M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_35517

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_35517 1775 36.99 Mlig455_058832

Neo: -

Age: -

 SPEN Mlig455_058832 {REF} {Length: 6056} {Pfam: SPOC domain [PF07744.15, score=114.2]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=81.8]; Occluded RNA-recognition motif [PF16842.7, score=34.0]} {Human: ENSG00000065526, SPEN, spen family transcriptional repressor, [RH, Score=208, Expect=2e-53]} {Mouse: ENSMUSG00000040761, Spen, spen family transcription repressor, [RH, Score=209, Expect=1e-53]} {Dmel: FBgn0016977, spen, split ends, [RH, Score=204, Expect=3e-52]} {Celegans: WBGene00008549, din-1, Daf-12-interacting protein 1, [RH, Score=97.8, Expect=6e-20]} {Smed: dd_Smed_v6_6458_0_1, dd_Smed_v6_6458_0_1, [Score=187, Expect=2e-47]} {RNA1509_1106, RNA1509_18970, RNA1509_57047} {RNA1310_665, RNA1509_1106, RNA1509_18970, RNA1509_57047} {RNA1509_1106, RNA1509_18970, RNA1509_57047, RNA815_665}

Cumulative graph for MligTC455_35517

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.161 5.4 0.82285 1.00000
RegionR2 0.775 5.4 0.03577 0.21782
RegionR3 -0.32 5.4 0.31127 0.85070
RegionR4 -0.337 5.4 0.34278 0.66322
RegionR5 -0.025 5.4 0.93071 1.00000
RegionR6 -0.263 5.4 0.40206 0.97312
RegionR7 0.383 5.4 0.27516 0.90597
RegionR8 -0.051 5.4 0.91208 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.919 5.4 0.39982 1.00000
RegenerationR2 0.167 5.4 0.61473 0.92112
RegenerationR3 0.662 5.4 0.07816 0.46207
RegenerationR4 0.277 5.4 0.46757 0.85208
RegenerationR5 0.173 5.4 0.61909 0.91832
RegenerationR6 0.809 5.4 0.02890 0.21181
RegenerationBL 0.562 5.4 0.13987 0.44566
RegenerationTP -0.705 5.4 0.12301 0.53177


Genes with expression patterns similar to MligTC455_35517

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_35517 1775 36.99 Mlig455_058832

Neo: -

Age: -

 SPEN 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_058832 {REF} {Length: 6056} {Pfam: SPOC domain [PF07744.15, score=114.2]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=81.8]; Occluded RNA-recognition motif [PF16842.7, score=34.0]} {Human: ENSG00000065526, SPEN, spen family transcriptional repressor, [RH, Score=208, Expect=2e-53]} {Mouse: ENSMUSG00000040761, Spen, spen family transcription repressor, [RH, Score=209, Expect=1e-53]} {Dmel: FBgn0016977, spen, split ends, [RH, Score=204, Expect=3e-52]} {Celegans: WBGene00008549, din-1, Daf-12-interacting protein 1, [RH, Score=97.8, Expect=6e-20]} {Smed: dd_Smed_v6_6458_0_1, dd_Smed_v6_6458_0_1, [Score=187, Expect=2e-47]} {RNA1509_1106, RNA1509_18970, RNA1509_57047} {RNA1310_665, RNA1509_1106, RNA1509_18970, RNA1509_57047} {RNA1509_1106, RNA1509_18970, RNA1509_57047, RNA815_665}
2. MligTC455_37133 268 5.59 Mlig455_043392, Mlig455_043417

Neo: -

Age: Up-Down-Up

 1.717 - - - 0.957 0.760 -

Mlig455_043392 {REF} {Length: 439} {NoTransDecoderORF} {RNA1310_19221} {RNA815_21047}

Mlig455_043417 {REF} {Length: 2334} {NoTransDecoderORF} {RNA1509_57581} {RNA1310_19221} {RNA815_8982.1}
3. MligTC455_52960 2270 47.28 Mlig455_013223, Mlig455_013250, Mlig455_013318

Neo: -

Age: -

 SLC38A10 1.695 - - - 0.966 0.729 -

Mlig455_013223 {REF} {Length: 1995} {TRANSSPLICED} {Pfam: Transmembrane amino acid transporter protein [PF01490.20, score=163.9]; Tryptophan/tyrosine permease family [PF03222.15, score=28.2]} {Human: ENSG00000157637, SLC38A10, solute carrier family 38 member 10, [Score=244, Expect=1e-71]} {Mouse: ENSMUSG00000061306, Slc38a10, solute carrier family 38, member 10, [Score=247, Expect=3e-71]} {Dmel: FBgn0050394, CG30394, [Score=213, Expect=2e-60]} {Celegans: WBGene00021765, Y51F10.4, [Score=180, Expect=8e-50]} {Smed: dd_Smed_v6_11525_0_1, dd_Smed_v6_11525_0_1, [Score=203, Expect=4e-60]} {RNA1509_15934} {RNA1310_24099, RNA1509_15934} {RNA1509_15934, RNA815_5073.1}

Mlig455_013250 {REF} {Length: 1771} {TRANSSPLICED} {Pfam: Transmembrane amino acid transporter protein [PF01490.20, score=88.7]} {Human: ENSG00000157637, SLC38A10, solute carrier family 38 member 10, [Score=126, Expect=1e-30]} {Mouse: ENSMUSG00000061306, Slc38a10, solute carrier family 38, member 10, [Score=130, Expect=3e-32]} {Dmel: FBgn0050394, CG30394, [Score=133, Expect=2e-33]} {Celegans: WBGene00021765, Y51F10.4, [Score=98.2, Expect=8e-22]} {Smed: dd_Smed_v6_11525_0_1, dd_Smed_v6_11525_0_1, [Score=117, Expect=6e-29]} {RNA1509_15934} {RNA1310_28648.1} {RNA815_5073.1}

Mlig455_013318 {REF} {Length: 1970} {TRANSSPLICED} {Pfam: Transmembrane amino acid transporter protein [PF01490.20, score=164.1]; Tryptophan/tyrosine permease family [PF03222.15, score=28.7]} {Human: ENSG00000157637, SLC38A10, solute carrier family 38 member 10, [Score=244, Expect=9e-72]} {Mouse: ENSMUSG00000061306, Slc38a10, solute carrier family 38, member 10, [Score=246, Expect=4e-71]} {Dmel: FBgn0050394, CG30394, [Score=213, Expect=2e-60]} {Celegans: WBGene00021765, Y51F10.4, [Score=180, Expect=7e-50]} {Smed: dd_Smed_v6_11525_0_1, dd_Smed_v6_11525_0_1, [Score=204, Expect=3e-60]} {RNA1509_15934} {RNA1310_24099} {RNA815_5073.1}
4. MligTC455_45780 1319 27.49 Mlig455_034009, Mlig455_060388

Neo: -

Age: -

Region-enriched R4: 1.293/0.00518

Regeneration-upregulated BL: 1.725

Regeneration-enriched BL: 1.725

 STRN3 0.969 - - - 0.969 - -

Mlig455_034009 {REF} {Length: 4926} {Pfam: Striatin family [PF08232.14, score=152.1]; WD domain, G-beta repeat [PF00400.34, score=106.3]; Transcription factor IIA, alpha/beta subunit [PF03153.15, score=25.8]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=22.2]} {Human: ENSG00000196792, STRN3, striatin 3, [Score=313, Expect=9e-94]; ENSG00000115808, STRN, striatin, [Score=308, Expect=4e-92]; ENSG00000090372, STRN4, striatin 4, [Score=301, Expect=8e-91]} {Mouse: ENSMUSG00000020954, Strn3, striatin, calmodulin binding protein 3, [Score=485, Expect=3e-159]} {Dmel: FBgn0044323, Cka, Connector of kinase to AP-1, [Score=303, Expect=6e-91]} {Celegans: WBGene00010631, cash-1, CKA And Striatin Homolog, [RH, Score=283, Expect=4e-84]} {Smed: dd_Smed_v6_8286_0_1, dd_Smed_v6_8286_0_1, [Score=266, Expect=3e-77]} {RNA1509_18009, RNA1509_4159, RNA1509_8508} {RNA1310_1645.1, RNA1509_18009, RNA1509_8508} {RNA1509_18009, RNA1509_8508, RNA815_5062}

Mlig455_060388 {REF} {Length: 5034} {Pfam: Striatin family [PF08232.14, score=152.1]; WD domain, G-beta repeat [PF00400.34, score=106.3]; Transcription factor IIA, alpha/beta subunit [PF03153.15, score=25.8]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=22.0]} {Human: ENSG00000196792, STRN3, striatin 3, [Score=312, Expect=2e-93]; ENSG00000115808, STRN, striatin, [Score=308, Expect=8e-92]; ENSG00000090372, STRN4, striatin 4, [Score=300, Expect=2e-90]} {Mouse: ENSMUSG00000020954, Strn3, striatin, calmodulin binding protein 3, [Score=484, Expect=7e-159]} {Dmel: FBgn0044323, Cka, Connector of kinase to AP-1, [Score=303, Expect=8e-91]} {Celegans: WBGene00010631, cash-1, CKA And Striatin Homolog, [RH, Score=283, Expect=6e-84]} {Smed: dd_Smed_v6_8286_0_1, dd_Smed_v6_8286_0_1, [Score=266, Expect=6e-77]} {RNA1509_41485, RNA1509_4159} {RNA1310_1645.1, RNA1509_41485, RNA1509_4159} {RNA1509_41485, RNA1509_4159, RNA815_5062}
5. MligTC455_39347 447 9.31 Mlig455_064697

Neo: -

Age: -

 WDR47 0.958 - - - - - 0.958 Mlig455_064697 {REF} {Length: 6013} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=73.3]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=37.2]} {Human: ENSG00000085433, WDR47, WD repeat domain 47, [RH, Score=323, Expect=6e-96]} {Mouse: ENSMUSG00000040389, Wdr47, WD repeat domain 47, [RH, Score=325, Expect=8e-97]} {Dmel: FBgn0034931, CG2812, [RH, Score=283, Expect=3e-87]} {Celegans: WBGene00019434, nmtn-1, NeMiTiN (Neuronal enriched MAP interacting protein) homolog, [RH, Score=272, Expect=5e-78]} {Smed: dd_Smed_v6_3366_0_2, dd_Smed_v6_3366_0_2, [Score=613, Expect=0.0]} {RNA1509_13686, RNA1509_20380, RNA1509_53421} {RNA1310_4648, RNA1509_13686, RNA1509_20380, RNA1509_53421} {RNA1509_13686, RNA1509_20380, RNA1509_53421, RNA815_13490}
6. MligTC455_41744 975 20.32 Mlig455_043745, Mlig455_047480

Neo: -

Age: -

 CERS5 0.955 - - - 0.955 - -

Mlig455_043745 {REF} {Length: 2514} {TRANSSPLICED} {Pfam: TLC domain [PF03798.18, score=143.0]; Homeodomain [PF00046.31, score=27.4]} {Human: ENSG00000139624, CERS5, ceramide synthase 5, [RH, Score=249, Expect=2e-79]; ENSG00000143418, CERS2, ceramide synthase 2, [RH, Score=239, Expect=1e-75]; ENSG00000172292, CERS6, ceramide synthase 6, [RH, Score=238, Expect=7e-75]} {Mouse: ENSMUSG00000023021, Cers5, ceramide synthase 5, [RH, Score=269, Expect=6e-87]} {Dmel: FBgn0040918, schlank, [RH, Score=226, Expect=1e-70]} {Celegans: WBGene00002043, hyl-1, Ceramide synthase hyl-1, [RH, Score=159, Expect=4e-46]} {Smed: dd_Smed_v6_4223_0_1, dd_Smed_v6_4223_0_1, [RH, Score=236, Expect=5e-75]} {RNA1509_46469, RNA1509_47741} {RNA1310_13424.2, RNA1509_47741} {RNA1509_47741, RNA815_10078.1}

Mlig455_047480 {REF} {Length: 2921} {Pfam: TLC domain [PF03798.18, score=143.0]; Homeodomain [PF00046.31, score=27.4]} {Human: ENSG00000139624, CERS5, ceramide synthase 5, [RH, Score=249, Expect=3e-79]; ENSG00000143418, CERS2, ceramide synthase 2, [RH, Score=239, Expect=1e-75]; ENSG00000172292, CERS6, ceramide synthase 6, [RH, Score=237, Expect=8e-75]} {Mouse: ENSMUSG00000023021, Cers5, ceramide synthase 5, [RH, Score=270, Expect=2e-87]} {Dmel: FBgn0040918, schlank, [RH, Score=227, Expect=4e-71]} {Celegans: WBGene00002043, hyl-1, Ceramide synthase hyl-1, [RH, Score=159, Expect=4e-46]} {Smed: dd_Smed_v6_4223_0_1, dd_Smed_v6_4223_0_1, [RH, Score=234, Expect=1e-74]} {RNA1509_46469} {RNA1310_13424.2} {RNA815_10078.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA