TomoSeq data search

Data search

Results for MligTC455_35415

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_35415

2569

53.52

Mlig455_040549, Mlig455_062089

Neo: -

Age: -

Region-enriched R2: 1.828/0.00030
Region-enriched R6: 1.548/0.00050

SPON1

Mlig455_040549 {REF} {Length: 3554} {Pfam: Spondin_N [PF06468.15, score=172.2]; Kunitz/Bovine pancreatic trypsin inhibitor domain [PF00014.25, score=92.5]; Spondin-like TSP1 domain [PF19028.2, score=86.2]; Thrombospondin type 1 domain [PF00090.21, score=43.5]; Reeler domain [PF02014.18, score=33.7]} {Human: ENSG00000262655, SPON1, spondin 1, [RH, Score=221, Expect=5e-60]} {Mouse: ENSMUSG00000038156, Spon1, spondin 1, (f-spondin) extracellular matrix protein, [RH, Score=224, Expect=3e-61]} {Dmel: FBgn0026721, fat-spondin, [RH, Score=219, Expect=7e-60]} {Celegans: WBGene00006893, spon-1, SPONdin (Extracellular matrix glycoprotein) family, [RH, Score=236, Expect=1e-65]} {Smed: dd_Smed_v6_2400_0_1, dd_Smed_v6_2400_0_1, [RH, Score=376, Expect=7e-117]} {RNA1509_12151, RNA1509_34516, RNA1509_4778} {RNA1310_4115.1, RNA1509_12151, RNA1509_34516, RNA1509_4778} {RNA1509_12151, RNA1509_34516, RNA1509_4778, RNA815_2374}

Mlig455_062089 {REF} {Length: 3332} {Pfam: Spondin_N [PF06468.15, score=172.9]; Kunitz/Bovine pancreatic trypsin inhibitor domain [PF00014.25, score=103.7]; Spondin-like TSP1 domain [PF19028.2, score=85.5]; Thrombospondin type 1 domain [PF00090.21, score=47.2]; Reeler domain [PF02014.18, score=34.0]} {Human: ENSG00000262655, SPON1, spondin 1, [RH, Score=221, Expect=1e-59]} {Mouse: ENSMUSG00000038156, Spon1, spondin 1, (f-spondin) extracellular matrix protein, [RH, Score=223, Expect=8e-61]} {Dmel: FBgn0026721, fat-spondin, [RH, Score=217, Expect=4e-59]} {Celegans: WBGene00006893, spon-1, SPONdin (Extracellular matrix glycoprotein) family, [RH, Score=236, Expect=3e-65]} {Smed: dd_Smed_v6_2400_0_1, dd_Smed_v6_2400_0_1, [RH, Score=375, Expect=8e-116]} {RNA1509_12151, RNA1509_45559} {RNA1310_4115.1, RNA1509_45559} {RNA1509_45559, RNA815_2374}

Cumulative graph for MligTC455_35415

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-3.527	5.869	0.00098	0.10289
RegionR2	1.828	5.869	0.00000	0.00030
RegionR3	0.82	5.869	0.01704	0.21402
RegionR4	-1.115	5.869	0.01620	0.08749
RegionR5	-0.076	5.869	0.83761	1.00000
RegionR6	1.548	5.869	0.00000	0.00050
RegionR7	0.122	5.869	0.77032	1.00000
RegionR8	0.4	5.869	0.41977	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	2.978	5.869	0.02493	0.59669
RegenerationR2	-0.776	5.869	0.03037	0.28710
RegenerationR3	0.345	5.869	0.35982	0.77652
RegenerationR4	0.631	5.869	0.11643	0.52125
RegenerationR5	0.096	5.869	0.79593	0.98745
RegenerationR6	-0.573	5.869	0.12537	0.43482
RegenerationBL	-1.186	5.869	0.00555	0.07044
RegenerationTP	-0.216	5.869	0.63227	0.97870

Genes with expression patterns similar to MligTC455_35415

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_35415	2569	53.52	Mlig455_040549, Mlig455_062089	Neo: - Age: - Region-enriched R2: 1.828/0.00030 Region-enriched R6: 1.548/0.00050	SPON1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_040549 {REF} {Length: 3554} {Pfam: Spondin_N [PF06468.15, score=172.2]; Kunitz/Bovine pancreatic trypsin inhibitor domain [PF00014.25, score=92.5]; Spondin-like TSP1 domain [PF19028.2, score=86.2]; Thrombospondin type 1 domain [PF00090.21, score=43.5]; Reeler domain [PF02014.18, score=33.7]} {Human: ENSG00000262655, SPON1, spondin 1, [RH, Score=221, Expect=5e-60]} {Mouse: ENSMUSG00000038156, Spon1, spondin 1, (f-spondin) extracellular matrix protein, [RH, Score=224, Expect=3e-61]} {Dmel: FBgn0026721, fat-spondin, [RH, Score=219, Expect=7e-60]} {Celegans: WBGene00006893, spon-1, SPONdin (Extracellular matrix glycoprotein) family, [RH, Score=236, Expect=1e-65]} {Smed: dd_Smed_v6_2400_0_1, dd_Smed_v6_2400_0_1, [RH, Score=376, Expect=7e-117]} {RNA1509_12151, RNA1509_34516, RNA1509_4778} {RNA1310_4115.1, RNA1509_12151, RNA1509_34516, RNA1509_4778} {RNA1509_12151, RNA1509_34516, RNA1509_4778, RNA815_2374} Mlig455_062089 {REF} {Length: 3332} {Pfam: Spondin_N [PF06468.15, score=172.9]; Kunitz/Bovine pancreatic trypsin inhibitor domain [PF00014.25, score=103.7]; Spondin-like TSP1 domain [PF19028.2, score=85.5]; Thrombospondin type 1 domain [PF00090.21, score=47.2]; Reeler domain [PF02014.18, score=34.0]} {Human: ENSG00000262655, SPON1, spondin 1, [RH, Score=221, Expect=1e-59]} {Mouse: ENSMUSG00000038156, Spon1, spondin 1, (f-spondin) extracellular matrix protein, [RH, Score=223, Expect=8e-61]} {Dmel: FBgn0026721, fat-spondin, [RH, Score=217, Expect=4e-59]} {Celegans: WBGene00006893, spon-1, SPONdin (Extracellular matrix glycoprotein) family, [RH, Score=236, Expect=3e-65]} {Smed: dd_Smed_v6_2400_0_1, dd_Smed_v6_2400_0_1, [RH, Score=375, Expect=8e-116]} {RNA1509_12151, RNA1509_45559} {RNA1310_4115.1, RNA1509_45559} {RNA1509_45559, RNA815_2374}
2.	MligTC455_20115	3156	65.75	Mlig455_013288, Mlig455_035933	Neo: - Age: -	CDH7	3.629	0.917	-	0.832	0.968	0.912	-	Mlig455_013288 {REF} {Length: 1147} {Pfam: Cadherin domain [PF00028.19, score=75.0]} {Human: ENSG00000081138, CDH7, cadherin 7, [Score=86.7, Expect=1e-18]; ENSG00000138650, PCDH10, protocadherin 10, [Score=84.3, Expect=7e-18]; ENSG00000165323, FAT3, FAT atypical cadherin 3, [Score=84.3, Expect=9e-18]; ENSG00000282908, FAT3, FAT atypical cadherin 3, [Score=84.3, Expect=9e-18]} {Mouse: ENSMUSG00000055333, Fat2, FAT atypical cadherin 2, [Score=86.7, Expect=1e-18]; ENSMUSG00000026312, Cdh7, cadherin 7, type 2, [Score=86.7, Expect=9e-19]; ENSMUSG00000102692, Dchs2, dachsous cadherin related 2, [Score=85.1, Expect=3e-18]; ENSMUSG00000074505, Fat3, FAT atypical cadherin 3, [Score=84.7, Expect=4e-18]; ENSMUSG00000049100, Pcdh10, protocadherin 10, [Score=84.3, Expect=5e-18]; ENSMUSG00000036862, Dchs1, dachsous cadherin related 1, [Score=82.4, Expect=3e-17]} {Dmel: FBgn0001075, ft, fat, [Score=78.6, Expect=4e-16]} {Celegans: WBGene00000396, cdh-4, Cadherin-4, [Score=62.0, Expect=1e-10]} {Smed: dd_Smed_v6_13155_0_1, dd_Smed_v6_13155_0_1, [Score=80.9, Expect=3e-17]} {RNA1509_10914, RNA1509_9301} {RNA1310_820, RNA1509_10914} {RNA1509_10914, RNA815_14374} Mlig455_035933 {REF} {Length: 1255} {Pfam: Cadherin domain [PF00028.19, score=75.4]} {Human: ENSG00000081138, CDH7, cadherin 7, [Score=87.8, Expect=3e-19]} {Mouse: ENSMUSG00000026312, Cdh7, cadherin 7, type 2, [Score=87.4, Expect=3e-19]; ENSMUSG00000055333, Fat2, FAT atypical cadherin 2, [Score=86.3, Expect=8e-19]; ENSMUSG00000102692, Dchs2, dachsous cadherin related 2, [Score=86.3, Expect=9e-19]; ENSMUSG00000036862, Dchs1, dachsous cadherin related 1, [Score=84.0, Expect=5e-18]} {Dmel: FBgn0001075, ft, fat, [Score=79.7, Expect=1e-16]} {Celegans: WBGene00000396, cdh-4, Cadherin-4, [Score=62.0, Expect=9e-11]} {Smed: dd_Smed_v6_11223_0_1, dd_Smed_v6_11223_0_1, [Score=79.3, Expect=6e-17]} {RNA1509_9301} {RNA1310_820} {RNA815_14374}
3.	MligTC455_44057	140	2.92	Mlig455_007132	Neo: - Age: -	PBX4	1.665	-	-	0.708	-	0.957	-	Mlig455_007132 {REF} {Length: 2410} {Pfam: Homeobox KN domain [PF05920.13, score=45.0]; Homeodomain [PF00046.31, score=44.6]} {Human: ENSG00000105717, PBX4, PBX homeobox 4, [Score=57.0, Expect=4e-08]; ENSG00000225987, PBX2, PBX homeobox 2, [Score=55.8, Expect=1e-07]; ENSG00000224952, PBX2, PBX homeobox 2, [Score=55.8, Expect=1e-07]; ENSG00000206315, PBX2, PBX homeobox 2, [Score=55.8, Expect=1e-07]; ENSG00000204304, PBX2, PBX homeobox 2, [Score=55.8, Expect=1e-07]; ENSG00000232005, PBX2, PBX homeobox 2, [Score=55.8, Expect=1e-07]; ENSG00000236353, PBX2, PBX homeobox 2, [Score=55.8, Expect=1e-07]; ENSG00000237344, PBX2, PBX homeobox 2, [Score=55.8, Expect=1e-07]; ENSG00000185630, PBX1, PBX homeobox 1, [Score=55.1, Expect=2e-07]} {Mouse: ENSMUSG00000034673, Pbx2, pre B cell leukemia homeobox 2, [Score=55.5, Expect=8e-08]; ENSMUSG00000031860, Pbx4, pre B cell leukemia homeobox 4, [Score=55.1, Expect=1e-07]; ENSMUSG00000052534, Pbx1, pre B cell leukemia homeobox 1, [Score=55.1, Expect=1e-07]; ENSMUSG00000038718, Pbx3, pre B cell leukemia homeobox 3, [Score=53.1, Expect=4e-07]} {Dmel: FBgn0000611, exd, extradenticle, [Score=56.2, Expect=4e-08]} {Celegans: WBGene00000443, ceh-20, Homeobox protein ceh-20, [Score=49.7, Expect=3e-06]} {Smed: dd_Smed_v6_7324_0_1, dd_Smed_v6_7324_0_1, [RH, Score=98.6, Expect=4e-22]} {RNA1310_13235} {RNA815_16233}
4.	MligTC455_16898	256	5.32	Mlig455_054659	Neo: - Age: logFC(26M/2M)=0.653		0.966	-	-	-	-	0.966	-	Mlig455_054659 {REF} {Length: 883} {RNA1509_34832} {RNA1310_22335} {RNA815_10376}
5.	MligTC455_25128	376	7.84	Mlig455_037046	Neo: Irradiation Age: -	GPR75-ASB3	0.966	-	-	-	-	-	0.966	Mlig455_037046 {REF} {Length: 3814} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=114.7]; Ankyrin repeats (many copies) [PF13637.8, score=89.9]; Ankyrin repeats (many copies) [PF13857.8, score=83.0]; Ankyrin repeat [PF13606.8, score=78.8]; Ankyrin repeat [PF00023.32, score=70.5]; SOCS box [PF07525.18, score=35.8]} {Human: ENSG00000270898, GPR75-ASB3, GPR75-ASB3 readthrough, [Score=105, Expect=2e-23]; ENSG00000115239, ASB3, ankyrin repeat and SOCS box containing 3, [Score=105, Expect=1e-23]} {Mouse: ENSMUSG00000020305, Asb3, ankyrin repeat and SOCS box-containing 3, [Score=99.0, Expect=9e-22]} {Dmel: FBgn0011747, Ank, Ankyrin, [Score=85.1, Expect=4e-17]} {Celegans: WBGene00019782, M60.7, [RH, Score=133, Expect=4e-34]} {Smed: dd_Smed_v6_2072_0_8, dd_Smed_v6_2072_0_8, [Score=90.9, Expect=4e-19]} {RNA1509_11976} {RNA1310_19298, RNA1509_11976} {RNA1509_11976, RNA815_7424.1}
6.	MligTC455_14896	40	0.84	Mlig455_036869	Neo: - Age: -	SYT16	0.962	-	-	-	-	0.962	-	Mlig455_036869 {REF} {Length: 2103} {TRANSSPLICED} {Pfam: C2 domain [PF00168.32, score=30.7]} {Human: ENSG00000139973, SYT16, synaptotagmin 16, [Score=154, Expect=2e-39]} {Mouse: ENSMUSG00000016200, Syt14, synaptotagmin XIV, [Score=138, Expect=6e-34]} {Dmel: FBgn0261086, Syt14, Synaptotagmin 14, [Score=127, Expect=1e-30]} {Celegans: WBGene00004924, snt-4, SyNapTotagmin, [Score=57.8, Expect=8e-09]} {Smed: dd_Smed_v6_9164_0_3, dd_Smed_v6_9164_0_3, [Score=115, Expect=1e-27]} {RNA1509_28160} {RNA1310_13696} {RNA815_4420.1}
7.	MligTC455_29138	150	3.13	Mlig455_047030	Neo: - Age: Up-Down-Up	EFR3A	0.96	-	-	-	-	0.960	-	Mlig455_047030 {REF} {Length: 5267} {TRANSSPLICED} {Pfam: ZIP Zinc transporter [PF02535.24, score=66.2]} {Human: ENSG00000132294, EFR3A, EFR3 homolog A, [RH, Score=343, Expect=2e-103]; ENSG00000084710, EFR3B, EFR3 homolog B, [RH, Score=327, Expect=2e-97]} {Mouse: ENSMUSG00000015002, Efr3a, EFR3 homolog A, [Score=346, Expect=4e-104]} {Dmel: FBgn0086784, stmA, stambha A, [Score=315, Expect=4e-93]} {Celegans: WBGene00016311, C32D5.3, Protein EFR3 homolog, [Score=249, Expect=2e-69]} {Smed: dd_Smed_v6_3212_0_1, dd_Smed_v6_3212_0_1, [RH, Score=397, Expect=5e-123]} {RNA1509_14238} {RNA1310_2165.2} {RNA815_4536}
8.	MligTC455_53569	852	17.74	Mlig455_008596	Neo: - Age: Up-Down-Down	TRPA1	0.958	-	-	-	-	0.958	-	Mlig455_008596 {REF} {Length: 5370} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=271.5]; Ankyrin repeats (many copies) [PF13637.8, score=203.7]; Ankyrin repeats (many copies) [PF13857.8, score=200.0]; Ankyrin repeat [PF00023.32, score=189.9]; Ankyrin repeat [PF13606.8, score=167.9]; Ion transport protein [PF00520.33, score=42.5]} {Human: ENSG00000104321, TRPA1, transient receptor potential cation channel subfamily A member 1, [Score=308, Expect=2e-87]} {Mouse: ENSMUSG00000032769, Trpa1, transient receptor potential cation channel, subfamily A, member 1, [Score=320, Expect=2e-91]} {Dmel: FBgn0035934, TrpA1, Transient receptor potential cation channel A1, [Score=310, Expect=9e-88]} {Celegans: WBGene00007801, trpa-1, Transient receptor potential cation channel subfamily A member 1 homolog, [Score=500, Expect=5e-157]} {Smed: dd_Smed_v6_6201_0_1, dd_Smed_v6_6201_0_1, [Score=695, Expect=0.0]} {RNA1509_8472} {RNA1310_1590.1} {RNA815_450.1}
9.	MligTC455_40427	305	6.35	Mlig455_000333, Mlig455_067934	Neo: - Age: -	CDK14	0.955	-	-	-	-	0.955	-	Mlig455_000333 {REF} {Length: 2008} {Pfam: Protein kinase domain [PF00069.27, score=224.1]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=109.2]; SOCE-associated regulatory factor of calcium homoeostasis [PF06682.14, score=20.9]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=20.2]; Macoilin family [PF09726.11, score=20.0]} {Human: ENSG00000058091, CDK14, cyclin dependent kinase 14, [Score=394, Expect=3e-133]} {Mouse: ENSMUSG00000028926, Cdk14, cyclin-dependent kinase 14, [Score=394, Expect=2e-133]} {Dmel: FBgn0005640, Eip63E, Ecdysone-induced protein 63E, [Score=387, Expect=2e-129]} {Celegans: WBGene00003961, pct-1, Cyclin-dependent kinase 17, [Score=325, Expect=6e-105]} {Smed: dd_Smed_v6_11023_0_1, dd_Smed_v6_11023_0_1, [Score=410, Expect=4e-136]} {RNA1509_30378} {RNA1310_18735} {RNA815_31307} Mlig455_067934 {REF} {Length: 2625} {Human: ENSG00000058091, CDK14, cyclin dependent kinase 14, [Score=110, Expect=1e-25]; ENSG00000138395, CDK15, cyclin dependent kinase 15, [Score=105, Expect=3e-24]} {Mouse: ENSMUSG00000028926, Cdk14, cyclin-dependent kinase 14, [Score=110, Expect=1e-25]} {Dmel: FBgn0005640, Eip63E, Ecdysone-induced protein 63E, [Score=100, Expect=3e-22]} {Celegans: WBGene00003961, pct-1, Cyclin-dependent kinase 17, [Score=94.0, Expect=4e-20]} {Smed: dd_Smed_v6_11023_0_1, dd_Smed_v6_11023_0_1, [Score=106, Expect=3e-24]} {RNA1310_55254.2} {RNA815_31307}
10.	MligTC455_39708	428	8.91	Mlig455_037474, Mlig455_044499	Neo: - Age: - Region-enriched R4: 3.201/0.00580	LIMD1	0.951	-	-	-	-	0.951	-	Mlig455_037474 {REF} {Length: 2250} {Pfam: LIM domain [PF00412.24, score=93.6]} {Human: ENSG00000144791, LIMD1, LIM domains containing 1, [RH, Score=236, Expect=3e-70]; ENSG00000142279, WTIP, WT1 interacting protein, [RH, Score=229, Expect=1e-69]} {Mouse: ENSMUSG00000025239, Limd1, LIM domains containing 1, [RH, Score=237, Expect=2e-70]; ENSMUSG00000036459, Wtip, WT1-interacting protein, [RH, Score=230, Expect=9e-71]} {Dmel: FBgn0030530, jub, Ajuba LIM protein, [RH, Score=238, Expect=2e-70]} {Celegans: WBGene00006999, zyx-1, Zyxin, [RH, Score=159, Expect=2e-42]} {Smed: dd_Smed_v6_9489_0_2, dd_Smed_v6_9489_0_2, [RH, Score=209, Expect=1e-62]} {RNA1509_31264} {RNA1310_14704.1} {RNA815_28506.1} Mlig455_044499 {REF} {Length: 3868} {Pfam: LIM domain [PF00412.24, score=93.4]; Protein of unknown function (DUF2722) [PF10846.10, score=27.4]} {Human: ENSG00000144791, LIMD1, LIM domains containing 1, [RH, Score=239, Expect=3e-71]; ENSG00000142279, WTIP, WT1 interacting protein, [RH, Score=231, Expect=2e-70]} {Mouse: ENSMUSG00000025239, Limd1, LIM domains containing 1, [RH, Score=239, Expect=2e-71]; ENSMUSG00000036459, Wtip, WT1-interacting protein, [RH, Score=233, Expect=8e-72]} {Dmel: FBgn0030530, jub, Ajuba LIM protein, [RH, Score=239, Expect=3e-71]} {Celegans: WBGene00006999, zyx-1, Zyxin, [RH, Score=159, Expect=1e-42]} {Smed: dd_Smed_v6_9489_0_1, dd_Smed_v6_9489_0_1, [RH, Score=208, Expect=2e-62]} {RNA1310_14704.1} {RNA815_28506.1}

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