M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_33620

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_33620 651 13.55 Mlig455_053546

Neo: -

Age: -

 SCML2 Mlig455_053546 {REF} {Length: 3040} {TRANSSPLICED} {Pfam: mbt repeat [PF02820.20, score=135.9]; SAM domain (Sterile alpha motif) [PF00536.32, score=46.2]; SLED domain [PF12140.10, score=42.9]; SAM domain (Sterile alpha motif) [PF07647.19, score=34.6]; Sterile alpha motif (SAM)/Pointed domain [PF02198.18, score=23.7]} {Human: ENSG00000102098, SCML2, Scm polycomb group protein like 2, [RH, Score=290, Expect=5e-87]; ENSG00000010803, SCMH1, Scm polycomb group protein homolog 1, [RH, Score=287, Expect=2e-86]} {Mouse: ENSMUSG00000000085, Scmh1, sex comb on midleg homolog 1, [RH, Score=341, Expect=9e-107]} {Dmel: FBgn0003334, Scm, Sex comb on midleg, [RH, Score=256, Expect=2e-73]} {Celegans: WBGene00003041, lin-61, [RH, Score=90.1, Expect=1e-18]} {Smed: dd_Smed_v6_10208_0_2, dd_Smed_v6_10208_0_2, [RH, Score=173, Expect=4e-46]} {RNA1509_42002} {RNA1310_6155} {RNA815_20518}

Cumulative graph for MligTC455_33620

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.654 4.042 0.65387 1.00000
RegionR2 0.746 4.042 0.14146 0.46819
RegionR3 0.403 4.042 0.35375 0.88930
RegionR4 0.594 4.042 0.21457 0.50103
RegionR5 0.901 4.042 0.01578 0.08124
RegionR6 0.656 4.042 0.12863 0.64895
RegionR7 -0.413 4.042 0.55560 1.00000
RegionR8 -2.232 4.042 0.04817 0.43036

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.264 4.042 0.89786 1.00000
RegenerationR2 0.841 4.042 0.01208 0.17929
RegenerationR3 1.149 4.042 0.00402 0.11427
RegenerationR4 0.512 4.042 0.20761 0.65471
RegenerationR5 0.59 4.042 0.08679 0.45402
RegenerationR6 0.515 4.042 0.20447 0.54652
RegenerationBL 1.861 4.042 0.00168 0.03215
RegenerationTP 2.419 4.042 0.00061 0.03569


Genes with expression patterns similar to MligTC455_33620

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_33620 651 13.55 Mlig455_053546

Neo: -

Age: -

 SCML2 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_053546 {REF} {Length: 3040} {TRANSSPLICED} {Pfam: mbt repeat [PF02820.20, score=135.9]; SAM domain (Sterile alpha motif) [PF00536.32, score=46.2]; SLED domain [PF12140.10, score=42.9]; SAM domain (Sterile alpha motif) [PF07647.19, score=34.6]; Sterile alpha motif (SAM)/Pointed domain [PF02198.18, score=23.7]} {Human: ENSG00000102098, SCML2, Scm polycomb group protein like 2, [RH, Score=290, Expect=5e-87]; ENSG00000010803, SCMH1, Scm polycomb group protein homolog 1, [RH, Score=287, Expect=2e-86]} {Mouse: ENSMUSG00000000085, Scmh1, sex comb on midleg homolog 1, [RH, Score=341, Expect=9e-107]} {Dmel: FBgn0003334, Scm, Sex comb on midleg, [RH, Score=256, Expect=2e-73]} {Celegans: WBGene00003041, lin-61, [RH, Score=90.1, Expect=1e-18]} {Smed: dd_Smed_v6_10208_0_2, dd_Smed_v6_10208_0_2, [RH, Score=173, Expect=4e-46]} {RNA1509_42002} {RNA1310_6155} {RNA815_20518}
2. MligTC455_39375 773 16.1 Mlig455_052642, Mlig455_065712

Neo: -

Age: -

 0.971 - - - - 0.971 -

Mlig455_052642 {REF} {Length: 4107} {RNA1509_9151} {RNA1310_2304} {RNA815_15356}

Mlig455_065712 {REF} {Length: 4103} {RNA1509_39258, RNA1509_9151} {RNA1310_2304, RNA1509_39258} {RNA1509_39258, RNA815_15356}
3. MligTC455_45309 692 14.41 Mlig455_060249

Neo: -

Age: logFC(26M/2M)=-0.339

 ROGDI 0.962 - - - - 0.962 - Mlig455_060249 {REF} {Length: 2596} {TRANSSPLICED} {Pfam: Rogdi leucine zipper containing protein [PF10259.11, score=79.4]} {Human: ENSG00000067836, ROGDI, rogdi homolog, [RH, Score=82.8, Expect=2e-18]} {Mouse: ENSMUSG00000022540, Rogdi, rogdi homolog, [RH, Score=83.6, Expect=1e-18]} {Dmel: FBgn0036697, rogdi, [RH, Score=104, Expect=4e-26]} {Celegans: WBGene00019196, H14A12.3, Protein rogdi homolog, [RH, Score=68.6, Expect=2e-13]} {Smed: dd_Smed_v6_4687_0_1, dd_Smed_v6_4687_0_1, [RH, Score=110, Expect=1e-29]} {RNA1509_30038, RNA1509_39875} {RNA1310_24614, RNA1509_30038, RNA1509_39875} {RNA1509_30038, RNA1509_39875, RNA815_14684}
4. MligTC455_51412 283 5.89 Mlig455_056615

Neo: -

Age: -

 NT5E 0.962 - - - - 0.962 - Mlig455_056615 {REF} {Length: 3076} {TRANSSPLICED} {Pfam: 5'-nucleotidase, C-terminal domain [PF02872.20, score=106.8]; Calcineurin-like phosphoesterase [PF00149.30, score=33.6]} {Human: ENSG00000135318, NT5E, 5'-nucleotidase ecto, [Score=94.4, Expect=1e-19]} {Mouse: ENSMUSG00000021718, 4933425L06Rik, RIKEN cDNA 4933425L06 gene, [RH, Score=379, Expect=2e-123]} {Dmel: FBgn0033538, CG11883, [RH, Score=452, Expect=3e-149]} {Smed: dd_Smed_v6_3474_0_1, dd_Smed_v6_3474_0_1, [RH, Score=466, Expect=2e-158]} {RNA1509_8106} {RNA1310_7602.1} {RNA815_2785.1}
5. MligTC455_21913 2771 57.74 Mlig455_041262, Mlig455_053075

Neo: -

Age: -

 NOVA1 0.959 - - 0.959 - - -

Mlig455_041262 {REF} {Length: 5206} {Pfam: KH domain [PF00013.31, score=141.0]; KH domain [PF07650.19, score=44.2]; KH domain [PF13083.8, score=20.9]; KH-like RNA-binding domain [PF16005.7, score=19.9]} {Human: ENSG00000139910, NOVA1, NOVA alternative splicing regulator 1, [RH, Score=237, Expect=2e-71]} {Mouse: ENSMUSG00000021047, Nova1, neuro-oncological ventral antigen 1, [RH, Score=224, Expect=3e-66]} {Dmel: FBgn0261552, ps, pasilla, [RH, Score=290, Expect=5e-91]} {Celegans: WBGene00013347, nova-1, NOVA kh (KH) homology domain homolog, [RH, Score=133, Expect=5e-34]} {Smed: dd_Smed_v6_5632_0_1, dd_Smed_v6_5632_0_1, [RH, Score=317, Expect=1e-100]} {RNA1509_10378, RNA1509_18950, RNA1509_23652, RNA1509_26658, RNA1509_37526, RNA1509_4143} {RNA1310_11244, RNA1509_10378, RNA1509_18950, RNA1509_23652, RNA1509_26658, RNA1509_37526, RNA1509_4143} {RNA1509_10378, RNA1509_18950, RNA1509_23652, RNA1509_26658, RNA1509_37526, RNA1509_4143, RNA815_9593.1}

Mlig455_053075 {REF} {Length: 4209} {Pfam: KH domain [PF00013.31, score=138.8]; KH domain [PF07650.19, score=44.2]; KH domain [PF13083.8, score=20.6]; KH-like RNA-binding domain [PF16005.7, score=20.0]} {Human: ENSG00000139910, NOVA1, NOVA alternative splicing regulator 1, [RH, Score=236, Expect=2e-71]} {Mouse: ENSMUSG00000021047, Nova1, neuro-oncological ventral antigen 1, [RH, Score=223, Expect=3e-66]} {Dmel: FBgn0261552, ps, pasilla, [RH, Score=284, Expect=8e-89]} {Celegans: WBGene00013347, nova-1, NOVA kh (KH) homology domain homolog, [RH, Score=133, Expect=4e-34]} {Smed: dd_Smed_v6_5632_0_1, dd_Smed_v6_5632_0_1, [Score=315, Expect=4e-100]} {RNA1509_4143} {RNA1310_11244} {RNA815_9593.1}
6. MligTC455_14897 402 8.37 Mlig455_053068

Neo: -

Age: -

 SYT16 0.952 - - - - 0.952 - Mlig455_053068 {REF} {Length: 2101} {TRANSSPLICED} {Pfam: C2 domain [PF00168.32, score=30.1]} {Human: ENSG00000139973, SYT16, synaptotagmin 16, [Score=154, Expect=1e-39]} {Mouse: ENSMUSG00000016200, Syt14, synaptotagmin XIV, [Score=138, Expect=6e-34]} {Dmel: FBgn0261086, Syt14, Synaptotagmin 14, [Score=127, Expect=1e-30]} {Celegans: WBGene00004924, snt-4, SyNapTotagmin, [Score=58.2, Expect=7e-09]} {Smed: dd_Smed_v6_9164_0_3, dd_Smed_v6_9164_0_3, [Score=115, Expect=1e-27]} {RNA1509_28160} {RNA1310_13696} {RNA815_4420.1}
7. MligTC455_17465 3639 75.81 Mlig455_031877

Neo: -

Age: logFC(26M/2M)=0.427

 MEX3D 0.951 - - - - 0.951 - Mlig455_031877 {REF} {Length: 2898} {Pfam: KH domain [PF00013.31, score=72.7]; KH domain [PF07650.19, score=22.9]; KH domain [PF13083.8, score=19.8]; NusA-like KH domain [PF13184.8, score=19.6]} {Human: ENSG00000181588, MEX3D, mex-3 RNA binding family member D, [RH, Score=115, Expect=1e-26]; ENSG00000183496, MEX3B, mex-3 RNA binding family member B, [RH, Score=114, Expect=2e-26]} {Mouse: ENSMUSG00000048696, Mex3d, mex3 RNA binding family member D, [RH, Score=116, Expect=6e-27]; ENSMUSG00000057706, Mex3b, mex3 RNA binding family member B, [RH, Score=114, Expect=1e-26]} {Dmel: FBgn0039920, CG11360, [Score=103, Expect=4e-23]} {Celegans: WBGene00003229, mex-3, Muscle EXcess, [Score=100, Expect=1e-22]} {Smed: dd_Smed_v6_1999_0_1, dd_Smed_v6_1999_0_1, [Score=65.5, Expect=4e-11]} {RNA1509_3569} {RNA1310_5120.1} {RNA815_1516.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA