M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_34888

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_34888 610 12.71 Mlig455_059747

Neo: -

Age: Up-Down-Up

 PROM1 Mlig455_059747 {REF} {Length: 5570} {TRANSSPLICED} {Pfam: Prominin [PF05478.13, score=235.9]; Predicted membrane protein (DUF2207) [PF09972.11, score=18.4]} {Human: ENSG00000007062, PROM1, prominin 1, [Score=103, Expect=8e-22]} {Mouse: ENSMUSG00000029086, Prom1, prominin 1, [RH, Score=144, Expect=9e-35]} {Smed: dd_Smed_v6_1386_0_1, dd_Smed_v6_1386_0_1, [RH, Score=158, Expect=5e-40]} {RNA1509_24546} {RNA1310_3366.1, RNA1509_24546} {RNA1509_24546, RNA815_11986.1}

Cumulative graph for MligTC455_34888

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.843 3.981 0.56511 1.00000
RegionR2 -0.418 3.981 0.36624 0.76057
RegionR3 -1.118 3.981 0.02100 0.24370
RegionR4 0.601 3.981 0.18003 0.45004
RegionR5 -0.136 3.981 0.72806 1.00000
RegionR6 0.018 3.981 0.95949 1.00000
RegionR7 0.299 3.981 0.55400 1.00000
RegionR8 1.597 3.981 0.00402 0.11116

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.201 3.981 0.91060 1.00000
RegenerationR2 -0.009 3.981 0.97722 1.00000
RegenerationR3 0.399 3.981 0.34879 0.76992
RegenerationR4 -0.805 3.981 0.04100 0.32618
RegenerationR5 -0.295 3.981 0.41676 0.80992
RegenerationR6 -0.317 3.981 0.41375 0.74664
RegenerationBL -1.397 3.981 0.00485 0.06450
RegenerationTP -0.632 3.981 0.17869 0.61389


Genes with expression patterns similar to MligTC455_34888

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_34888 610 12.71 Mlig455_059747

Neo: -

Age: Up-Down-Up

 PROM1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_059747 {REF} {Length: 5570} {TRANSSPLICED} {Pfam: Prominin [PF05478.13, score=235.9]; Predicted membrane protein (DUF2207) [PF09972.11, score=18.4]} {Human: ENSG00000007062, PROM1, prominin 1, [Score=103, Expect=8e-22]} {Mouse: ENSMUSG00000029086, Prom1, prominin 1, [RH, Score=144, Expect=9e-35]} {Smed: dd_Smed_v6_1386_0_1, dd_Smed_v6_1386_0_1, [RH, Score=158, Expect=5e-40]} {RNA1509_24546} {RNA1310_3366.1, RNA1509_24546} {RNA1509_24546, RNA815_11986.1}
2. MligTC455_07182 156 3.26 Mlig455_060033

Neo: -

Age: Down-Up-Up

 OXTR 2.445 0.728 0.952 - - - 0.765 Mlig455_060033 {REF} {Length: 1704} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=44.6]} {Human: ENSG00000180914, OXTR, oxytocin receptor, [Score=48.9, Expect=1e-05]} {Mouse: ENSMUSG00000049112, Oxtr, oxytocin receptor, [Score=50.1, Expect=3e-06]} {Smed: dd_Smed_v6_27989_0_1, dd_Smed_v6_27989_0_1, [RH, Score=164, Expect=8e-47]} {RNA1310_22580} {RNA815_25223}
3. MligTC455_17371 402 8.37 Mlig455_057595

Neo: -

Age: Up-Down-Up

 FRMPD2 1.843 - 0.951 - 0.892 - - Mlig455_057595 {REF} {Length: 6274} {Pfam: PDZ domain [PF00595.26, score=116.9]; PDZ domain [PF17820.3, score=53.9]; FERM central domain [PF00373.20, score=34.0]; PDZ domain [PF13180.8, score=29.8]; FERM C-terminal PH-like domain [PF09380.12, score=20.6]} {Human: ENSG00000170324, FRMPD2, FERM and PDZ domain containing 2, [Score=94.0, Expect=2e-18]; ENSG00000163629, PTPN13, protein tyrosine phosphatase, non-receptor type 13, [Score=93.6, Expect=4e-18]} {Mouse: ENSMUSG00000034573, Ptpn13, protein tyrosine phosphatase, non-receptor type 13, [Score=94.4, Expect=1e-18]} {Dmel: FBgn0004583, ex, expanded, [Score=65.9, Expect=4e-10]} {Celegans: WBGene00001492, frm-5.1, FERM domain (Protein4.1-ezrin-radixin-moesin) family, [Score=77.4, Expect=1e-13]} {Smed: dd_Smed_v6_3493_1_1, dd_Smed_v6_3493_1_1, [Score=75.9, Expect=7e-14]} {RNA1509_18922, RNA1509_42494} {RNA1310_439, RNA1509_42494} {RNA1509_42494, RNA815_23639}
4. MligTC455_39314 435 9.07 Mlig455_002301

Neo: -

Age: -

 SMOC1 1.794 - 0.961 - - - 0.833 Mlig455_002301 {REF} {Length: 3122} {Pfam: Thyroglobulin type-1 repeat [PF00086.20, score=84.7]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=50.3]; Kazal-type serine protease inhibitor domain [PF07648.17, score=38.6]; Kazal-type serine protease inhibitor domain [PF00050.23, score=36.4]; EF-hand domain [PF13405.8, score=34.2]; EF-hand domain pair [PF13499.8, score=32.5]; EF hand [PF00036.34, score=29.6]; EF hand [PF13202.8, score=24.6]} {Human: ENSG00000198732, SMOC1, SPARC related modular calcium binding 1, [Score=79.7, Expect=4e-15]} {Mouse: ENSMUSG00000021136, Smoc1, SPARC related modular calcium binding 1, [Score=81.6, Expect=9e-16]} {Dmel: FBgn0262169, magu, [RH, Score=145, Expect=3e-36]} {RNA1509_16659, RNA1509_27208} {RNA1310_6756, RNA1509_27208} {RNA1509_27208, RNA815_13591}
5. MligTC455_36008 404 8.41 Mlig455_055395

Neo: -

Age: logFC(26M/2M)=0.738

 1.738 - 0.960 - - - 0.778 Mlig455_055395 {REF} {Length: 2036} {RNA1509_14528} {RNA1310_31437} {RNA815_14226}
6. MligTC455_08275 266 5.54 Mlig455_043965, Mlig455_044035

Neo: -

Age: Up-Down-Up

 ATP2B3 1.724 - 0.951 - - 0.773 -

Mlig455_043965 {REF} {Length: 354} {TRANSSPLICED} {Human: ENSG00000067842, ATP2B3, ATPase plasma membrane Ca2+ transporting 3, [Score=63.2, Expect=5e-13]; ENSG00000157087, ATP2B2, ATPase plasma membrane Ca2+ transporting 2, [Score=60.5, Expect=4e-12]} {Mouse: ENSMUSG00000031376, Atp2b3, ATPase, Ca++ transporting, plasma membrane 3, [Score=62.8, Expect=4e-13]; ENSMUSG00000030302, Atp2b2, ATPase, Ca++ transporting, plasma membrane 2, [Score=60.5, Expect=3e-12]} {Celegans: WBGene00003153, mca-3, Calcium-transporting ATPase, [Score=60.5, Expect=1e-12]} {Smed: dd_Smed_v6_1721_0_1, dd_Smed_v6_1721_0_1, [Score=53.5, Expect=3e-10]} {RNA1509_29344} {RNA1310_1116.2} {RNA815_787}

Mlig455_044035 {REF} {Length: 4707} {TRANSSPLICED} {Pfam: Cation transporting ATPase, C-terminus [PF00689.23, score=121.6]; E1-E2 ATPase [PF00122.22, score=110.5]; Cation transport ATPase (P-type) [PF13246.8, score=62.4]; Cation transporter/ATPase, N-terminus [PF00690.28, score=57.2]; haloacid dehalogenase-like hydrolase [PF00702.28, score=56.8]; haloacid dehalogenase-like hydrolase [PF08282.14, score=27.8]} {Human: ENSG00000067842, ATP2B3, ATPase plasma membrane Ca2+ transporting 3, [Score=1219, Expect=0.0]; ENSG00000157087, ATP2B2, ATPase plasma membrane Ca2+ transporting 2, [Score=1190, Expect=0.0]; ENSG00000058668, ATP2B4, ATPase plasma membrane Ca2+ transporting 4, [Score=1183, Expect=0.0]} {Mouse: ENSMUSG00000031376, Atp2b3, ATPase, Ca++ transporting, plasma membrane 3, [Score=1209, Expect=0.0]; ENSMUSG00000030302, Atp2b2, ATPase, Ca++ transporting, plasma membrane 2, [Score=1187, Expect=0.0]; ENSMUSG00000019943, Atp2b1, ATPase, Ca++ transporting, plasma membrane 1, [Score=1170, Expect=0.0]} {Dmel: FBgn0259214, PMCA, plasma membrane calcium ATPase, [Score=1228, Expect=0.0]} {Celegans: WBGene00003153, mca-3, Calcium-transporting ATPase, [Score=1162, Expect=0.0]} {Smed: dd_Smed_v6_4145_0_1, dd_Smed_v6_4145_0_1, [Score=1244, Expect=0.0]} {RNA1509_19936, RNA1509_2077} {RNA1310_1116.2, RNA1509_19936} {RNA1509_19936, RNA815_787}
7. MligTC455_28204 1060 22.08 Mlig455_000806, Mlig455_016770, Mlig455_021269, Mlig455_026403, Mlig455_027111, Mlig455_051724, Mlig455_059141, Mlig455_066023, Mlig455_066954

Neo: -

Age: Up-Down-Up

 PRR9 1.712 - 0.964 - 0.748 - -

Mlig455_000806 {REF} {Length: 1324} {NoTransDecoderORF} {RNA1509_44500} {RNA1310_4439.1} {RNA815_1450.1}

Mlig455_016770 {REF} {Length: 3416} {RNA1509_30620} {RNA1310_13656} {RNA815_1450.1}

Mlig455_021269 {REF} {Length: 13616} {Human: ENSG00000203783, PRR9, proline rich 9, [Score=47.4, Expect=2e-06]} {Celegans: WBGene00018026, F35A5.4, [Score=84.7, Expect=4e-18]} {RNA1509_30620} {RNA1310_4439.1} {RNA815_1450.1}

Mlig455_026403 {REF} {Length: 1937} {Human: ENSG00000203783, PRR9, proline rich 9, [Score=46.2, Expect=7e-07]} {RNA1509_30620, RNA1509_51595} {RNA1310_13656, RNA1509_51595} {RNA1509_51595, RNA815_1450.1}

Mlig455_027111 {REF} {Length: 3364} {Human: ENSG00000203783, PRR9, proline rich 9, [Score=47.0, Expect=2e-06]} {Celegans: WBGene00018026, F35A5.4, [Score=50.4, Expect=3e-07]} {RNA1509_30620} {RNA1310_13656} {RNA815_1450.1}

Mlig455_051724 {REF} {Length: 8347} {RNA1509_30620} {RNA1310_13656} {RNA815_1450.1}

Mlig455_059141 {REF} {Length: 7369} {Human: ENSG00000203783, PRR9, proline rich 9, [Score=48.1, Expect=2e-07]} {RNA1509_30620} {RNA1310_4439.1} {RNA815_1450.1}

Mlig455_066023 {REF} {Length: 2127} {RNA1509_30620} {RNA1310_13656} {RNA815_1450.1}

Mlig455_066954 {REF} {Length: 8210} {Human: ENSG00000203783, PRR9, proline rich 9, [Score=47.4, Expect=1e-06]} {RNA1509_30620} {RNA1310_4439.1} {RNA815_1450.1}
8. MligTC455_21228 91 1.89 Mlig455_010973

Neo: -

Age: -

 NOS1AP 1.701 - 0.950 - 0.751 - - Mlig455_010973 {REF} {Length: 3372} {Pfam: Phosphotyrosine interaction domain (PTB/PID) [PF00640.25, score=84.5]} {Human: ENSG00000198929, NOS1AP, nitric oxide synthase 1 adaptor protein, [RH, Score=210, Expect=2e-61]} {Mouse: ENSMUSG00000038473, Nos1ap, nitric oxide synthase 1 (neuronal) adaptor protein, [RH, Score=209, Expect=5e-61]} {Dmel: FBgn0261555, CG42673, [RH, Score=209, Expect=2e-59]} {Celegans: WBGene00001116, dyc-1, Dystrophin-like protein 1, [Score=205, Expect=2e-57]} {Smed: dd_Smed_v6_13377_0_1, dd_Smed_v6_13377_0_1, [Score=218, Expect=5e-64]} {RNA1509_56125} {RNA1310_16551, RNA1509_56125} {RNA1509_56125, RNA815_36051}
9. MligTC455_22715 64 1.34 Mlig455_046933

Neo: -

Age: logFC(26M/2M)=-0.390

 1.679 - 0.966 0.713 - - - Mlig455_046933 {REF} {Length: 3059} {RNA1509_25878, RNA1509_31234} {RNA1310_6954, RNA1509_25878, RNA1509_31234} {RNA1509_25878, RNA1509_31234, RNA815_8376.1}
10. MligTC455_36248 293 6.1 Mlig455_047225

Neo: -

Age: -

 CEP170 1.674 - 0.950 - - 0.724 - Mlig455_047225 {REF} {Length: 7154} {TRANSSPLICED} {Pfam: FHA domain [PF00498.28, score=63.8]; Inner membrane component of T3SS, cytoplasmic domain [PF16697.7, score=33.4]} {Human: ENSG00000276725, CEP170, centrosomal protein 170, [Score=96.7, Expect=3e-19]; ENSG00000143702, CEP170, centrosomal protein 170, [Score=96.7, Expect=3e-19]} {Mouse: ENSMUSG00000057335, Cep170, centrosomal protein 170, [Score=100, Expect=1e-20]} {Smed: dd_Smed_v6_9728_0_2, dd_Smed_v6_9728_0_2, [RH, Score=92.0, Expect=1e-18]} {RNA1509_35531, RNA1509_47933} {RNA1310_31312, RNA1509_47933} {RNA1509_47933, RNA815_29466}
11. MligTC455_47415 204 4.25 Mlig455_065682

Neo: Int S/G2/M

Age: -

 1.662 - 0.952 - 0.710 - - Mlig455_065682 {REF} {Length: 697} {NoTransDecoderORF} {RNA1509_49419} {RNA1310_93693} {RNA815_1595}
12. MligTC455_14085 29 0.61 Mlig455_002893

Neo: -

Age: Up-Down-Down

Region-enriched R2: 6.406/0.01193

 PPP2R5D 1.661 - 0.960 - - 0.701 - Mlig455_002893 {REF} {Length: 4141} {Pfam: Protein phosphatase 2A regulatory B subunit (B56 family) [PF01603.22, score=580.3]} {Human: ENSG00000112640, PPP2R5D, protein phosphatase 2 regulatory subunit B'delta, [RH, Score=675, Expect=0.0]; ENSG00000078304, PPP2R5C, protein phosphatase 2 regulatory subunit B'gamma, [RH, Score=647, Expect=0.0]} {Mouse: ENSMUSG00000059409, Ppp2r5d, protein phosphatase 2, regulatory subunit B', delta, [RH, Score=677, Expect=0.0]; ENSMUSG00000017843, Ppp2r5c, protein phosphatase 2, regulatory subunit B', gamma, [RH, Score=645, Expect=0.0]} {Dmel: FBgn0042693, wrd, well-rounded, [RH, Score=654, Expect=0.0]} {Celegans: WBGene00007554, pptr-2, Protein Phosphatase 2A (Two A) Regulatory subunit, [RH, Score=638, Expect=0.0]} {Smed: dd_Smed_v6_3379_0_1, dd_Smed_v6_3379_0_1, [RH, Score=665, Expect=0.0]} {RNA1509_7339} {RNA1310_39381} {RNA815_26062}
13. MligTC455_53787 269 5.6 Mlig455_023349

Neo: -

Age: Up-Down-Down

 MPDZ 0.972 - 0.972 - - - - Mlig455_023349 {REF} {Length: 8123} {Pfam: PDZ domain [PF00595.26, score=507.0]; PDZ domain [PF17820.3, score=249.1]; PDZ domain [PF13180.8, score=188.6]; Family of unknown function (DUF6288) [PF19805.1, score=25.5]} {Human: ENSG00000107186, MPDZ, multiple PDZ domain crumbs cell polarity complex component, [Score=421, Expect=2e-118]} {Mouse: ENSMUSG00000028402, Mpdz, multiple PDZ domain protein, [Score=419, Expect=5e-118]} {Dmel: FBgn0067864, Patj, [RH, Score=234, Expect=3e-63]} {Celegans: WBGene00003404, mpz-1, Multiple PDZ domain protein, [RH, Score=174, Expect=3e-43]} {Smed: dd_Smed_v6_5376_0_3, dd_Smed_v6_5376_0_3, [Score=368, Expect=2e-103]} {RNA1509_9181} {RNA1310_504} {RNA815_2967}
14. MligTC455_34752 11 0.22 Mlig455_026202

Neo: -

Age: Down-Up-Down

 RASGRF2 0.963 - 0.963 - - - - Mlig455_026202 {REF} {Length: 6487} {Pfam: RasGEF domain [PF00617.21, score=174.7]; RhoGEF domain [PF00621.22, score=118.6]; PH domain [PF00169.31, score=69.8]; RasGEF N-terminal motif [PF00618.22, score=64.6]; Pleckstrin homology domain [PF15413.8, score=20.9]; Pleckstrin homology domain [PF16652.7, score=19.8]; Transcription factor IIA, alpha/beta subunit [PF03153.15, score=19.6]} {Human: ENSG00000113319, RASGRF2, Ras protein specific guanine nucleotide releasing factor 2, [Score=708, Expect=0.0]} {Mouse: ENSMUSG00000032356, Rasgrf1, RAS protein-specific guanine nucleotide-releasing factor 1, [Score=699, Expect=0.0]} {Dmel: FBgn0001965, Sos, Son of sevenless, [Score=131, Expect=3e-30]} {Celegans: WBGene00004947, sos-1, Son of sevenless homolog, [Score=104, Expect=5e-22]} {Smed: dd_Smed_v6_18313_0_2, dd_Smed_v6_18313_0_2, [RH, Score=1138, Expect=0.0]} {RNA1509_15697} {RNA1310_18289} {RNA815_21605.1}
15. MligTC455_20919 1807 37.65 Mlig455_058504, Mlig455_058510

Neo: -

Age: -

 HIF1AN 0.96 - - - 0.960 - -

Mlig455_058504 {REF} {Length: 2110} {Pfam: Cupin-like domain [PF13621.8, score=54.4]; JmjC domain, hydroxylase [PF02373.24, score=20.9]} {Human: ENSG00000166135, HIF1AN, hypoxia inducible factor 1 subunit alpha inhibitor, [Score=48.5, Expect=1e-05]} {Mouse: ENSMUSG00000036450, Hif1an, hypoxia-inducible factor 1, alpha subunit inhibitor, [Score=48.1, Expect=9e-06]} {Dmel: FBgn0035166, CG13902, [Score=53.9, Expect=1e-07]} {Celegans: WBGene00007387, jmjd-5, JuMonJi (Transcription factor) Domain protein, [Score=53.1, Expect=2e-07]} {Smed: dd_Smed_v6_11273_0_1, dd_Smed_v6_11273_0_1, [Score=102, Expect=4e-24]} {RNA1509_13876, RNA1509_28932, RNA1509_55256} {RNA1310_3867.2, RNA1509_28932, RNA1509_55256} {RNA1509_28932, RNA1509_55256, RNA815_23697}

Mlig455_058510 {REF} {Length: 1685} {TRANSSPLICED} {Pfam: Cupin-like domain [PF13621.8, score=54.4]; JmjC domain, hydroxylase [PF02373.24, score=20.9]} {Mouse: ENSMUSG00000036450, Hif1an, hypoxia-inducible factor 1, alpha subunit inhibitor, [Score=47.8, Expect=1e-05]} {Dmel: FBgn0035166, CG13902, [Score=52.8, Expect=2e-07]} {Celegans: WBGene00007387, jmjd-5, JuMonJi (Transcription factor) Domain protein, [Score=52.0, Expect=5e-07]} {Smed: dd_Smed_v6_11273_0_1, dd_Smed_v6_11273_0_1, [Score=103, Expect=3e-24]} {RNA1509_13876} {RNA1310_3867.2} {RNA815_29066.1}
16. MligTC455_51605 99 2.07 Mlig455_024286

Neo: Int S/G2/M

Age: -

 NDRG1 0.96 - 0.960 - - - - Mlig455_024286 {REF} {Length: 3182} {TRANSSPLICED} {Pfam: Ndr family [PF03096.16, score=138.0]} {Human: ENSG00000104419, NDRG1, N-myc downstream regulated 1, [Score=107, Expect=1e-26]; ENSG00000165795, NDRG2, NDRG family member 2, [Score=105, Expect=2e-25]} {Mouse: ENSMUSG00000004558, Ndrg2, N-myc downstream regulated gene 2, [Score=104, Expect=2e-25]; ENSMUSG00000005125, Ndrg1, N-myc downstream regulated gene 1, [Score=104, Expect=2e-25]} {Dmel: FBgn0043070, MESK2, Misexpression suppressor of KSR 2, [Score=113, Expect=9e-29]} {Celegans: WBGene00013020, Y48G10A.3, [Score=95.1, Expect=2e-22]} {Smed: dd_Smed_v6_1911_0_1, dd_Smed_v6_1911_0_1, [Score=164, Expect=4e-48]} {RNA1509_46479} {RNA1310_27570} {RNA815_11809.1}
17. MligTC455_22629 203 4.23 Mlig455_012599

Neo: -

Age: -

 CAPZB 0.959 - - - 0.959 - - Mlig455_012599 {REF} {Length: 1813} {TRANSSPLICED} {Pfam: F-actin capping protein, beta subunit [PF01115.19, score=273.0]} {Human: ENSG00000077549, CAPZB, capping actin protein of muscle Z-line subunit beta, [Score=278, Expect=4e-93]} {Mouse: ENSMUSG00000028745, Capzb, capping protein (actin filament) muscle Z-line, beta, [Score=278, Expect=2e-93]} {Dmel: FBgn0011570, cpb, capping protein beta, [Score=273, Expect=1e-91]} {Celegans: WBGene00000293, cap-2, F-actin-capping protein subunit beta, [Score=253, Expect=8e-84]} {Smed: dd_Smed_v6_1165_0_1, dd_Smed_v6_1165_0_1, [Score=281, Expect=4e-95]} {RNA1509_26511} {RNA1310_18322.2} {RNA815_12071}
18. MligTC455_23015 246 5.13 Mlig455_044423

Neo: -

Age: -

 ACTR10 0.959 - 0.959 - - - - Mlig455_044423 {REF} {Length: 2401} {Pfam: Actin [PF00022.21, score=165.6]} {Human: ENSG00000131966, ACTR10, actin related protein 10 homolog, [RH, Score=330, Expect=1e-109]} {Mouse: ENSMUSG00000021076, Actr10, ARP10 actin-related protein 10, [RH, Score=333, Expect=4e-111]} {Dmel: FBgn0031050, Arp10, Actin-related protein 10, [RH, Score=270, Expect=3e-87]} {Celegans: WBGene00016793, arp-11, Actin-Related Proteins, [RH, Score=139, Expect=3e-37]} {Smed: dd_Smed_v6_2141_0_3, dd_Smed_v6_2141_0_3, [RH, Score=276, Expect=3e-89]} {RNA1509_14893} {RNA1310_14286} {RNA815_22726}
19. MligTC455_11361 145 3.02 Mlig455_034224

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.480

 LRP8 0.958 - 0.958 - - - - Mlig455_034224 {REF} {Length: 4100} {Pfam: Low-density lipoprotein receptor domain class A [PF00057.20, score=47.2]} {Human: ENSG00000157193, LRP8, LDL receptor related protein 8, [Score=75.9, Expect=1e-13]; ENSG00000130164, LDLR, low density lipoprotein receptor, [Score=74.3, Expect=3e-13]; ENSG00000168702, LRP1B, LDL receptor related protein 1B, [Score=73.9, Expect=9e-13]; ENSG00000137642, SORL1, sortilin related receptor 1, [Score=72.8, Expect=1e-12]} {Mouse: ENSMUSG00000028613, Lrp8, low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, [Score=75.5, Expect=1e-13]; ENSMUSG00000049252, Lrp1b, low density lipoprotein-related protein 1B (deleted in tumors), [Score=75.1, Expect=2e-13]; ENSMUSG00000049313, Sorl1, sortilin-related receptor, LDLR class A repeats-containing, [Score=72.0, Expect=2e-12]} {Dmel: FBgn0004649, yl, yolkless, [Score=68.9, Expect=1e-11]} {Celegans: WBGene00015083, egg-1, EGG sterile (Unfertilizable), [Score=74.3, Expect=1e-13]} {Smed: dd_Smed_v6_9829_0_1, dd_Smed_v6_9829_0_1, [Score=71.6, Expect=8e-13]} {RNA1509_15509} {RNA1310_7577, RNA1509_15509} {RNA1509_15509, RNA815_6380}
20. MligTC455_50375 2086 43.45 Mlig455_016459, Mlig455_016525, Mlig455_049814

Neo: -

Age: -

 0.958 - - - 0.958 - -

Mlig455_016459 {REF} {Length: 2149} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=23.2]; Ankyrin repeats (many copies) [PF13637.8, score=20.7]} {Smed: dd_Smed_v6_17861_0_1, dd_Smed_v6_17861_0_1, [RH, Score=120, Expect=2e-30]} {RNA1509_10140} {RNA1310_11634.1} {RNA815_4167}

Mlig455_016525 {REF} {Length: 2207} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=23.2]; Ankyrin repeats (many copies) [PF13637.8, score=20.7]} {Smed: dd_Smed_v6_17861_0_1, dd_Smed_v6_17861_0_1, [RH, Score=120, Expect=2e-30]} {RNA1509_10140, RNA1509_60156} {RNA1310_11634.1, RNA1509_10140, RNA1509_60156} {RNA1509_10140, RNA1509_60156, RNA815_4167}

Mlig455_049814 {REF} {Length: 2210} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=23.2]; Ankyrin repeats (many copies) [PF13637.8, score=20.7]} {Smed: dd_Smed_v6_17861_0_1, dd_Smed_v6_17861_0_1, [RH, Score=120, Expect=2e-30]} {RNA1509_10140} {RNA1310_11634.1} {RNA815_4167}
21. MligTC455_19002 593 12.36 Mlig455_042636

Neo: -

Age: -

 RAB4A 0.957 - - - 0.957 - - Mlig455_042636 {REF} {Length: 3442} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=192.0]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=107.5]; ADP-ribosylation factor family [PF00025.23, score=46.0]; 50S ribosome-binding GTPase [PF01926.25, score=22.9]; Elongation factor Tu GTP binding domain [PF00009.29, score=21.6]; Gtr1/RagA G protein conserved region [PF04670.14, score=19.0]} {Human: ENSG00000168118, RAB4A, RAB4A, member RAS oncogene family, [RH, Score=315, Expect=1e-109]; ENSG00000167578, RAB4B, RAB4B, member RAS oncogene family, [RH, Score=310, Expect=8e-108]; ENSG00000171570, RAB4B-EGLN2, RAB4B-EGLN2 readthrough (NMD candidate), [RH, Score=310, Expect=8e-108]} {Mouse: ENSMUSG00000019478, Rab4a, RAB4A, member RAS oncogene family, [RH, Score=314, Expect=1e-109]; ENSMUSG00000053291, Rab4b, RAB4B, member RAS oncogene family, [RH, Score=310, Expect=5e-108]} {Dmel: FBgn0016701, Rab4, [RH, Score=308, Expect=1e-107]} {Celegans: WBGene00004276, rab-14, RAB family, [Score=247, Expect=1e-83]} {Smed: dd_Smed_v6_8106_0_1, dd_Smed_v6_8106_0_1, [RH, Score=257, Expect=2e-87]} {RNA1509_11473} {RNA1310_40054, RNA1509_11473} {RNA1509_11473, RNA815_18978}
22. MligTC455_20386 36 0.75 Mlig455_026206

Neo: -

Age: Down-Up-Up

 0.955 - 0.955 - - - - Mlig455_026206 {REF} {Length: 3875} {Smed: dd_Smed_v6_14319_0_1, dd_Smed_v6_14319_0_1, [RH, Score=79.0, Expect=6e-17]} {RNA1509_51615} {RNA1310_6888} {RNA815_13531.1}
23. MligTC455_28482 740 15.42 Mlig455_026960, Mlig455_027108

Neo: -

Age: -

 TM9SF3 0.955 - 0.955 - - - -

Mlig455_026960 {REF} {Length: 2865} {TRANSSPLICED} {Pfam: Endomembrane protein 70 [PF02990.18, score=442.1]} {Human: ENSG00000077147, TM9SF3, transmembrane 9 superfamily member 3, [Score=685, Expect=0.0]} {Mouse: ENSMUSG00000025016, Tm9sf3, transmembrane 9 superfamily member 3, [Score=683, Expect=0.0]} {Dmel: FBgn0035622, TM9SF3, Transmembrane 9 superfamily protein member 3, [Score=659, Expect=0.0]} {Celegans: WBGene00021506, Y41D4A.4, Transmembrane 9 superfamily member, [Score=654, Expect=0.0]} {Smed: dd_Smed_v6_2737_0_1, dd_Smed_v6_2737_0_1, [Score=686, Expect=0.0]} {RNA1509_16799} {RNA1310_5383.1} {RNA815_11392}

Mlig455_027108 {REF} {Length: 2826} {TRANSSPLICED} {Pfam: Endomembrane protein 70 [PF02990.18, score=444.0]} {Human: ENSG00000077147, TM9SF3, transmembrane 9 superfamily member 3, [Score=685, Expect=0.0]} {Mouse: ENSMUSG00000025016, Tm9sf3, transmembrane 9 superfamily member 3, [Score=683, Expect=0.0]} {Dmel: FBgn0035622, TM9SF3, Transmembrane 9 superfamily protein member 3, [Score=659, Expect=0.0]} {Celegans: WBGene00021506, Y41D4A.4, Transmembrane 9 superfamily member, [Score=651, Expect=0.0]} {Smed: dd_Smed_v6_2737_0_1, dd_Smed_v6_2737_0_1, [Score=687, Expect=0.0]} {RNA1509_16799} {RNA1310_5383.1} {RNA815_11392}
24. MligTC455_41285 139 2.89 Mlig455_069278

Neo: -

Age: logFC(26M/2M)=-0.469

Region-enriched R8: 4.794/0.00005
Region-enriched R2: 3.899/0.00664

 TRPM7 0.955 - 0.955 - - - - Mlig455_069278 {REF} {Length: 4453} {tRNA: Val(CAC),pseudo, score=20.3} {Pfam: SLOG in TRPM [PF18139.3, score=112.9]; Ion transport protein [PF00520.33, score=47.3]; SLOG in TRPM, prokaryote [PF18171.3, score=33.2]} {Human: ENSG00000092439, TRPM7, transient receptor potential cation channel subfamily M member 7, [Score=280, Expect=3e-76]} {Mouse: ENSMUSG00000027365, Trpm7, transient receptor potential cation channel, subfamily M, member 7, [Score=281, Expect=9e-77]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=292, Expect=1e-81]} {Celegans: WBGene00001796, gtl-2, Gon-Two Like (TRP subfamily), [Score=165, Expect=7e-41]} {Smed: dd_Smed_v6_9288_0_1, dd_Smed_v6_9288_0_1, [Score=411, Expect=1e-123]} {RNA1509_14642} {RNA1310_2379, RNA1509_14642} {RNA1509_14642, RNA815_1069}
25. MligTC455_50546 21 0.44 Mlig455_045408

Neo: -

Age: -

 0.955 - 0.955 - - - - Mlig455_045408 {REF} {Length: 1345} {RNA1310_102440}
26. MligTC455_15708 262 5.45 Mlig455_028723

Neo: -

Age: Up-Down-Up

 0.954 - 0.954 - - - - Mlig455_028723 {REF} {Length: 922} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_31621} {RNA1310_68099} {RNA815_31039}
27. MligTC455_45328 307 6.41 Mlig455_069747

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.371

Region-enriched R2: 3.524/0.00087

 CBY1 0.954 - 0.954 - - - - Mlig455_069747 {REF} {Length: 1865} {Pfam: Chibby family [PF14645.8, score=103.6]} {Human: ENSG00000100211, CBY1, chibby family member 1, beta catenin antagonist, [RH, Score=85.5, Expect=1e-21]} {Mouse: ENSMUSG00000022428, Cby1, chibby family member 1, beta catenin antagonist, [RH, Score=95.9, Expect=3e-26]} {Smed: dd_Smed_v6_11618_0_1, dd_Smed_v6_11618_0_1, [Score=54.7, Expect=1e-10]} {RNA1509_21398, RNA1509_56624} {RNA1310_30284, RNA1509_56624} {RNA1509_56624, RNA815_13488}
28. MligTC455_28208 284 5.92 Mlig455_021874

Neo: -

Age: -

 0.953 - - - 0.953 - - Mlig455_021874 {REF} {Length: 7459} {Smed: dd_Smed_v6_3783_0_1, dd_Smed_v6_3783_0_1, [RH, Score=428, Expect=5e-123]} {RNA1509_10937} {RNA1310_1042.1} {RNA815_1808}
29. MligTC455_42512 250 5.21 Mlig455_062471

Neo: -

Age: -

 0.953 - 0.953 - - - - Mlig455_062471 {REF} {Length: 1338} {TRANSSPLICED} {Pfam: Protein of unknown function (DUF3421) [PF11901.10, score=100.2]} {Dmel: FBgn0033787, CG13321, [Score=77.8, Expect=4e-17]} {Smed: dd_Smed_v6_30758_0_1, dd_Smed_v6_30758_0_1, [Score=106, Expect=3e-29]} {RNA1509_24143, RNA1509_27456} {RNA1310_20408, RNA1509_24143, RNA1509_27456} {RNA1509_24143, RNA1509_27456, RNA815_10936.1}
30. MligTC455_25550 101 2.11 Mlig455_022559

Neo: -

Age: Down-Up-Down

 0.952 - 0.952 - - - - Mlig455_022559 {REF} {Length: 3475} {TRANSSPLICED} {Pfam: Double zinc ribbon [PF12773.9, score=18.9]} {RNA1509_58898} {RNA1310_19071} {RNA815_18874}
31. MligTC455_31232 302 6.28 Mlig455_015445, Mlig455_032135

Neo: -

Age: -

 SLC30A2 0.952 - 0.952 - - - -

Mlig455_015445 {REF} {Length: 3204} {TRANSSPLICED} {Pfam: Cation efflux family [PF01545.23, score=156.3]} {Human: ENSG00000158014, SLC30A2, solute carrier family 30 member 2, [Score=354, Expect=1e-120]} {Mouse: ENSMUSG00000028836, Slc30a2, solute carrier family 30 (zinc transporter), member 2, [Score=351, Expect=8e-120]} {Dmel: FBgn0051860, ZnT33D, Zinc transporter 33D, [Score=308, Expect=7e-99]} {Celegans: WBGene00011821, cdf-2, Cation Diffusion Facilitator family, [Score=317, Expect=5e-107]} {Smed: dd_Smed_v6_5529_0_1, dd_Smed_v6_5529_0_1, [Score=379, Expect=6e-131]} {RNA1509_49207} {RNA1310_23206, RNA1509_49207} {RNA1509_49207, RNA815_45362}

Mlig455_032135 {REF} {Length: 1369} {TRANSSPLICED} {Pfam: Cation efflux family [PF01545.23, score=78.2]} {Human: ENSG00000158014, SLC30A2, solute carrier family 30 member 2, [Score=133, Expect=1e-37]} {Mouse: ENSMUSG00000028836, Slc30a2, solute carrier family 30 (zinc transporter), member 2, [Score=129, Expect=2e-36]} {Dmel: FBgn0028516, ZnT35C, Zinc transporter 35C, [Score=130, Expect=1e-36]} {Celegans: WBGene00011821, cdf-2, Cation Diffusion Facilitator family, [Score=122, Expect=4e-34]} {Smed: dd_Smed_v6_5007_0_2, dd_Smed_v6_5007_0_2, [Score=149, Expect=4e-44]} {RNA1509_49207} {RNA1310_23206} {RNA815_45362}
32. MligTC455_45966 875 18.22 Mlig455_000854

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.228

 SMARCE1 0.952 - 0.952 - - - - Mlig455_000854 {REF} {Length: 2300} {TRANSSPLICED} {Pfam: HMG (high mobility group) box [PF00505.21, score=53.8]; HMG-box domain [PF09011.12, score=22.9]} {Human: ENSG00000073584, SMARCE1, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, [Score=118, Expect=6e-30]} {Mouse: ENSMUSG00000037935, Smarce1, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, [Score=118, Expect=1e-29]} {Dmel: FBgn0030093, Bap111, Brahma associated protein 111kD, [Score=101, Expect=3e-23]} {Celegans: WBGene00022182, swsn-3, SWI/SNF nucleosome remodeling complex component, [Score=83.2, Expect=8e-18]} {Smed: dd_Smed_v6_5085_0_1, dd_Smed_v6_5085_0_1, [Score=144, Expect=6e-38]} {RNA1509_13171, RNA1509_53246} {RNA1310_8835.1, RNA1509_13171, RNA1509_53246} {RNA1509_13171, RNA1509_53246, RNA815_5568}
33. MligTC455_47075 126 2.63 Mlig455_033745

Neo: -

Age: Up-Up-Down

 PCDH1 0.952 - 0.952 - - - - Mlig455_033745 {REF} {Length: 4991} {Pfam: Cadherin domain [PF00028.19, score=181.7]; Cadherin-like [PF16184.7, score=27.8]; Cadherin-like [PF08266.14, score=24.6]} {Human: ENSG00000156453, PCDH1, protocadherin 1, [Score=203, Expect=2e-52]} {Mouse: ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=204, Expect=2e-53]} {Dmel: FBgn0284247, ds, dachsous, [Score=162, Expect=9e-40]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=149, Expect=4e-36]} {Smed: dd_Smed_v6_21207_0_1, dd_Smed_v6_21207_0_1, [Score=273, Expect=4e-76]} {RNA1509_26484} {RNA1310_13116, RNA1509_26484} {RNA1509_26484, RNA815_12525}
34. MligTC455_28207 237 4.93 Mlig455_021871

Neo: -

Age: -

 0.951 - - - 0.951 - - Mlig455_021871 {REF} {Length: 5277} {Smed: dd_Smed_v6_3783_0_4, dd_Smed_v6_3783_0_4, [Score=266, Expect=5e-74]} {RNA1509_10937} {RNA1310_1042.1} {RNA815_1808}
35. MligTC455_52239 629 13.1 Mlig455_029233

Neo: -

Age: logFC(26M/2M)=-0.429

 ABCG2 0.951 - 0.951 - - - - Mlig455_029233 {REF} {Length: 3918} {Pfam: ABC-2 type transporter [PF01061.26, score=125.2]; ABC transporter [PF00005.29, score=73.3]; ABC-2 type transporter [PF19055.2, score=43.6]; AAA domain, putative AbiEii toxin, Type IV TA system [PF13304.8, score=31.5]; RecF/RecN/SMC N terminal domain [PF02463.21, score=23.9]; AAA domain [PF13476.8, score=20.9]} {Human: ENSG00000118777, ABCG2, ATP binding cassette subfamily G member 2 (Junior blood group), [Score=541, Expect=0.0]} {Mouse: ENSMUSG00000029802, Abcg2, ATP binding cassette subfamily G member 2 (Junior blood group), [Score=546, Expect=0.0]} {Dmel: FBgn0003996, w, white, [Score=257, Expect=4e-74]} {Celegans: WBGene00012925, wht-8, WHiTe (Drosophila) related ABC transporter, [RH, Score=259, Expect=1e-75]} {Smed: dd_Smed_v6_4225_0_2, dd_Smed_v6_4225_0_2, [RH, Score=689, Expect=0.0]} {RNA1509_2851} {RNA1310_949.2} {RNA815_1895}
36. MligTC455_06952 307 6.39 Mlig455_050819

Neo: -

Age: -

Region-enriched R8: 3.289/0.00415
Region-enriched R2: 2.988/0.00350

 0.95 - 0.950 - - - - Mlig455_050819 {REF} {Length: 2070} {TRANSSPLICED} {RNA1509_10763, RNA1509_49118, RNA1509_59342} {RNA1310_24738.1, RNA1509_10763, RNA1509_49118, RNA1509_59342} {RNA1509_10763, RNA1509_49118, RNA1509_59342, RNA815_3785.1}
37. MligTC455_18978 61 1.26 Mlig455_009495

Neo: -

Age: -

Region-enriched R2: 4.421/0.03364

 0.95 - 0.950 - - - - Mlig455_009495 {REF} {Length: 2451} {TRANSSPLICED} {Pfam: Ubiquitin-like domain [PF18036.3, score=69.2]} {RNA1509_48735} {RNA1310_34239.1} {RNA815_12180}
38. MligTC455_20079 78 1.63 Mlig455_033388

Neo: -

Age: -

 KLHDC4 0.95 - 0.950 - - - - Mlig455_033388 {REF} {Length: 3341} {TRANSSPLICED} {Pfam: Galactose oxidase, central domain [PF13415.8, score=77.7]; Galactose oxidase, central domain [PF13418.8, score=73.9]; Kelch motif [PF13854.8, score=57.1]; Kelch motif [PF13964.8, score=54.0]; Kelch motif [PF01344.27, score=35.5]; Kelch motif [PF07646.17, score=34.4]} {Human: ENSG00000104731, KLHDC4, kelch domain containing 4, [RH, Score=217, Expect=4e-63]} {Mouse: ENSMUSG00000040263, Klhdc4, kelch domain containing 4, [RH, Score=218, Expect=5e-63]} {Dmel: FBgn0036301, CG4069, [RH, Score=239, Expect=6e-72]} {Celegans: WBGene00001827, hcf-1, HCF1 related; Host cell factor 1, [Score=67.4, Expect=1e-11]} {RNA1509_26313} {RNA1310_13537, RNA1509_26313} {RNA1509_26313, RNA815_16814.1}
39. MligTC455_46537 327 6.8 Mlig455_017715

Neo: -

Age: Down-Down-Up

Regeneration-upregulated R3: 3.497

Regeneration-enriched R3: 3.497

 HPGDS 0.95 - 0.950 - - - - Mlig455_017715 {REF} {Length: 2152} {Pfam: Glutathione S-transferase, C-terminal domain [PF14497.8, score=60.8]; Glutathione S-transferase, N-terminal domain [PF02798.22, score=39.5]; Glutathione S-transferase, C-terminal domain [PF00043.27, score=37.5]; Glutathione S-transferase, N-terminal domain [PF13417.8, score=21.8]} {Human: ENSG00000163106, HPGDS, hematopoietic prostaglandin D synthase, [Score=85.5, Expect=3e-20]} {Mouse: ENSMUSG00000029919, Hpgds, hematopoietic prostaglandin D synthase, [Score=87.8, Expect=3e-21]} {Dmel: FBgn0010226, GstS1, Glutathione S transferase S1, [Score=84.7, Expect=9e-20]} {Celegans: WBGene00001751, gst-3, Glutathione S-transferase 3, [RH, Score=104, Expect=8e-28]} {Smed: dd_Smed_v6_1206_0_1, dd_Smed_v6_1206_0_1, [Score=100, Expect=2e-26]} {RNA1509_37739} {RNA1310_35706, RNA1509_37739} {RNA1509_37739, RNA815_14140.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA