M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_42789

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_42789 51 1.05 Mlig455_049242

Neo: -

Age: -

 Mlig455_049242 {REF} {Length: 2156} {NoTransDecoderORF} {RNA1509_49659} {RNA1310_121980} {RNA815_13521.1}

Cumulative graph for MligTC455_42789

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.912 1.334 0.99985 1.00000
RegionR2 1.276 1.334 0.51095 0.88875
RegionR3 2.011 1.334 0.25727 0.80158
RegionR4 -1.292 1.334 1.00000 1.00000
RegionR5 2.518 1.334 0.14309 0.39055
RegionR6 2.416 1.334 0.22238 0.80264
RegionR7 -1.903 1.334 0.99989 1.00000
RegionR8 -2.114 1.334 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.453 1.334 0.99983 1.00000
RegenerationR2 1.982 1.334 0.41162 0.82151
RegenerationR3 0.598 1.334 0.85909 1.00000
RegenerationR4 2.951 1.334 0.20146 0.64760
RegenerationR5 -0.357 1.334 0.79648 0.98767
RegenerationR6 0.663 1.334 0.87043 1.00000
RegenerationBL 2.142 1.334 0.41302 0.78239
RegenerationTP 4.434 1.334 0.18737 0.62469


Genes with expression patterns similar to MligTC455_42789

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_42789 51 1.05 Mlig455_049242

Neo: -

Age: -

 4 - - 1.000 1.000 1.000 1.000 Mlig455_049242 {REF} {Length: 2156} {NoTransDecoderORF} {RNA1509_49659} {RNA1310_121980} {RNA815_13521.1}
2. MligTC455_27213 42 0.87 Mlig455_002807

Neo: -

Age: -

 1.704 - - 0.975 0.729 - - Mlig455_002807 {REF} {Length: 5092} {TRANSSPLICED} {RNA1509_16719} {RNA1310_3342} {RNA815_12812}
3. MligTC455_10029 31 0.65 Mlig455_034776

Neo: -

Age: -

 FCN3 0.982 - - 0.982 - - - Mlig455_034776 {REF} {Length: 1488} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=116.8]} {Human: ENSG00000142748, FCN3, ficolin 3, [Score=98.2, Expect=4e-23]} {Mouse: ENSMUSG00000026725, Tnn, tenascin N, [Score=92.8, Expect=2e-20]; ENSMUSG00000026938, Fcna, ficolin A, [Score=88.2, Expect=2e-19]} {Dmel: FBgn0051832, CG31832, [Score=82.0, Expect=5e-18]} {Celegans: WBGene00020516, T15B7.1, [Score=59.3, Expect=8e-10]}
4. MligTC455_24273 48 1.01 Mlig455_005193

Neo: -

Age: -

 AC254952.1 0.982 - - 0.982 - - - Mlig455_005193 {REF} {Length: 1491} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=92.7]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=64.9]} {Human: ENSG00000282088, AC254952.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=124, Expect=2e-30]; ENSG00000274542, AC243734.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=122, Expect=8e-30]; ENSG00000175344, CHRNA7, cholinergic receptor nicotinic alpha 7 subunit, [Score=122, Expect=8e-30]} {Mouse: ENSMUSG00000030525, Chrna7, cholinergic receptor, nicotinic, alpha polypeptide 7, [Score=124, Expect=1e-30]; ENSMUSG00000031492, Chrnb3, cholinergic receptor, nicotinic, beta polypeptide 3, [Score=123, Expect=2e-30]} {Dmel: FBgn0086778, nAChRalpha7, nicotinic Acetylcholine Receptor alpha7, [Score=115, Expect=1e-27]} {Celegans: WBGene00017580, lgc-4, Ligand-gated ion channel 4, [Score=117, Expect=2e-28]} {Smed: dd_Smed_v6_8058_0_1, dd_Smed_v6_8058_0_1, [Score=114, Expect=2e-27]} {RNA1509_43533} {RNA1310_21349.2} {RNA815_39337}
5. MligTC455_06776 68 1.41 Mlig455_000689, Mlig455_000745

Neo: -

Age: -

 0.979 - - 0.979 - - -

Mlig455_000689 {REF} {Length: 1877} {Pfam: Mitochondrial Myo2 receptor-related protein [PF08505.12, score=19.0]} {RNA1509_21195} {RNA1310_20161.1} {RNA815_26275}

Mlig455_000745 {REF} {Length: 1899} {Pfam: Family of unknown function (DUF5308) [PF17233.4, score=20.9]} {RNA1509_21195} {RNA1310_20161.1} {RNA815_26275}
6. MligTC455_27552 72 1.5 Mlig455_015707

Neo: -

Age: -

 KIAA1586 0.974 - - 0.974 - - - Mlig455_015707 {REF} {Length: 4648} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF4371) [PF14291.8, score=25.9]} {Human: ENSG00000168116, KIAA1586, KIAA1586, [Score=65.1, Expect=3e-11]} {Smed: dd_Smed_v6_20085_0_5, dd_Smed_v6_20085_0_5, [Score=45.4, Expect=1e-05]} {RNA1509_33822} {RNA1310_2923, RNA1509_33822} {RNA1509_33822, RNA815_14993}
7. MligTC455_41357 94 1.95 Mlig455_011498

Neo: -

Age: -

Region-enriched R5: 4.393/0.03983

 0.971 - - - - - 0.971 Mlig455_011498 {REF} {Length: 1119} {NoTransDecoderORF} {RNA1310_47564}
8. MligTC455_40287 116 2.41 Mlig455_043891

Neo: -

Age: logFC(26M/2M)=-0.916

Regeneration-enriched BL: 6.689
Regeneration-enriched R2: 6.021

 0.97 - - - - 0.970 - Mlig455_043891 {REF} {Length: 4345} {RNA1509_22214} {RNA1310_39071, RNA1509_22214} {RNA1509_22214, RNA815_41273}
9. MligTC455_48199 16 0.33 Mlig455_069827

Neo: -

Age: Down-Up-Up

 YPEL1 0.969 - - - - - 0.969 Mlig455_069827 {REF} {Length: 539} {TRANSSPLICED} {Pfam: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly [PF03226.16, score=55.8]} {Human: ENSG00000100027, YPEL1, yippee like 1, [RH, Score=188, Expect=1e-62]; ENSG00000175155, YPEL2, yippee like 2, [RH, Score=188, Expect=8e-63]; ENSG00000090238, YPEL3, yippee like 3, [RH, Score=184, Expect=4e-61]} {Mouse: ENSMUSG00000018427, Ypel2, yippee like 2, [RH, Score=188, Expect=5e-63]; ENSMUSG00000022773, Ypel1, yippee like 1, [RH, Score=186, Expect=3e-62]; ENSMUSG00000042675, Ypel3, yippee like 3, [RH, Score=184, Expect=3e-61]} {Dmel: FBgn0030183, CG15309, [RH, Score=182, Expect=8e-61]} {Celegans: WBGene00009503, F37A8.5, Protein yippee-like F37A8.5, [RH, Score=185, Expect=9e-62]} {Smed: dd_Smed_v6_5855_0_1, dd_Smed_v6_5855_0_1, [RH, Score=177, Expect=4e-58]} {RNA1509_7200} {RNA1310_44257} {RNA815_7621}
10. MligTC455_35917 22 0.45 Mlig455_063779

Neo: -

Age: -

 0.967 - - - - - 0.967 Mlig455_063779 {REF} {Length: 902} {NoTransDecoderORF} {RNA1509_6383} {RNA1310_57084} {RNA815_4200.3}
11. MligTC455_46481 1143 23.81 Mlig455_030245

Neo: -

Age: logFC(26M/2M)=-0.408

 0.965 - - - - 0.965 - Mlig455_030245 {REF} {Length: 1621} {RNA1509_6872} {RNA1310_19869.1} {RNA815_8634}
12. MligTC455_27803 96 1.99 Mlig455_000283

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_000283 {REF} {Length: 3407} {RNA1509_13206} {RNA1310_1311.1} {RNA815_19414}
13. MligTC455_42486 52 1.09 Mlig455_056354

Neo: -

Age: -

 0.961 - - - - 0.961 - Mlig455_056354 {REF} {Length: 1240}
14. MligTC455_14308 56 1.17 Mlig455_058785

Neo: -

Age: -

 CNBD2 0.96 - - 0.960 - - - Mlig455_058785 {REF} {Length: 2153} {Pfam: Cyclic nucleotide-binding domain [PF00027.31, score=56.0]} {Human: ENSG00000149646, CNBD2, cyclic nucleotide binding domain containing 2, [Score=69.7, Expect=7e-12]} {Mouse: ENSMUSG00000038085, Cnbd2, cyclic nucleotide binding domain containing 2, [Score=71.2, Expect=9e-13]} {Dmel: FBgn0085421, Epac, Exchange protein directly activated by cAMP, [Score=54.7, Expect=2e-07]} {RNA1310_32252} {RNA815_58357}
15. MligTC455_30277 912 19.01 Mlig455_071018

Neo: -

Age: Down-Up-Down

 API5 0.96 - - - - 0.960 - Mlig455_071018 {REF} {Length: 5982} {Pfam: Apoptosis inhibitory protein 5 (API5) [PF05918.13, score=122.0]} {Human: ENSG00000166181, API5, apoptosis inhibitor 5, [Score=150, Expect=2e-40]} {Mouse: ENSMUSG00000027193, Api5, apoptosis inhibitor 5, [Score=149, Expect=4e-40]} {Dmel: FBgn0027885, Aac11, [Score=103, Expect=8e-24]} {Smed: dd_Smed_v6_2384_0_1, dd_Smed_v6_2384_0_1, [Score=58.2, Expect=3e-09]} {RNA1509_5039} {RNA1310_554.1} {RNA815_1342.1}
16. MligTC455_50510 9657 201.19 Mlig455_010517, Mlig455_061819, Mlig455_061855, Mlig455_061863

Neo: -

Age: Down-Up-Down

Regeneration-downregulated BL: -1.759

Regeneration-depleted BL: -1.759

 PPP1R3B 0.959 - - - - 0.959 -

Mlig455_010517 {REF} {Length: 1875} {Pfam: Carbohydrate/starch-binding module (family 21) [PF03370.15, score=63.8]; Starch/carbohydrate-binding module (family 53) [PF16760.7, score=27.0]} {Human: ENSG00000173281, PPP1R3B, protein phosphatase 1 regulatory subunit 3B, [Score=57.4, Expect=6e-09]; ENSG00000285343, PPP1R3B, protein phosphatase 1 regulatory subunit 3B, [Score=57.4, Expect=6e-09]} {Mouse: ENSMUSG00000072494, Ppp1r3e, protein phosphatase 1, regulatory subunit 3E, [Score=64.7, Expect=1e-11]} {Celegans: WBGene00019211, H18N23.2, Protein phosphatase 1 regulatory subunit, [Score=72.8, Expect=2e-14]} {Smed: dd_Smed_v6_1526_0_1, dd_Smed_v6_1526_0_1, [Score=58.9, Expect=6e-10]} {RNA1509_2365} {RNA1310_15793} {RNA815_6339.1}

Mlig455_061819 {REF} {Length: 1875} {Pfam: Carbohydrate/starch-binding module (family 21) [PF03370.15, score=64.0]; Starch/carbohydrate-binding module (family 53) [PF16760.7, score=27.0]} {Human: ENSG00000173281, PPP1R3B, protein phosphatase 1 regulatory subunit 3B, [Score=55.5, Expect=2e-08]; ENSG00000285343, PPP1R3B, protein phosphatase 1 regulatory subunit 3B, [Score=55.5, Expect=2e-08]} {Mouse: ENSMUSG00000072494, Ppp1r3e, protein phosphatase 1, regulatory subunit 3E, [Score=64.3, Expect=1e-11]} {Celegans: WBGene00019211, H18N23.2, Protein phosphatase 1 regulatory subunit, [Score=70.1, Expect=1e-13]} {Smed: dd_Smed_v6_1526_0_1, dd_Smed_v6_1526_0_1, [Score=57.8, Expect=1e-09]} {RNA1509_20831, RNA1509_21113, RNA1509_2365, RNA1509_51404} {RNA1310_15793, RNA1509_20831, RNA1509_21113, RNA1509_2365, RNA1509_51404} {RNA1509_20831, RNA1509_21113, RNA1509_2365, RNA1509_51404, RNA815_6339.1}

Mlig455_061855 {REF} {Length: 1862} {Pfam: Carbohydrate/starch-binding module (family 21) [PF03370.15, score=64.0]; Starch/carbohydrate-binding module (family 53) [PF16760.7, score=27.0]} {Human: ENSG00000173281, PPP1R3B, protein phosphatase 1 regulatory subunit 3B, [Score=55.5, Expect=2e-08]; ENSG00000285343, PPP1R3B, protein phosphatase 1 regulatory subunit 3B, [Score=55.5, Expect=2e-08]} {Mouse: ENSMUSG00000072494, Ppp1r3e, protein phosphatase 1, regulatory subunit 3E, [Score=64.3, Expect=1e-11]} {Celegans: WBGene00019211, H18N23.2, Protein phosphatase 1 regulatory subunit, [Score=70.1, Expect=1e-13]} {Smed: dd_Smed_v6_1526_0_1, dd_Smed_v6_1526_0_1, [Score=57.8, Expect=1e-09]} {RNA1509_2365, RNA1509_39538, RNA1509_59849} {RNA1310_15793, RNA1509_39538, RNA1509_59849} {RNA1509_39538, RNA1509_59849, RNA815_6339.1}

Mlig455_061863 {REF} {Length: 1748} {Pfam: Carbohydrate/starch-binding module (family 21) [PF03370.15, score=58.7]; Starch/carbohydrate-binding module (family 53) [PF16760.7, score=27.1]} {Human: ENSG00000285343, PPP1R3B, protein phosphatase 1 regulatory subunit 3B, [Score=51.6, Expect=4e-07]; ENSG00000173281, PPP1R3B, protein phosphatase 1 regulatory subunit 3B, [Score=51.6, Expect=4e-07]} {Mouse: ENSMUSG00000072494, Ppp1r3e, protein phosphatase 1, regulatory subunit 3E, [Score=64.7, Expect=9e-12]} {Celegans: WBGene00019211, H18N23.2, Protein phosphatase 1 regulatory subunit, [Score=60.8, Expect=1e-10]} {Smed: dd_Smed_v6_1526_0_1, dd_Smed_v6_1526_0_1, [Score=54.3, Expect=1e-08]} {RNA1509_2365} {RNA1310_15793} {RNA815_6339.1}
17. MligTC455_19441 305 6.35 Mlig455_001985

Neo: -

Age: logFC(26M/2M)=-0.555

Region-enriched R2: 2.029/0.00606

 0.957 - - - - 0.957 - Mlig455_001985 {REF} {Length: 2497} {RNA1509_40470} {RNA1310_22476.3, RNA1509_40470} {RNA1509_40470, RNA815_16128}
18. MligTC455_46101 10 0.2 Mlig455_011282

Neo: -

Age: -

 0.957 - - - - - 0.957 Mlig455_011282 {REF} {Length: 2523} {NoTransDecoderORF} {RNA1509_48039} {RNA1310_88733} {RNA815_22354}
19. MligTC455_36869 69 1.45 Mlig455_037726

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_037726 {REF} {Length: 3927} {NoTransDecoderORF} {RNA1509_32637} {RNA1310_10807.1, RNA1509_32637} {RNA1509_32637, RNA815_15623}
20. MligTC455_26956 524 10.91 Mlig455_007984

Neo: -

Age: Down-Up-Up

 0.954 - - - - 0.954 - Mlig455_007984 {REF} {Length: 1388} {RNA1509_52323} {RNA1310_12387.2} {RNA815_14587}
21. MligTC455_29983 94 1.95 Mlig455_037901

Neo: -

Age: Down-Up-Down

 0.954 - - - - 0.954 - Mlig455_037901 {REF} {Length: 2356} {Pfam: Mab-21 protein [PF03281.16, score=27.2]} {RNA1509_59266} {RNA1310_36780} {RNA815_5358.1}
22. MligTC455_21597 35 0.72 Mlig455_019890

Neo: Germline

Age: -

 0.953 - - - - 0.953 - Mlig455_019890 {REF} {Length: 744} {NoTransDecoderORF} {RNA1310_5686} {RNA815_28184}
23. MligTC455_38597 42 0.87 Mlig455_025025

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_025025 {REF} {Length: 836} {NoTransDecoderORF} {RNA1509_21228} {RNA1310_9218} {RNA815_7856.3}
24. MligTC455_40233 550 11.46 Mlig455_010288, Mlig455_010326

Neo: -

Age: -

Region-enriched R8: 2.427/0.01141

 UNC5A 0.953 - - - - 0.953 -

Mlig455_010288 {REF} {Length: 5227} {Pfam: ZU5 domain [PF00791.22, score=95.5]; UPA domain [PF17217.5, score=68.9]; Death domain [PF00531.24, score=52.5]; Immunoglobulin domain [PF13927.8, score=23.3]; Immunoglobulin domain [PF00047.27, score=19.7]} {Human: ENSG00000113763, UNC5A, unc-5 netrin receptor A, [RH, Score=213, Expect=1e-56]} {Mouse: ENSMUSG00000025876, Unc5a, unc-5 netrin receptor A, [RH, Score=211, Expect=3e-56]} {Dmel: FBgn0034013, unc-5, [Score=95.9, Expect=1e-19]} {Celegans: WBGene00006745, unc-5, Netrin receptor unc-5, [Score=174, Expect=2e-44]} {Smed: dd_Smed_v6_10730_0_1, dd_Smed_v6_10730_0_1, [Score=306, Expect=1e-88]} {RNA1509_46036} {RNA1310_39257} {RNA815_1054.1}

Mlig455_010326 {REF} {Length: 5544} {Pfam: ZU5 domain [PF00791.22, score=96.1]; UPA domain [PF17217.5, score=70.1]; Death domain [PF00531.24, score=52.9]} {Human: ENSG00000113763, UNC5A, unc-5 netrin receptor A, [RH, Score=214, Expect=2e-58]} {Mouse: ENSMUSG00000025876, Unc5a, unc-5 netrin receptor A, [RH, Score=211, Expect=1e-57]} {Dmel: FBgn0034013, unc-5, [Score=93.6, Expect=3e-19]} {Celegans: WBGene00006745, unc-5, Netrin receptor unc-5, [RH, Score=133, Expect=4e-32]} {Smed: dd_Smed_v6_10730_0_1, dd_Smed_v6_10730_0_1, [Score=278, Expect=3e-81]} {RNA1509_46036} {RNA1310_8280.2} {RNA815_1054.1}
25. MligTC455_11497 60 1.24 Mlig455_038567

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_038567 {REF} {Length: 443} {NoTransDecoderORF} {RNA1509_51837} {RNA1310_23145} {RNA815_41033.2}
26. MligTC455_30269 148 3.09 Mlig455_050984

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_050984 {REF} {Length: 3262} {Dmel: FBgn0036278, CrzR, Corazonin receptor, [Score=55.5, Expect=1e-09]} {RNA1509_5039} {RNA1310_3442.1} {RNA815_3500.1}
27. MligTC455_12645 62 1.3 Mlig455_021679

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_021679 {REF} {Length: 829} {NoTransDecoderORF} {RNA1509_32554} {RNA1310_11719}
28. MligTC455_41308 97 2.02 Mlig455_020613

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_020613 {REF} {Length: 1386} {Pfam: BTB/POZ domain [PF00651.33, score=40.1]; BTB And C-terminal Kelch [PF07707.17, score=24.2]} {RNA1310_49711} {RNA815_50748}
29. MligTC455_36061 33 0.69 Mlig455_007140

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.616

 0.95 - - - - 0.950 - Mlig455_007140 {REF} {Length: 7333} {Smed: dd_Smed_v6_26523_0_1, dd_Smed_v6_26523_0_1, [Score=39.3, Expect=1e-05]} {RNA1509_21038} {RNA1310_17276.1} {RNA815_20842.1}
30. MligTC455_40419 6115 127.39 Mlig455_055666

Neo: -

Age: Down-Down-Up

Region-enriched R4: 1.043/0.00005

Regeneration-depleted R4: -1.023
Regeneration-depleted R6: -1.010

 PIH1D1 0.95 - - - - 0.950 - Mlig455_055666 {REF} {Length: 3753} {Pfam: PIH1 N-terminal domain [PF08190.14, score=96.7]; PIH1 CS-like domain [PF18201.3, score=47.8]} {Human: ENSG00000104872, PIH1D1, PIH1 domain containing 1, [RH, Score=136, Expect=2e-36]} {Mouse: ENSMUSG00000003423, Pih1d1, PIH1 domain containing 1, [RH, Score=147, Expect=1e-40]} {Dmel: FBgn0032455, Pih1D1, [RH, Score=116, Expect=7e-29]} {Smed: dd_Smed_v6_7684_0_1, dd_Smed_v6_7684_0_1, [RH, Score=189, Expect=2e-56]} {RNA1509_28944, RNA1509_57670} {RNA1310_29390.1, RNA1509_57670} {RNA1509_57670, RNA815_11271.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA