=2e-83]} {Dmel: FBgn0032119, CG3769, [RH, Score=144, Expect=3e-39]} {Celegans: WBGene00006960, xbx-1, X-BoX promoter element regulated, [RH, Score=186, Expect=2e-55]} {Smed: dd_Smed_v6_4291_0_1, dd_Smed_v6_4291_0_1, [RH, Score=277, Expect=4e-91]} {RNA1509_9549} {RNA1310_22996} {RNA815_3626.1}

Mlig455_068148 {REF} {Length: 2032} {TRANSSPLICED} {Pfam: Dynein light intermediate chain (DLIC) [PF05783.13, score=48.8]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=26.1]; ADP-ribosylation factor family [PF00025.23, score=25.2]} {Human: ENSG00000138036, DYNC2LI1, dynein cytoplasmic 2 light intermediate chain 1, [RH, Score=249, Expect=1e-79]} {Mouse: ENSMUSG00000024253, Dync2li1, dynein cytoplasmic 2 light intermediate chain 1, [RH, Score=258, Expect=2e-83]} {Dmel: FBgn0032119, CG3769, [RH, Score=144, Expect=3e-39]} {Celegans: WBGene00006960, xbx-1, X-BoX promoter element regulated, [RH, Score=186, Expect=2e-55]} {Smed: dd_Smed_v6_4291_0_1, dd_Smed_v6_4291_0_1, [RH, Score=277, Expect=4e-91]} {RNA1509_9549} {RNA1310_22996} {RNA815_3626.1}
6. MligTC455_24896 589 12.28 Mlig455_042692

Neo: -

Age: -

 PLCB4 1.687 - - 0.964 0.723 - - Mlig455_042692 {REF} {Length: 7356} {TRANSSPLICED} {Pfam: Phosphatidylinositol-specific phospholipase C, Y domain [PF00387.21, score=119.1]; Protein of unknown function (DUF1154) [PF06631.13, score=49.3]; C2 domain [PF00168.32, score=24.4]} {Human: ENSG00000101333, PLCB4, phospholipase C beta 4, [Score=628, Expect=0.0]} {Mouse: ENSMUSG00000039943, Plcb4, phospholipase C, beta 4, [Score=630, Expect=0.0]} {Dmel: FBgn0262738, norpA, no receptor potential A, [Score=544, Expect=0.0]} {Celegans: WBGene00001177, egl-8, 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta egl-8, [Score=558, Expect=0.0]} {Smed: dd_Smed_v6_3221_0_1, dd_Smed_v6_3221_0_1, [Score=651, Expect=0.0]} {RNA1509_34576, RNA1509_47225} {RNA1310_2178, RNA1509_34576} {RNA1509_34576, RNA815_911.1}
7. MligTC455_53608 2624 54.66 Mlig455_066346

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=2.900

 SPAG6 1.674 - 0.714 0.960 - - - Mlig455_066346 {REF} {Length: 1967} {Pfam: Armadillo/beta-catenin-like repeat [PF00514.25, score=130.5]; HEAT repeats [PF13646.8, score=55.3]; non-SMC mitotic condensation complex subunit 1 [PF12717.9, score=52.1]; HEAT repeat [PF02985.24, score=50.8]; HEAT-like repeat [PF13513.8, score=35.3]; Adaptin N terminal region [PF01602.22, score=31.7]; C-terminal domain of two-partite extracellular sensor domain [PF17150.6, score=31.5]; DNA alkylation repair enzyme [PF08713.13, score=30.7]; Proteasome non-ATPase 26S subunit [PF10508.11, score=24.4]; Rapamycin-insensitive companion of mTOR, N-term [PF14664.8, score=19.6]} {Human: ENSG00000077327, SPAG6, sperm associated antigen 6, [RH, Score=863, Expect=0.0]} {Mouse: ENSMUSG00000022783, Spag6l, sperm associated antigen 6-like, [RH, Score=881, Expect=0.0]} {Dmel: FBgn0024889, Kap-alpha1, karyopherin alpha1, [Score=65.5, Expect=5e-11]} {Celegans: WBGene00002074, ima-3, Importin subunit alpha-3, [Score=70.9, Expect=8e-13]} {Smed: dd_Smed_v6_3991_0_1, dd_Smed_v6_3991_0_1, [RH, Score=894, Expect=0.0]} {RNA1509_1649} {RNA1310_12357} {RNA815_5582.1}
8. MligTC455_33864 926 19.29 Mlig455_064384

Neo: -

Age: -

 1.669 - - 0.968 0.701 - - Mlig455_064384 {REF} {Length: 1471} {NoTransDecoderORF} {RNA1509_32249} {RNA1310_11694.1} {RNA815_10459}
9. MligTC455_39440 1122 23.36 Mlig455_018887

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.697

 GGA1 1.664 - - - 0.957 0.707 - Mlig455_018887 {REF} {Length: 3456} {Pfam: VHS domain [PF00790.21, score=117.5]; GAT domain [PF03127.16, score=56.7]; N-terminal extension of GAT domain [PF18308.3, score=54.8]} {Human: ENSG00000100083, GGA1, golgi associated, gamma adaptin ear containing, ARF binding protein 1, [RH, Score=290, Expect=2e-87]; ENSG00000125447, GGA3, golgi associated, gamma adaptin ear containing, ARF binding protein 3, [RH, Score=283, Expect=4e-84]} {Mouse: ENSMUSG00000020740, Gga3, golgi associated, gamma adaptin ear containing, ARF binding protein 3, [RH, Score=292, Expect=1e-88]; ENSMUSG00000033128, Gga1, golgi associated, gamma adaptin ear containing, ARF binding protein 1, [RH, Score=287, Expect=6e-87]} {Dmel: FBgn0030141, Gga, Golgi-localized, gamma-adaptin ear containing, ARF binding protein, [RH, Score=134, Expect=2e-32]} {Celegans: WBGene00000166, apt-9, AdaPTin or adaptin-related protein, [RH, Score=125, Expect=7e-30]} {Smed: dd_Smed_v6_4823_0_1, dd_Smed_v6_4823_0_1, [RH, Score=302, Expect=3e-92]} {RNA1509_2954} {RNA1310_3894.1} {RNA815_4766.1}
10. MligTC455_47459 866 18.03 Mlig455_020310

Neo: -

Age: -

 RALGPS1 0.966 - - 0.966 - - - Mlig455_020310 {REF} {Length: 4259} {TRANSSPLICED} {Pfam: RasGEF domain [PF00617.21, score=166.7]} {Human: ENSG00000136828, RALGPS1, Ral GEF with PH domain and SH3 binding motif 1, [RH, Score=278, Expect=2e-83]; ENSG00000116191, RALGPS2, Ral GEF with PH domain and SH3 binding motif 2, [RH, Score=271, Expect=2e-80]} {Mouse: ENSMUSG00000038831, Ralgps1, Ral GEF with PH domain and SH3 binding motif 1, [RH, Score=276, Expect=2e-82]; ENSMUSG00000026594, Ralgps2, Ral GEF with PH domain and SH3 binding motif 2, [RH, Score=271, Expect=7e-82]} {Dmel: FBgn0034158, CG5522, [RH, Score=281, Expect=5e-83]} {Celegans: WBGene00009100, rgef-1, Rap Guanine nucleotide Exchange Factor homolog, [Score=74.3, Expect=2e-13]} {Smed: dd_Smed_v6_9244_0_1, dd_Smed_v6_9244_0_1, [RH, Score=218, Expect=5e-59]} {RNA1509_3628} {RNA1310_3714.1} {RNA815_2665}
11. MligTC455_17977 2412 50.25 Mlig455_034091

Neo: -

Age: Up-Down-Down

 CNTN4 0.959 - - - 0.959 - - Mlig455_034091 {REF} {Length: 6092} {TRANSSPLICED} {Pfam: Immunoglobulin I-set domain [PF07679.18, score=190.8]; Immunoglobulin domain [PF13927.8, score=190.0]; Immunoglobulin domain [PF00047.27, score=132.0]; Immunoglobulin domain [PF13895.8, score=130.7]; Immunoglobulin V-set domain [PF07686.19, score=107.9]; Fibronectin type III domain [PF00041.23, score=94.5]; CD47 immunoglobulin-like domain [PF08204.13, score=27.4]; Immunoglobulin domain [PF18452.3, score=25.4]; C17orf99 Ig domain [PF17736.3, score=19.2]} {Human: ENSG00000144619, CNTN4, contactin 4, [RH, Score=376, Expect=4e-111]; ENSG00000149972, CNTN5, contactin 5, [RH, Score=370, Expect=5e-109]; ENSG00000113805, CNTN3, contactin 3, [RH, Score=367, Expect=6e-108]} {Mouse: ENSMUSG00000064293, Cntn4, contactin 4, [RH, Score=369, Expect=8e-109]; ENSMUSG00000039488, Cntn5, contactin 5, [RH, Score=364, Expect=3e-106]; ENSMUSG00000030075, Cntn3, contactin 3, [RH, Score=358, Expect=9e-105]} {Dmel: FBgn0037240, Cont, Contactin, [RH, Score=375, Expect=8e-109]} {Celegans: WBGene00002243, lad-2, Immunoglobulin domain-containing protein Y54G2A.25; L1 CAM ADhesion molecule homolog; LAD-2 long isoform, [Score=162, Expect=3e-40]} {Smed: dd_Smed_v6_2673_0_1, dd_Smed_v6_2673_0_1, [RH, Score=701, Expect=0.0]} {RNA1509_1818} {RNA1310_2041.1} {RNA815_268}
12. MligTC455_31847 661 13.78 Mlig455_025501, Mlig455_070503

Neo: -

Age: Down-Up-Down

 KCNMA1 0.958 - - 0.958 - - -

Mlig455_025501 {REF} {Length: 4552} {Pfam: Calcium-activated BK potassium channel alpha subunit [PF03493.20, score=85.2]; Ion channel [PF07885.18, score=43.4]; Ion transport protein [PF00520.33, score=34.6]; TrkA-N domain [PF02254.20, score=22.5]} {Human: ENSG00000156113, KCNMA1, potassium calcium-activated channel subfamily M alpha 1, [Score=488, Expect=4e-154]} {Mouse: ENSMUSG00000063142, Kcnma1, potassium large conductance calcium-activated channel, subfamily M, alpha member 1, [Score=335, Expect=3e-97]} {Dmel: FBgn0003429, slo, slowpoke, [Score=484, Expect=1e-151]} {Celegans: WBGene00004830, slo-1, Calcium-activated potassium channel slo-1, [Score=454, Expect=9e-141]} {Smed: dd_Smed_v6_5509_0_1, dd_Smed_v6_5509_0_1, [Score=476, Expect=1e-149]} {RNA1509_14763} {RNA1310_2844.1} {RNA815_830}

Mlig455_070503 {REF} {Length: 4866} {Pfam: Calcium-activated BK potassium channel alpha subunit [PF03493.20, score=85.2]; Ion channel [PF07885.18, score=43.4]; Ion transport protein [PF00520.33, score=34.6]; TrkA-N domain [PF02254.20, score=22.5]} {Human: ENSG00000156113, KCNMA1, potassium calcium-activated channel subfamily M alpha 1, [Score=488, Expect=4e-154]} {Mouse: ENSMUSG00000063142, Kcnma1, potassium large conductance calcium-activated channel, subfamily M, alpha member 1, [Score=335, Expect=3e-97]} {Dmel: FBgn0003429, slo, slowpoke, [Score=484, Expect=1e-151]} {Celegans: WBGene00004830, slo-1, Calcium-activated potassium channel slo-1, [Score=454, Expect=9e-141]} {Smed: dd_Smed_v6_5509_0_1, dd_Smed_v6_5509_0_1, [Score=476, Expect=1e-149]} {RNA1509_14763} {RNA1310_2844.1, RNA1509_14763} {RNA1509_14763, RNA815_830}
13. MligTC455_46113 3039 63.32 Mlig455_018658, Mlig455_018860

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.389

 VIL1 0.956 - - 0.956 - - -

Mlig455_018658 {REF} {Length: 1291} {TRANSSPLICED} {Pfam: Gelsolin repeat [PF00626.24, score=109.5]} {Human: ENSG00000127831, VIL1, villin 1, [Score=198, Expect=2e-59]} {Mouse: ENSMUSG00000026879, Gsn, gelsolin, [Score=188, Expect=2e-53]; ENSMUSG00000026175, Vil1, villin 1, [Score=187, Expect=5e-53]; ENSMUSG00000025432, Avil, advillin, [Score=186, Expect=2e-52]} {Dmel: FBgn0010225, Gel, Gelsolin, [Score=202, Expect=2e-58]} {Celegans: WBGene00010593, gsnl-1, Gelsolin-like protein 1, [Score=173, Expect=8e-50]} {Smed: dd_Smed_v6_1673_0_1, dd_Smed_v6_1673_0_1, [Score=393, Expect=7e-137]} {RNA1509_33516} {RNA1310_26082} {RNA815_10740.1}

Mlig455_018860 {REF} {Length: 2624} {Pfam: Gelsolin repeat [PF00626.24, score=107.7]} {Human: ENSG00000127831, VIL1, villin 1, [Score=197, Expect=1e-58]} {Mouse: ENSMUSG00000026879, Gsn, gelsolin, [Score=187, Expect=1e-52]; ENSMUSG00000026175, Vil1, villin 1, [Score=186, Expect=3e-52]; ENSMUSG00000025432, Avil, advillin, [Score=185, Expect=6e-52]} {Dmel: FBgn0010225, Gel, Gelsolin, [Score=200, Expect=1e-57]} {Celegans: WBGene00010593, gsnl-1, Gelsolin-like protein 1, [Score=173, Expect=2e-49]} {Smed: dd_Smed_v6_1673_0_1, dd_Smed_v6_1673_0_1, [RH, Score=429, Expect=2e-150]} {RNA1509_15698, RNA1509_33516, RNA1509_34177, RNA1509_48299} {RNA1310_17428.1, RNA1509_15698, RNA1509_33516, RNA1509_34177, RNA1509_48299} {RNA1509_15698, RNA1509_33516, RNA1509_34177, RNA1509_48299, RNA815_10740.1}
14. MligTC455_52286 301 6.27 Mlig455_051314

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.320

 AGO2 0.955 - - 0.955 - - - Mlig455_051314 {REF} {Length: 4274} {Pfam: Piwi domain [PF02171.19, score=369.3]; Mid domain of argonaute [PF16487.7, score=114.6]; N-terminal domain of argonaute [PF16486.7, score=104.8]; PAZ domain [PF02170.24, score=82.1]; Argonaute linker 1 domain [PF08699.12, score=78.7]; Argonaute linker 2 domain [PF16488.7, score=48.4]} {Human: ENSG00000123908, AGO2, argonaute 2, RISC catalytic component, [RH, Score=1254, Expect=0.0]; ENSG00000092847, AGO1, argonaute 1, RISC catalytic component, [RH, Score=1230, Expect=0.0]; ENSG00000126070, AGO3, argonaute 3, RISC catalytic component, [RH, Score=1222, Expect=0.0]; ENSG00000134698, AGO4, argonaute 4, RISC catalytic component, [RH, Score=1199, Expect=0.0]} {Mouse: ENSMUSG00000036698, Ago2, argonaute RISC catalytic subunit 2, [RH, Score=1258, Expect=0.0]; ENSMUSG00000041530, Ago1, argonaute RISC catalytic subunit 1, [RH, Score=1230, Expect=0.0]; ENSMUSG00000028842, Ago3, argonaute RISC catalytic subunit 3, [RH, Score=1221, Expect=0.0]} {Dmel: FBgn0262739, AGO1, Argonaute-1, [RH, Score=1342, Expect=0.0]} {Celegans: WBGene00000105, alg-1, Argonaute-like, [RH, Score=1260, Expect=0.0]} {Smed: dd_Smed_v6_3861_0_1, dd_Smed_v6_3861_0_1, [RH, Score=1449, Expect=0.0]} {RNA1509_3358} {RNA1310_4477.1, RNA1509_3358} {RNA1509_3358, RNA815_1509.1}
15. MligTC455_44888 1432 29.83 Mlig455_018517

Neo: -

Age: -

Region-enriched R8: 1.419/0.01908

 LGR6 0.953 - - - - 0.953 - Mlig455_018517 {REF} {Length: 3076} {Pfam: Leucine rich repeat [PF13855.8, score=105.2]; Leucine Rich repeats (2 copies) [PF12799.9, score=62.5]; BspA type Leucine rich repeat region (6 copies) [PF13306.8, score=30.2]; Leucine-rich repeat [PF14580.8, score=21.2]; Leucine Rich Repeat [PF00560.35, score=19.2]} {Human: ENSG00000133067, LGR6, leucine rich repeat containing G protein-coupled receptor 6, [Score=77.8, Expect=3e-14]; ENSG00000099769, IGFALS, insulin like growth factor binding protein acid labile subunit, [Score=76.6, Expect=6e-14]; ENSG00000131409, LRRC4B, leucine rich repeat containing 4B, [Score=75.9, Expect=1e-13]} {Mouse: ENSMUSG00000050199, Lgr4, leucine-rich repeat-containing G protein-coupled receptor 4, [Score=75.9, Expect=9e-14]; ENSMUSG00000047085, Lrrc4b, leucine rich repeat containing 4B, [Score=75.5, Expect=1e-13]; ENSMUSG00000020105, Lrig3, leucine-rich repeats and immunoglobulin-like domains 3, [Score=72.8, Expect=9e-13]} {Dmel: FBgn0023095, caps, capricious, [Score=73.9, Expect=2e-13]} {Celegans: WBGene00020649, sma-10, Leucine-rich repeats and immunoglobulin-like domains protein sma-10, [Score=74.7, Expect=1e-13]} {Smed: dd_Smed_v6_2769_0_1, dd_Smed_v6_2769_0_1, [Score=105, Expect=1e-23]} {RNA1509_8972} {RNA1310_3884.2, RNA1509_8972} {RNA1509_8972, RNA815_1780}
16. MligTC455_41980 1108 23.09 Mlig455_048223

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.452

Regeneration-depleted BL: -2.044
Regeneration-depleted R6: -1.918

 0.952 - - 0.952 - - - Mlig455_048223 {REF} {Length: 1924} {Pfam: Domain of unknown function (DUF1330) [PF07045.13, score=28.5]} {Smed: dd_Smed_v6_8243_0_1, dd_Smed_v6_8243_0_1, [Score=117, Expect=5e-31]} {RNA1509_5489} {RNA1310_15598} {RNA815_10198.1}
17. MligTC455_18285 1407 29.3 Mlig455_045025

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.279

 XPO1 0.95 - - 0.950 - - - Mlig455_045025 {REF} {Length: 3780} {TRANSSPLICED} {Pfam: CRM1 C terminal [PF08767.13, score=351.6]; Exportin 1-like protein [PF08389.14, score=134.1]; CRM1 / Exportin repeat 2 [PF18784.3, score=119.0]; CRM1 / Exportin repeat 3 [PF18787.3, score=96.9]; Chromosome region maintenance or exportin repeat [PF18777.3, score=62.4]; Importin-beta N-terminal domain [PF03810.21, score=49.9]} {Human: ENSG00000082898, XPO1, exportin 1, [RH, Score=1457, Expect=0.0]} {Mouse: ENSMUSG00000020290, Xpo1, exportin 1, [RH, Score=1454, Expect=0.0]} {Dmel: FBgn0020497, emb, embargoed, [RH, Score=1289, Expect=0.0]} {Celegans: WBGene00002078, xpo-1, EXPOrtin (Nuclear export receptor), [RH, Score=1025, Expect=0.0]} {Smed: dd_Smed_v6_3264_0_1, dd_Smed_v6_3264_0_1, [RH, Score=1411, Expect=0.0]} {RNA1509_19750, RNA1509_1988, RNA1509_20718} {RNA1310_2868, RNA1509_19750, RNA1509_1988, RNA1509_20718} {RNA1509_19750, RNA1509_1988, RNA1509_20718, RNA815_846}
18. MligTC455_44939 631 13.15 Mlig455_056625

Neo: -

Age: -

 0.95 - - 0.950 - - - Mlig455_056625 {REF} {Length: 1958} {TRANSSPLICED} {RNA1509_16551, RNA1509_57483} {RNA1310_29318, RNA1509_57483} {RNA1509_57483, RNA815_12468}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA