M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_44538

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_44538 162 3.37 Mlig455_042460

Neo: -

Age: Down-Up-Down

Region-enriched R5: 2.820/0.00714

 PRDM10 Mlig455_042460 {REF} {Length: 3805} {TRANSSPLICED} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=53.8]; C2H2-type zinc finger [PF13894.8, score=53.2]; C2H2 type zinc-finger (2 copies) [PF12756.9, score=24.5]; Zinc-finger of C2H2 type [PF12874.9, score=21.5]} {Human: ENSG00000170325, PRDM10, PR/SET domain 10, [RH, Score=151, Expect=8e-37]} {Mouse: ENSMUSG00000042496, Prdm10, PR domain containing 10, [RH, Score=150, Expect=2e-36]} {Dmel: FBgn0030314, CG11696, [Score=55.8, Expect=2e-07]} {RNA1509_23473} {RNA1310_4659} {RNA815_26860}

Cumulative graph for MligTC455_44538

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.4 2.65 0.99963 1.00000
RegionR2 1.77 2.65 0.16958 0.51495
RegionR3 1.02 2.65 0.35864 0.89387
RegionR4 1.147 2.65 0.32769 0.64572
RegionR5 2.82 2.65 0.00064 0.00714
RegionR6 2.297 2.65 0.01902 0.24720
RegionR7 1.529 2.65 0.22445 0.84576
RegionR8 -5.183 2.65 0.99984 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.032 2.65 0.99987 1.00000
RegenerationR2 -0.044 2.65 0.95076 1.00000
RegenerationR3 0.279 2.65 0.73580 0.95927
RegenerationR4 -0.159 2.65 0.83695 0.99968
RegenerationR5 -1.02 2.65 0.12202 0.52290
RegenerationR6 -1.905 2.65 0.02411 0.19318
RegenerationBL 2.036 2.65 0.16490 0.48724
RegenerationTP 1.493 2.65 0.50062 0.90104


Genes with expression patterns similar to MligTC455_44538

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_44538 162 3.37 Mlig455_042460

Neo: -

Age: Down-Up-Down

Region-enriched R5: 2.820/0.00714

 PRDM10 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_042460 {REF} {Length: 3805} {TRANSSPLICED} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=53.8]; C2H2-type zinc finger [PF13894.8, score=53.2]; C2H2 type zinc-finger (2 copies) [PF12756.9, score=24.5]; Zinc-finger of C2H2 type [PF12874.9, score=21.5]} {Human: ENSG00000170325, PRDM10, PR/SET domain 10, [RH, Score=151, Expect=8e-37]} {Mouse: ENSMUSG00000042496, Prdm10, PR domain containing 10, [RH, Score=150, Expect=2e-36]} {Dmel: FBgn0030314, CG11696, [Score=55.8, Expect=2e-07]} {RNA1509_23473} {RNA1310_4659} {RNA815_26860}
2. MligTC455_40077 179 3.73 Mlig455_014990

Neo: -

Age: -

Region-enriched R5: 1.964/0.04664

 1.834 - 0.878 - - - 0.956 Mlig455_014990 {REF} {Length: 3906} {TRANSSPLICED} {RNA1509_41002, RNA1509_58907} {RNA1310_13341, RNA1509_41002, RNA1509_58907} {RNA1509_41002, RNA1509_58907, RNA815_774.1}
3. MligTC455_48374 286 5.96 Mlig455_054014

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.402

Region-enriched R4: 2.391/0.00834
Region-enriched R5: 1.705/0.02774

 CCDC25 1.736 - - - - 0.959 0.777 Mlig455_054014 {REF} {Length: 851} {TRANSSPLICED} {Pfam: NFACT protein RNA binding domain [PF05670.15, score=124.7]; Secretory protein of YscJ/FliF family [PF01514.19, score=21.1]; Caldesmon [PF02029.17, score=18.4]} {Human: ENSG00000147419, CCDC25, coiled-coil domain containing 25, [RH, Score=213, Expect=4e-70]} {Mouse: ENSMUSG00000022035, Ccdc25, coiled-coil domain containing 25, [RH, Score=216, Expect=2e-71]} {Dmel: FBgn0029929, CG4593, [RH, Score=228, Expect=2e-76]} {Celegans: WBGene00013213, Y54G11A.2, [Score=209, Expect=6e-69]} {Smed: dd_Smed_v6_4506_0_1, dd_Smed_v6_4506_0_1, [RH, Score=243, Expect=2e-82]} {RNA1509_7308} {RNA1310_42614, RNA1509_7308} {RNA1509_7308, RNA815_21229}
4. MligTC455_34971 458 9.55 Mlig455_025024

Neo: -

Age: Up-Down-Up

Region-enriched R2: 1.994/0.04087
Region-enriched R5: 1.574/0.00381

 1.735 - - 0.770 - - 0.965 Mlig455_025024 {REF} {Length: 1861} {TRANSSPLICED} {RNA1509_42153} {RNA1310_15720.1, RNA1509_42153} {RNA1509_42153, RNA815_7713}
5. MligTC455_48372 203 4.24 Mlig455_050055

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=3.610

Region-enriched R4: 3.425/0.00863
Region-enriched R5: 2.608/0.01110

 CCDC25 1.706 - - - - 0.951 0.755 Mlig455_050055 {REF} {Length: 843} {TRANSSPLICED} {Pfam: NFACT protein RNA binding domain [PF05670.15, score=124.7]; Secretory protein of YscJ/FliF family [PF01514.19, score=21.1]; Caldesmon [PF02029.17, score=18.6]} {Human: ENSG00000147419, CCDC25, coiled-coil domain containing 25, [RH, Score=213, Expect=3e-70]} {Mouse: ENSMUSG00000022035, Ccdc25, coiled-coil domain containing 25, [RH, Score=216, Expect=2e-71]} {Dmel: FBgn0029929, CG4593, [RH, Score=228, Expect=1e-76]} {Celegans: WBGene00013213, Y54G11A.2, [RH, Score=209, Expect=3e-69]} {Smed: dd_Smed_v6_4506_0_1, dd_Smed_v6_4506_0_1, [RH, Score=243, Expect=1e-82]} {RNA1509_19692} {RNA1310_42614, RNA1509_19692} {RNA1509_19692, RNA815_21229}
6. MligTC455_35295 29 0.6 Mlig455_036795, Mlig455_036802

Neo: -

Age: Down-Up-Down

 0.966 - - - - 0.966 -

Mlig455_036795 {REF} {Length: 993} {Pfam: Ion transport protein [PF00520.33, score=21.8]} {RNA1310_132837}

Mlig455_036802 {REF} {Length: 2801} {Pfam: Ion transport protein [PF00520.33, score=20.3]} {RNA1310_30337} {RNA815_25564}
7. MligTC455_50817 765 15.95 Mlig455_031796

Neo: -

Age: -

Region-enriched R5: 1.125/0.00308

 TECPR2 0.961 0.961 - - - - - Mlig455_031796 {REF} {Length: 5189} {TRANSSPLICED} {Pfam: Tectonin domain [PF19193.2, score=41.3]} {Human: ENSG00000196663, TECPR2, tectonin beta-propeller repeat containing 2, [RH, Score=94.7, Expect=1e-18]} {Mouse: ENSMUSG00000025272, Tro, trophinin, [Score=108, Expect=4e-23]} {Celegans: WBGene00012369, W09G3.6, [Score=50.8, Expect=9e-06]} {RNA1509_56283, RNA1509_58407} {RNA1310_1451, RNA1509_56283} {RNA1509_56283, RNA815_3075}
8. MligTC455_23398 70 1.47 Mlig455_058118

Neo: -

Age: Up-Down-Up

Region-enriched R4: 5.079/0.00128

 NGLY1 0.959 - - - - - 0.959 Mlig455_058118 {REF} {Length: 4244} {Pfam: PNGase C-terminal domain, mannose-binding module PAW [PF04721.19, score=209.5]; PUB domain [PF09409.12, score=60.6]; Thioredoxin [PF00085.22, score=45.0]; Rad4 transglutaminase-like domain [PF03835.17, score=30.0]} {Human: ENSG00000151092, NGLY1, N-glycanase 1, [Score=330, Expect=2e-100]} {Mouse: ENSMUSG00000021785, Ngly1, N-glycanase 1, [Score=347, Expect=6e-107]} {Dmel: FBgn0033050, Pngl, PNGase-like, [Score=244, Expect=1e-69]} {Celegans: WBGene00010160, png-1, Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase, [Score=196, Expect=6e-53]} {Smed: dd_Smed_v6_5705_0_1, dd_Smed_v6_5705_0_1, [Score=244, Expect=1e-68]} {RNA1509_9974} {RNA1310_3958} {RNA815_834.1}
9. MligTC455_19107 490 10.21 Mlig455_002175, Mlig455_002276

Neo: Germline

Age: Up-Down-Up

Region-enriched R5: 1.406/0.00276

 PSMC3IP 0.957 - - - - - 0.957

Mlig455_002175 {REF} {Length: 1599} {TRANSSPLICED} {Pfam: TBPIP/Hop2 winged helix domain [PF07106.15, score=92.4]; Leucine zipper with capping helix domain [PF18517.3, score=39.8]} {Human: ENSG00000131470, PSMC3IP, PSMC3 interacting protein, [RH, Score=128, Expect=2e-36]} {Mouse: ENSMUSG00000019303, Psmc3ip, proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein, [RH, Score=147, Expect=7e-44]} {Smed: dd_Smed_v6_15163_0_1, dd_Smed_v6_15163_0_1, [RH, Score=134, Expect=4e-39]} {RNA1509_36312} {RNA1310_45817.2} {RNA815_29085.1}

Mlig455_002276 {REF} {Length: 1717} {TRANSSPLICED} {Pfam: TBPIP/Hop2 winged helix domain [PF07106.15, score=92.3]; Leucine zipper with capping helix domain [PF18517.3, score=39.8]; Filament-like plant protein, long coiled-coil [PF05911.13, score=21.4]; Penicillinase repressor [PF03965.18, score=19.7]} {Human: ENSG00000131470, PSMC3IP, PSMC3 interacting protein, [RH, Score=130, Expect=3e-37]} {Mouse: ENSMUSG00000019303, Psmc3ip, proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein, [RH, Score=146, Expect=2e-43]} {Smed: dd_Smed_v6_15163_0_1, dd_Smed_v6_15163_0_1, [RH, Score=139, Expect=3e-41]} {RNA1509_18951} {RNA1310_38683} {RNA815_16821}
10. MligTC455_21785 107 2.24 Mlig455_005064

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=-0.389

 KRIT1 0.956 - - - - - 0.956 Mlig455_005064 {REF} {Length: 4037} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=53.0]; Ankyrin repeats (many copies) [PF13857.8, score=50.3]; Ankyrin repeats (many copies) [PF13637.8, score=40.3]; Ankyrin repeat [PF00023.32, score=35.8]; Ankyrin repeat [PF13606.8, score=32.7]; FERM central domain [PF00373.20, score=26.3]} {Human: ENSG00000001631, KRIT1, KRIT1, ankyrin repeat containing, [RH, Score=218, Expect=2e-60]; ENSG00000285953, AC000120.3, novel protein, [RH, Score=209, Expect=2e-57]} {Mouse: ENSMUSG00000000600, Krit1, KRIT1, ankyrin repeat containing, [RH, Score=207, Expect=1e-56]} {Dmel: FBgn0029137, Patsas, [Score=51.6, Expect=2e-06]} {Celegans: WBGene00013955, kri-1, KRIT 1 (Krev interaction trapped/cerebral cavernous malformation 1) homolog; Krev interaction trapped/cerebral cavernous malformation 1 isoform a, [RH, Score=85.9, Expect=5e-17]} {Smed: dd_Smed_v6_10935_0_1, dd_Smed_v6_10935_0_1, [RH, Score=137, Expect=3e-33]} {RNA1509_17918} {RNA1310_6799, RNA1509_17918} {RNA1509_17918, RNA815_1724}
11. MligTC455_32517 153 3.19 Mlig455_064987

Neo: -

Age: Up-Down-Up

 OTUD7B 0.955 - - - - - 0.955 Mlig455_064987 {REF} {Length: 3738} {TRANSSPLICED} {Pfam: OTU-like cysteine protease [PF02338.21, score=67.6]; A20-like zinc finger [PF01754.18, score=22.3]} {Human: ENSG00000264522, OTUD7B, OTU deubiquitinase 7B, [RH, Score=251, Expect=6e-72]} {Mouse: ENSMUSG00000038495, Otud7b, OTU domain containing 7B, [RH, Score=251, Expect=5e-72]; ENSMUSG00000033510, Otud7a, OTU domain containing 7A, [RH, Score=247, Expect=1e-71]} {Dmel: FBgn0037734, trbd, trabid, [Score=125, Expect=3e-29]} {Celegans: WBGene00021733, otub-2, OTUBain deubiquitylating protease homolog, [RH, Score=238, Expect=4e-69]} {Smed: dd_Smed_v6_10637_0_1, dd_Smed_v6_10637_0_1, [Score=246, Expect=3e-73]} {RNA1509_13944} {RNA1310_14040.1} {RNA815_8064}
12. MligTC455_51579 550 11.47 Mlig455_042559

Neo: Int S/G2/M

Age: Down-Up-Up, logFC(26M/2M)=0.292

 DIS3L 0.955 - - - - - 0.955 Mlig455_042559 {REF} {Length: 3524} {TRANSSPLICED} {Pfam: RNB domain [PF00773.21, score=268.4]; Dis3-like cold-shock domain 2 (CSD2) [PF17849.3, score=74.6]; Rrp44-like cold shock domain [PF17216.5, score=28.1]; Cold shock domain [PF17876.3, score=23.3]; S1 domain [PF17215.5, score=19.3]} {Human: ENSG00000166938, DIS3L, DIS3 like exosome 3'-5' exoribonuclease, [RH, Score=869, Expect=0.0]} {Mouse: ENSMUSG00000032396, Dis3l, DIS3 like exosome 3'-5' exoribonuclease, [RH, Score=872, Expect=0.0]} {Dmel: FBgn0039183, Dis3, [RH, Score=509, Expect=2e-163]} {Celegans: WBGene00001001, dis-3, Probable exosome complex exonuclease RRP44, [RH, Score=451, Expect=8e-142]} {Smed: dd_Smed_v6_6527_0_1, dd_Smed_v6_6527_0_1, [RH, Score=914, Expect=0.0]} {RNA1509_5285} {RNA1310_3365, RNA1509_5285} {RNA1509_5285, RNA815_3022}
13. MligTC455_24421 426 8.87 Mlig455_043678

Neo: -

Age: -

 0.954 - - - - - 0.954 Mlig455_043678 {REF} {Length: 1868} {TRANSSPLICED} {Pfam: MYND finger [PF01753.20, score=39.6]} {Smed: dd_Smed_v6_9973_0_1, dd_Smed_v6_9973_0_1, [Score=47.8, Expect=2e-06]} {RNA1509_25048} {RNA1310_37030, RNA1509_25048} {RNA1509_25048, RNA815_28058}
14. MligTC455_21555 70 1.46 Mlig455_014351

Neo: -

Age: -

 0.953 - - - 0.953 - - Mlig455_014351 {REF} {Length: 4507} {Pfam: Transposase (partial DDE domain) [PF01359.20, score=69.9]} {RNA1509_41009} {RNA1310_68932} {RNA815_36459}
15. MligTC455_09479 51 1.07 Mlig455_008810

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_008810 {REF} {Length: 1380} {RNA1509_53279} {RNA1310_34746} {RNA815_43491}
16. MligTC455_20500 71 1.48 Mlig455_014346

Neo: -

Age: -

 0.952 - - - 0.952 - - Mlig455_014346 {REF} {Length: 1387} {Smed: dd_Smed_v6_12949_0_1, dd_Smed_v6_12949_0_1, [Score=65.1, Expect=9e-13]} {RNA1310_28028} {RNA815_58815}
17. MligTC455_49159 267 5.57 Mlig455_062353, Mlig455_062366

Neo: -

Age: -

Region-enriched R4: 3.582/0.01652

 0.952 - - - - 0.952 -

Mlig455_062353 {REF} {Length: 739} {RNA1509_34245} {RNA1310_30049} {RNA815_18326}

Mlig455_062366 {REF} {Length: 807} {RNA1509_34245} {RNA1310_30049} {RNA815_18326}
18. MligTC455_40221 839 17.48 Mlig455_030497

Neo: -

Age: -

Region-enriched R5: 1.083/0.01281

 RABL6 0.951 0.951 - - - - - Mlig455_030497 {REF} {Length: 2513} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=48.1]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=26.1]} {Human: ENSG00000196642, RABL6, RAB, member RAS oncogene family like 6, [Score=189, Expect=7e-53]} {Mouse: ENSMUSG00000015087, Rabl6, RAB, member RAS oncogene family-like 6, [Score=172, Expect=3e-45]} {Dmel: FBgn0015790, Rab11, [Score=56.6, Expect=8e-09]} {Celegans: WBGene00008585, F08G12.1, [Score=166, Expect=7e-44]} {Smed: dd_Smed_v6_6925_0_3, dd_Smed_v6_6925_0_3, [Score=201, Expect=2e-59]} {RNA1509_14391} {RNA1310_3744.1, RNA1509_14391} {RNA1509_14391, RNA815_23301}
19. MligTC455_24236 167 3.48 Mlig455_029060

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.394

 TNK2 0.95 - - - 0.950 - - Mlig455_029060 {REF} {Length: 4828} {TRANSSPLICED} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=100.5]; Protein kinase domain [PF00069.27, score=35.9]; GTPase binding [PF09027.12, score=21.2]} {Human: ENSG00000061938, TNK2, tyrosine kinase non receptor 2, [Score=100, Expect=2e-21]; ENSG00000007264, MATK, megakaryocyte-associated tyrosine kinase, [Score=99.0, Expect=5e-21]} {Mouse: ENSMUSG00000022791, Tnk2, tyrosine kinase, non-receptor, 2, [Score=100, Expect=5e-21]; ENSMUSG00000004933, Matk, megakaryocyte-associated tyrosine kinase, [Score=98.2, Expect=5e-21]} {Dmel: FBgn0263998, Ack-like, Activated Cdc42 kinase-like, [Score=136, Expect=3e-32]} {Celegans: WBGene00000186, ark-1, Ack-related non-receptor tyrosine kinase, [Score=112, Expect=5e-25]} {Smed: dd_Smed_v6_10115_0_1, dd_Smed_v6_10115_0_1, [Score=151, Expect=3e-37]} {RNA1509_39176, RNA1509_58109} {RNA1310_5146, RNA1509_39176, RNA1509_58109} {RNA1509_39176, RNA1509_58109, RNA815_20800}
20. MligTC455_42435 374 7.8 Mlig455_018657

Neo: -

Age: -

Region-enriched R5: 1.405/0.02263

 VPS51 0.95 - - - - - 0.950 Mlig455_018657 {REF} {Length: 2993} {TRANSSPLICED} {Pfam: Vps51/Vps67 [PF08700.13, score=91.6]; Exocyst complex component Sec5 [PF15469.8, score=79.7]; Dor1-like family [PF04124.14, score=46.6]; COG (conserved oligomeric Golgi) complex component, COG2 [PF06148.13, score=41.3]; Golgi transport complex subunit 5 [PF10392.11, score=34.8]; Vacuolar-sorting protein 54, of GARP complex [PF10475.11, score=28.1]; Vps53-like, N-terminal [PF04100.14, score=20.9]} {Human: ENSG00000149823, VPS51, VPS51, GARP complex subunit, [RH, Score=555, Expect=0.0]} {Mouse: ENSMUSG00000024797, Vps51, VPS51 GARP complex subunit, [RH, Score=544, Expect=0.0]; ENSMUSG00000024799, Tm7sf2, transmembrane 7 superfamily member 2, [RH, Score=544, Expect=0.0]} {Dmel: FBgn0034380, Vps51, Vacuolar protein sorting 51, [RH, Score=488, Expect=2e-162]} {Celegans: WBGene00015176, vps-51, Vacuolar protein sorting-associated protein 51 homolog, [RH, Score=253, Expect=9e-74]} {Smed: dd_Smed_v6_8916_0_2, dd_Smed_v6_8916_0_2, [RH, Score=477, Expect=2e-157]} {RNA1509_9394} {RNA1310_5753} {RNA815_5831}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA