TomoSeq data search

Data search

Results for MligTC455_19002

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_19002

593

12.36

Mlig455_042636

Neo: -

Age: -

RAB4A

Mlig455_042636 {REF} {Length: 3442} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=192.0]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=107.5]; ADP-ribosylation factor family [PF00025.23, score=46.0]; 50S ribosome-binding GTPase [PF01926.25, score=22.9]; Elongation factor Tu GTP binding domain [PF00009.29, score=21.6]; Gtr1/RagA G protein conserved region [PF04670.14, score=19.0]} {Human: ENSG00000168118, RAB4A, RAB4A, member RAS oncogene family, [RH, Score=315, Expect=1e-109]; ENSG00000167578, RAB4B, RAB4B, member RAS oncogene family, [RH, Score=310, Expect=8e-108]; ENSG00000171570, RAB4B-EGLN2, RAB4B-EGLN2 readthrough (NMD candidate), [RH, Score=310, Expect=8e-108]} {Mouse: ENSMUSG00000019478, Rab4a, RAB4A, member RAS oncogene family, [RH, Score=314, Expect=1e-109]; ENSMUSG00000053291, Rab4b, RAB4B, member RAS oncogene family, [RH, Score=310, Expect=5e-108]} {Dmel: FBgn0016701, Rab4, [RH, Score=308, Expect=1e-107]} {Celegans: WBGene00004276, rab-14, RAB family, [Score=247, Expect=1e-83]} {Smed: dd_Smed_v6_8106_0_1, dd_Smed_v6_8106_0_1, [RH, Score=257, Expect=2e-87]} {RNA1509_11473} {RNA1310_40054, RNA1509_11473} {RNA1509_11473, RNA815_18978}

Cumulative graph for MligTC455_19002

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	0.651	3.955	0.51828	1.00000
RegionR2	0.899	3.955	0.05504	0.28107
RegionR3	0.546	3.955	0.15489	0.66598
RegionR4	-0.339	3.955	0.49108	0.81790
RegionR5	0.378	3.955	0.29214	0.62432
RegionR6	0.039	3.955	0.91761	1.00000
RegionR7	0.973	3.955	0.03434	0.35239
RegionR8	-3.147	3.955	0.00168	0.06652

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-7.205	3.955	0.06316	0.73816
RegenerationR2	0.197	3.955	0.56708	0.90134
RegenerationR3	0.202	3.955	0.62061	0.91695
RegenerationR4	0.457	3.955	0.30312	0.74458
RegenerationR5	0.415	3.955	0.26800	0.69935
RegenerationR6	0.355	3.955	0.42033	0.75143
RegenerationBL	0.192	3.955	0.78886	1.00000
RegenerationTP	0.764	3.955	0.34155	0.78479

Genes with expression patterns similar to MligTC455_19002

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_19002	593	12.36	Mlig455_042636	Neo: - Age: -	RAB4A	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_042636 {REF} {Length: 3442} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=192.0]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=107.5]; ADP-ribosylation factor family [PF00025.23, score=46.0]; 50S ribosome-binding GTPase [PF01926.25, score=22.9]; Elongation factor Tu GTP binding domain [PF00009.29, score=21.6]; Gtr1/RagA G protein conserved region [PF04670.14, score=19.0]} {Human: ENSG00000168118, RAB4A, RAB4A, member RAS oncogene family, [RH, Score=315, Expect=1e-109]; ENSG00000167578, RAB4B, RAB4B, member RAS oncogene family, [RH, Score=310, Expect=8e-108]; ENSG00000171570, RAB4B-EGLN2, RAB4B-EGLN2 readthrough (NMD candidate), [RH, Score=310, Expect=8e-108]} {Mouse: ENSMUSG00000019478, Rab4a, RAB4A, member RAS oncogene family, [RH, Score=314, Expect=1e-109]; ENSMUSG00000053291, Rab4b, RAB4B, member RAS oncogene family, [RH, Score=310, Expect=5e-108]} {Dmel: FBgn0016701, Rab4, [RH, Score=308, Expect=1e-107]} {Celegans: WBGene00004276, rab-14, RAB family, [Score=247, Expect=1e-83]} {Smed: dd_Smed_v6_8106_0_1, dd_Smed_v6_8106_0_1, [RH, Score=257, Expect=2e-87]} {RNA1509_11473} {RNA1310_40054, RNA1509_11473} {RNA1509_11473, RNA815_18978}
2.	MligTC455_45801	473	9.86	Mlig455_060953	Neo: - Age: Up-Down-Down Region-enriched R2: 2.971/0.00047	TENM1	2.561	-	-	0.954	0.886	-	0.721	Mlig455_060953 {REF} {Length: 10667} {Pfam: EGF-like domain [PF07974.15, score=60.5]} {Human: ENSG00000009694, TENM1, teneurin transmembrane protein 1, [RH, Score=739, Expect=0.0]} {Mouse: ENSMUSG00000016150, Tenm1, teneurin transmembrane protein 1, [RH, Score=750, Expect=0.0]} {Dmel: FBgn0004449, Ten-m, Tenascin major, [Score=710, Expect=0.0]} {Celegans: WBGene00006498, ten-1, Teneurin-1, [RH, Score=459, Expect=6e-130]} {Smed: dd_Smed_v6_5439_0_3, dd_Smed_v6_5439_0_3, [Score=593, Expect=5e-175]} {RNA1509_19240} {RNA1310_136, RNA1509_19240} {RNA1509_19240, RNA815_6451}
3.	MligTC455_52209	457	9.52	Mlig455_046753	Neo: - Age: -		1.791	-	-	0.960	0.831	-	-	Mlig455_046753 {REF} {Length: 1229} {NoTransDecoderORF} {RNA1509_38946} {RNA1310_35643} {RNA815_17779}
4.	MligTC455_52208	598	12.46	Mlig455_044461, Mlig455_044471	Neo: - Age: Down-Down-Up		1.776	-	-	0.963	0.813	-	-	Mlig455_044461 {REF} {Length: 1583} {RNA1509_39773} {RNA1310_35643, RNA1509_39773} {RNA1509_39773, RNA815_17779} Mlig455_044471 {REF} {Length: 1074} {RNA1509_39773} {RNA1310_35643} {RNA815_17779}
5.	MligTC455_28208	284	5.92	Mlig455_021874	Neo: - Age: -		0.966	-	-	-	0.966	-	-	Mlig455_021874 {REF} {Length: 7459} {Smed: dd_Smed_v6_3783_0_1, dd_Smed_v6_3783_0_1, [RH, Score=428, Expect=5e-123]} {RNA1509_10937} {RNA1310_1042.1} {RNA815_1808}
6.	MligTC455_18191	426	8.88	Mlig455_013109, Mlig455_013200	Neo: - Age: -		0.965	-	-	-	-	-	0.965	Mlig455_013109 {REF} {Length: 1736} {TRANSSPLICED} {Pfam: THAP domain [PF05485.14, score=49.6]; Transcription factor IIA, alpha/beta subunit [PF03153.15, score=28.1]; Anti-sigma-K factor rskA [PF10099.11, score=23.9]} {RNA1509_21728, RNA1509_53612} {RNA1310_31334.1, RNA1509_53612} {RNA1509_53612, RNA815_35876} Mlig455_013200 {REF} {Length: 2209} {TRANSSPLICED} {Pfam: THAP domain [PF05485.14, score=49.6]; Transcription factor IIA, alpha/beta subunit [PF03153.15, score=27.8]; Anti-sigma-K factor rskA [PF10099.11, score=23.8]} {RNA1509_21728, RNA1509_43501} {RNA1310_31334.1, RNA1509_21728} {RNA1509_21728, RNA815_35876}
7.	MligTC455_28207	237	4.93	Mlig455_021871	Neo: - Age: -		0.96	-	-	-	0.960	-	-	Mlig455_021871 {REF} {Length: 5277} {Smed: dd_Smed_v6_3783_0_4, dd_Smed_v6_3783_0_4, [Score=266, Expect=5e-74]} {RNA1509_10937} {RNA1310_1042.1} {RNA815_1808}
8.	MligTC455_53429	1127	23.49	Mlig455_030401	Neo: - Age: -		0.959	-	-	0.959	-	-	-	Mlig455_030401 {REF} {Length: 1102} {RNA1509_12168, RNA1509_4607} {RNA1310_30647, RNA1509_12168, RNA1509_4607} {RNA1509_12168, RNA1509_4607, RNA815_18460}
9.	MligTC455_49014	544	11.33	Mlig455_006294	Neo: - Age: -	UBL3	0.958	-	-	-	-	-	0.958	Mlig455_006294 {REF} {Length: 2229} {TRANSSPLICED} {Pfam: Ubiquitin-2 like Rad60 SUMO-like [PF13881.8, score=89.0]} {Human: ENSG00000122042, UBL3, ubiquitin like 3, [RH, Score=152, Expect=5e-48]} {Mouse: ENSMUSG00000001687, Ubl3, ubiquitin-like 3, [RH, Score=151, Expect=8e-48]} {Dmel: FBgn0026076, UBL3, Ubiquitin like 3, [Score=141, Expect=2e-41]} {Celegans: WBGene00008121, C46F11.6, Ubiquitin-like protein, [Score=115, Expect=7e-34]} {Smed: dd_Smed_v6_10574_0_1, dd_Smed_v6_10574_0_1, [Score=107, Expect=1e-30]} {RNA1509_29746, RNA1509_45031, RNA1509_49077} {RNA1310_53434, RNA1509_29746, RNA1509_45031, RNA1509_49077} {RNA1509_29746, RNA1509_45031, RNA1509_49077, RNA815_28925}
10.	MligTC455_34329	1695	35.32	Mlig455_025808	Neo: - Age: logFC(26M/2M)=-0.454	FAIM	0.957	-	-	0.957	-	-	-	Mlig455_025808 {REF} {Length: 1108} {TRANSSPLICED} {Pfam: Fas apoptotic inhibitory molecule (FAIM1) [PF06905.15, score=227.6]} {Human: ENSG00000158234, FAIM, Fas apoptotic inhibitory molecule, [Score=190, Expect=2e-61]} {Mouse: ENSMUSG00000032463, Faim, Fas apoptotic inhibitory molecule, [Score=187, Expect=1e-60]} {Dmel: FBgn0033985, CG10257, [Score=128, Expect=7e-37]} {Celegans: WBGene00016633, C44B11.1, [Score=165, Expect=8e-52]} {Smed: dd_Smed_v6_9854_0_1, dd_Smed_v6_9854_0_1, [RH, Score=179, Expect=1e-57]} {RNA1509_14334, RNA1509_59589} {RNA1310_30778, RNA1509_14334, RNA1509_59589} {RNA1509_14334, RNA1509_59589, RNA815_14130.1}
11.	MligTC455_34888	610	12.71	Mlig455_059747	Neo: - Age: Up-Down-Up	PROM1	0.957	-	-	-	0.957	-	-	Mlig455_059747 {REF} {Length: 5570} {TRANSSPLICED} {Pfam: Prominin [PF05478.13, score=235.9]; Predicted membrane protein (DUF2207) [PF09972.11, score=18.4]} {Human: ENSG00000007062, PROM1, prominin 1, [Score=103, Expect=8e-22]} {Mouse: ENSMUSG00000029086, Prom1, prominin 1, [RH, Score=144, Expect=9e-35]} {Smed: dd_Smed_v6_1386_0_1, dd_Smed_v6_1386_0_1, [RH, Score=158, Expect=5e-40]} {RNA1509_24546} {RNA1310_3366.1, RNA1509_24546} {RNA1509_24546, RNA815_11986.1}
12.	MligTC455_26587	171	3.56	Mlig455_001844	Neo: - Age: Up-Down-Down, logFC(26M/2M)=0.297	MYH10	0.955	-	-	-	-	0.955	-	Mlig455_001844 {REF} {Length: 9171} {Pfam: Myosin head (motor domain) [PF00063.23, score=1069.2]; Myosin tail [PF01576.21, score=835.3]; Myosin N-terminal SH3-like domain [PF02736.21, score=50.1]; QLQ [PF08880.13, score=23.9]} {Human: ENSG00000133026, MYH10, myosin heavy chain 10, [Score=1512, Expect=0.0]; ENSG00000100345, MYH9, myosin heavy chain 9, [Score=1497, Expect=0.0]; ENSG00000133392, MYH11, myosin heavy chain 11, [Score=1484, Expect=0.0]; ENSG00000276480, MYH11, myosin heavy chain 11, [Score=1484, Expect=0.0]} {Mouse: ENSMUSG00000020900, Myh10, myosin, heavy polypeptide 10, non-muscle, [Score=1514, Expect=0.0]; ENSMUSG00000022443, Myh9, myosin, heavy polypeptide 9, non-muscle, [Score=1505, Expect=0.0]; ENSMUSG00000018830, Myh11, myosin, heavy polypeptide 11, smooth muscle, [Score=1469, Expect=0.0]} {Dmel: FBgn0265434, zip, zipper, [Score=1660, Expect=0.0]} {Celegans: WBGene00003776, nmy-1, Non-muscle MYosin, [Score=1402, Expect=0.0]} {Smed: dd_Smed_v6_2912_0_1, dd_Smed_v6_2912_0_1, [Score=1388, Expect=0.0]} {RNA1509_6218} {RNA1310_666} {RNA815_1591}
13.	MligTC455_22282	66	1.37	Mlig455_058452	Neo: - Age: -		0.952	-	-	-	-	0.952	-	Mlig455_058452 {REF} {Length: 5087} {TRANSSPLICED} {Smed: dd_Smed_v6_4268_0_2, dd_Smed_v6_4268_0_2, [Score=72.8, Expect=2e-15]} {RNA1509_21983} {RNA1310_15855} {RNA815_31364}

Berezikov Lab - 2020-2021 © ERIBA