M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_40769

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_40769 26 0.54 Mlig455_007570

Neo: -

Age: -

 SIX1 Mlig455_007570 {REF} {Length: 3034} {Pfam: Transcriptional regulator, SIX1, N-terminal SD domain [PF16878.7, score=158.1]; Homeodomain [PF00046.31, score=52.2]; Homeobox KN domain [PF05920.13, score=46.6]} {Human: ENSG00000126778, SIX1, SIX homeobox 1, [RH, Score=343, Expect=3e-116]; ENSG00000170577, SIX2, SIX homeobox 2, [RH, Score=341, Expect=4e-115]} {Mouse: ENSMUSG00000051367, Six1, sine oculis-related homeobox 1, [RH, Score=343, Expect=2e-116]; ENSMUSG00000024134, Six2, sine oculis-related homeobox 2, [RH, Score=342, Expect=1e-115]} {Dmel: FBgn0003460, so, sine oculis, [RH, Score=343, Expect=1e-114]} {Celegans: WBGene00000454, ceh-33, Homeobox protein ceh-33, [RH, Score=254, Expect=3e-82]} {Smed: dd_Smed_v6_9774_0_1, dd_Smed_v6_9774_0_1, [RH, Score=357, Expect=5e-119]} {RNA1509_55511} {RNA1310_57635} {RNA815_51085}

Cumulative graph for MligTC455_40769

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -4.705 1.008 0.99963 1.00000
RegionR2 4.296 1.008 0.02042 0.15519
RegionR3 0.916 1.008 0.52257 1.00000
RegionR4 0.378 1.008 0.61814 0.92833
RegionR5 -0.248 1.008 0.79765 1.00000
RegionR6 2.929 1.008 0.06616 0.48120
RegionR7 -1.655 1.008 0.99984 1.00000
RegionR8 -1.912 1.008 0.99991 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 2.056 1.008 0.99989 1.00000
RegenerationR2 -0.939 1.008 0.53055 0.88440
RegenerationR3 2.361 1.008 0.15748 0.58947
RegenerationR4 0.648 1.008 0.70400 0.95539
RegenerationR5 3.97 1.008 0.00392 0.11175
RegenerationR6 1.822 1.008 0.16338 0.49280
RegenerationBL -0.256 1.008 0.99968 1.00000
RegenerationTP 4.94 1.008 0.07218 0.43098


Genes with expression patterns similar to MligTC455_40769

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_40769 26 0.54 Mlig455_007570

Neo: -

Age: -

 SIX1 4 1.000 - - 1.000 1.000 1.000 Mlig455_007570 {REF} {Length: 3034} {Pfam: Transcriptional regulator, SIX1, N-terminal SD domain [PF16878.7, score=158.1]; Homeodomain [PF00046.31, score=52.2]; Homeobox KN domain [PF05920.13, score=46.6]} {Human: ENSG00000126778, SIX1, SIX homeobox 1, [RH, Score=343, Expect=3e-116]; ENSG00000170577, SIX2, SIX homeobox 2, [RH, Score=341, Expect=4e-115]} {Mouse: ENSMUSG00000051367, Six1, sine oculis-related homeobox 1, [RH, Score=343, Expect=2e-116]; ENSMUSG00000024134, Six2, sine oculis-related homeobox 2, [RH, Score=342, Expect=1e-115]} {Dmel: FBgn0003460, so, sine oculis, [RH, Score=343, Expect=1e-114]} {Celegans: WBGene00000454, ceh-33, Homeobox protein ceh-33, [RH, Score=254, Expect=3e-82]} {Smed: dd_Smed_v6_9774_0_1, dd_Smed_v6_9774_0_1, [RH, Score=357, Expect=5e-119]} {RNA1509_55511} {RNA1310_57635} {RNA815_51085}
2. MligTC455_21528 367 7.64 Mlig455_015393, Mlig455_015396

Neo: Int S/G2/M

Age: -

 ASCC3 0.981 - - - - 0.981 -

Mlig455_015393 {REF} {Length: 8035} {Pfam: Sec63 Brl domain [PF02889.18, score=439.6]; DEAD/DEAH box helicase [PF00270.31, score=178.1]; Type III restriction enzyme, res subunit [PF04851.17, score=81.0]; Helicase conserved C-terminal domain [PF00271.33, score=48.8]; AAA domain [PF13401.8, score=30.9]; AAA domain [PF13604.8, score=30.2]; AAA domain [PF13245.8, score=22.7]} {Human: ENSG00000112249, ASCC3, activating signal cointegrator 1 complex subunit 3, [RH, Score=2188, Expect=0.0]} {Mouse: ENSMUSG00000038774, Ascc3, activating signal cointegrator 1 complex subunit 3, [RH, Score=2186, Expect=0.0]} {Dmel: FBgn0038344, obe, obelus, [RH, Score=1927, Expect=0.0]} {Celegans: WBGene00013189, Y54E2A.4, [RH, Score=1679, Expect=0.0]} {Smed: dd_Smed_v6_11140_0_1, dd_Smed_v6_11140_0_1, [RH, Score=1927, Expect=0.0]} {RNA1509_2241, RNA1509_55312} {RNA1310_438, RNA1509_2241, RNA1509_55312} {RNA1509_2241, RNA1509_55312, RNA815_146.1}

Mlig455_015396 {REF} {Length: 7701} {Pfam: Sec63 Brl domain [PF02889.18, score=440.8]; DEAD/DEAH box helicase [PF00270.31, score=177.4]; Type III restriction enzyme, res subunit [PF04851.17, score=80.9]; Helicase conserved C-terminal domain [PF00271.33, score=48.4]; AAA domain [PF13401.8, score=30.9]; AAA domain [PF13604.8, score=30.1]; AAA domain [PF13245.8, score=22.2]} {Human: ENSG00000112249, ASCC3, activating signal cointegrator 1 complex subunit 3, [RH, Score=2188, Expect=0.0]} {Mouse: ENSMUSG00000038774, Ascc3, activating signal cointegrator 1 complex subunit 3, [RH, Score=2187, Expect=0.0]} {Dmel: FBgn0038344, obe, obelus, [RH, Score=1927, Expect=0.0]} {Celegans: WBGene00013189, Y54E2A.4, [RH, Score=1677, Expect=0.0]} {Smed: dd_Smed_v6_11140_0_1, dd_Smed_v6_11140_0_1, [RH, Score=1929, Expect=0.0]} {RNA1509_2241} {RNA1310_438} {RNA815_146.1}
3. MligTC455_17453 19 0.4 Mlig455_023103

Neo: -

Age: -

 0.98 - - - - 0.980 - Mlig455_023103 {REF} {Length: 775} {NoTransDecoderORF}
4. MligTC455_07427 99 2.05 Mlig455_028172

Neo: -

Age: logFC(26M/2M)=0.806

Region-enriched R5: 4.613/0.00039

 0.979 - - - - - 0.979 Mlig455_028172 {REF} {Length: 666} {RNA1509_40406} {RNA1310_81489} {RNA815_42638}
5. MligTC455_08100 25 0.52 Mlig455_016439

Neo: -

Age: -

 0.972 - - - - - 0.972 Mlig455_016439 {REF} {Length: 1194} {NoTransDecoderORF}
6. MligTC455_43445 98 2.05 Mlig455_043288

Neo: -

Age: -

 0.971 - - - - - 0.971 Mlig455_043288 {REF} {Length: 1770} {TRANSSPLICED} {Pfam: NICE-3 protein [PF07406.13, score=86.6]} {Dmel: FBgn0034172, CG6665, [Score=57.8, Expect=2e-09]} {RNA1509_24375} {RNA1310_15514.2} {RNA815_13288}
7. MligTC455_09112 179 3.73 Mlig455_032061

Neo: -

Age: Down-Up-Up

 0.968 - - - - 0.968 - Mlig455_032061 {REF} {Length: 945} {RNA1509_33478} {RNA1310_75644} {RNA815_39109}
8. MligTC455_13227 114 2.38 Mlig455_059425

Neo: -

Age: -

Region-enriched R5: 3.436/0.00076

 0.967 - - - - - 0.967 Mlig455_059425 {REF} {Length: 2024} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=28.8]} {RNA1509_50589} {RNA1310_17944, RNA1509_50589} {RNA1509_50589, RNA815_7628}
9. MligTC455_24973 42 0.88 Mlig455_065756

Neo: -

Age: -

 0.964 - - - - - 0.964 Mlig455_065756 {REF} {Length: 759} {RNA1509_29619} {RNA1310_124411} {RNA815_54604}
10. MligTC455_41389 111 2.31 Mlig455_024385

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_024385 {REF} {Length: 569} {NoTransDecoderORF} {RNA1509_15591} {RNA1310_81202.1} {RNA815_31796}
11. MligTC455_46056 15 0.3 Mlig455_026871

Neo: -

Age: -

 PCBD1 0.959 - - - - - 0.959 Mlig455_026871 {REF} {Length: 510} {TRANSSPLICED} {Pfam: Pterin 4 alpha carbinolamine dehydratase [PF01329.21, score=104.4]} {Human: ENSG00000166228, PCBD1, pterin-4 alpha-carbinolamine dehydratase 1, [RH, Score=125, Expect=9e-38]} {Mouse: ENSMUSG00000020098, Pcbd1, pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1, [RH, Score=126, Expect=2e-38]} {Dmel: FBgn0024841, Pcd, pterin-4a-carbinolamine dehydratase, [RH, Score=130, Expect=8e-39]} {Celegans: WBGene00020397, pcbd-1, Putative pterin-4-alpha-carbinolamine dehydratase, [RH, Score=128, Expect=7e-39]} {Smed: dd_Smed_v6_1214_0_1, dd_Smed_v6_1214_0_1, [RH, Score=114, Expect=7e-34]} {RNA1509_56343} {RNA1310_47859.1} {RNA815_17315.2}
12. MligTC455_12952 9278 193.29 Mlig455_008006

Neo: -

Age: logFC(26M/2M)=-0.567

Region-enriched R7: 6.161/0.00000
Region-enriched R8: 4.467/0.00006
Region-enriched R6: 3.169/0.01307

 ENPP1 0.957 - - - - 0.957 - Mlig455_008006 {REF} {Length: 1683} {Pfam: Type I phosphodiesterase / nucleotide pyrophosphatase [PF01663.24, score=285.2]; Sulfatase [PF00884.25, score=24.1]} {Human: ENSG00000197594, ENPP1, ectonucleotide pyrophosphatase/phosphodiesterase 1, [RH, Score=279, Expect=1e-84]; ENSG00000001561, ENPP4, ectonucleotide pyrophosphatase/phosphodiesterase 4, [RH, Score=278, Expect=8e-89]; ENSG00000154269, ENPP3, ectonucleotide pyrophosphatase/phosphodiesterase 3, [RH, Score=269, Expect=9e-83]} {Mouse: ENSMUSG00000023961, Enpp4, ectonucleotide pyrophosphatase/phosphodiesterase 4, [RH, Score=275, Expect=9e-88]; ENSMUSG00000037370, Enpp1, ectonucleotide pyrophosphatase/phosphodiesterase 1, [RH, Score=272, Expect=3e-82]; ENSMUSG00000023960, Enpp5, ectonucleotide pyrophosphatase/phosphodiesterase 5, [RH, Score=267, Expect=2e-84]} {Celegans: WBGene00007755, C27A7.3, Ectonucleotide pyrophosphatase/phosphodiesterase C27A7.3, [RH, Score=169, Expect=1e-45]} {Smed: dd_Smed_v6_9016_0_1, dd_Smed_v6_9016_0_1, [Score=211, Expect=1e-62]} {RNA1509_4220, RNA1509_939} {RNA1310_11833, RNA1509_4220} {RNA1509_4220, RNA815_4584.1}
13. MligTC455_52419 214 4.46 Mlig455_036527

Neo: Irradiation

Age: Down-Down-Up

Region-enriched R5: 4.262/0.00000

 0.955 - - - - - 0.955 Mlig455_036527 {REF} {Length: 2552} {Smed: dd_Smed_v6_2845_0_1, dd_Smed_v6_2845_0_1, [RH, Score=47.8, Expect=2e-07]} {RNA1509_3969} {RNA1310_16554, RNA1509_3969} {RNA1509_3969, RNA815_8939}
14. MligTC455_22679 279 5.8 Mlig455_007607

Neo: Irradiation

Age: -

Region-enriched R2: 7.337/0.00280
Region-enriched R5: 6.817/0.00000
Region-enriched R6: 5.853/0.00002

Regeneration-upregulated R4: 5.872

Regeneration-enriched R4: 5.872

 0.954 - - - - - 0.954 Mlig455_007607 {REF} {Length: 3073} {RNA1509_42678} {RNA1310_4329} {RNA815_1214.1}
15. MligTC455_34068 567 11.8 Mlig455_009664, Mlig455_010407, Mlig455_031612, Mlig455_050259, Mlig455_065768, Mlig455_066926

Neo: Irradiation

Age: -

Region-enriched R5: 5.319/0.00000
Region-enriched R2: 4.829/0.00239
Region-enriched R6: 3.861/0.00009

 0.952 - - - - - 0.952

Mlig455_009664 {REF} {Length: 141} {NoTransDecoderORF} {RNA1509_29619} {RNA1310_137182} {RNA815_43642}

Mlig455_010407 {REF} {Length: 1935} {Pfam: Domain of unknown function (DUF6471) [PF20075.1, score=82.7]; Clathrin-binding domain of Huntingtin-interacting protein 1 [PF16515.7, score=28.7]; Fibrinogen alpha/beta chain family [PF08702.12, score=19.1]} {Dmel: FBgn0034294, Muc55B, Mucin 55B, [Score=52.0, Expect=1e-06]} {RNA1509_29619} {RNA1310_30104} {RNA815_25795}

Mlig455_031612 {REF} {Length: 624} {RNA1509_29619} {RNA1310_118182} {RNA815_55861}

Mlig455_050259 {REF} {Length: 891} {RNA1509_29619} {RNA1310_18456} {RNA815_43862}

Mlig455_065768 {REF} {Length: 498} {RNA1509_29619} {RNA1310_124411} {RNA815_54604}

Mlig455_066926 {REF} {Length: 2079} {RNA1509_29619} {RNA1310_77715, RNA1509_29619} {RNA1509_29619, RNA815_17066.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA