M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_46732

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_46732 1475 30.74 Mlig455_016558

Neo: -

Age: -

 ARFGAP1 Mlig455_016558 {REF} {Length: 3115} {TRANSSPLICED} {Human: ENSG00000101199, ARFGAP1, ADP ribosylation factor GTPase activating protein 1, [Score=149, Expect=4e-40]} {Mouse: ENSMUSG00000027575, Arfgap1, ADP-ribosylation factor GTPase activating protein 1, [Score=145, Expect=7e-39]} {Dmel: FBgn0020655, ArfGAP1, ADP-ribosylation factor GTPase activating protein 1, [Score=192, Expect=5e-56]} {Celegans: WBGene00010500, K02B12.7, [Score=124, Expect=3e-31]} {RNA1509_3768} {RNA1310_4307.1} {RNA815_7335}

Cumulative graph for MligTC455_46732

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.549 5.21 0.11878 0.70860
RegionR2 -0.092 5.21 0.83647 1.00000
RegionR3 0.115 5.21 0.75568 1.00000
RegionR4 1.03 5.21 0.01853 0.09658
RegionR5 0.73 5.21 0.03342 0.14014
RegionR6 0.158 5.21 0.66998 1.00000
RegionR7 -0.25 5.21 0.57672 1.00000
RegionR8 -0.142 5.21 0.77784 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.071 5.21 0.39728 1.00000
RegenerationR2 -0.095 5.21 0.82475 0.99595
RegenerationR3 -0.195 5.21 0.66690 0.93603
RegenerationR4 -0.536 5.21 0.25071 0.69922
RegenerationR5 -0.345 5.21 0.42255 0.81291
RegenerationR6 0.015 5.21 0.97457 1.00000
RegenerationBL -0.377 5.21 0.41788 0.78657
RegenerationTP 0.103 5.21 0.83279 1.00000


Genes with expression patterns similar to MligTC455_46732

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_46732 1475 30.74 Mlig455_016558

Neo: -

Age: -

 ARFGAP1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_016558 {REF} {Length: 3115} {TRANSSPLICED} {Human: ENSG00000101199, ARFGAP1, ADP ribosylation factor GTPase activating protein 1, [Score=149, Expect=4e-40]} {Mouse: ENSMUSG00000027575, Arfgap1, ADP-ribosylation factor GTPase activating protein 1, [Score=145, Expect=7e-39]} {Dmel: FBgn0020655, ArfGAP1, ADP-ribosylation factor GTPase activating protein 1, [Score=192, Expect=5e-56]} {Celegans: WBGene00010500, K02B12.7, [Score=124, Expect=3e-31]} {RNA1509_3768} {RNA1310_4307.1} {RNA815_7335}
2. MligTC455_33028 1326 27.62 Mlig455_023601

Neo: -

Age: logFC(26M/2M)=1.868

 1.847 - - - 0.956 - 0.891 Mlig455_023601 {REF} {Length: 2181} {RNA1509_40038} {RNA1310_6816.1} {RNA815_2112.1}
3. MligTC455_33030 1399 29.14 Mlig455_068103

Neo: -

Age: logFC(26M/2M)=-0.209

 1.833 - - - 0.957 - 0.876 Mlig455_068103 {REF} {Length: 4508} {RNA1509_19594, RNA1509_40038} {RNA1310_6816.1, RNA1509_19594} {RNA1509_19594, RNA815_2112.1}
4. MligTC455_25838 553 11.52 Mlig455_055480

Neo: -

Age: -

 1.731 - - - 0.764 - 0.967 Mlig455_055480 {REF} {Length: 4001} {TRANSSPLICED} {RNA1509_10387} {RNA1310_6525.2, RNA1509_10387} {RNA1509_10387, RNA815_3756.1}
5. MligTC455_29375 1793 37.35 Mlig455_005038, Mlig455_005079

Neo: -

Age: -

 YTHDF2 1.706 - 0.756 - - - 0.950

Mlig455_005038 {REF} {Length: 3550} {TRANSSPLICED} {Pfam: YT521-B-like domain [PF04146.17, score=132.5]} {Human: ENSG00000198492, YTHDF2, YTH N6-methyladenosine RNA binding protein 2, [RH, Score=248, Expect=2e-75]; ENSG00000149658, YTHDF1, YTH N6-methyladenosine RNA binding protein 1, [RH, Score=240, Expect=2e-72]; ENSG00000185728, YTHDF3, YTH N6-methyladenosine RNA binding protein 3, [RH, Score=237, Expect=2e-71]} {Mouse: ENSMUSG00000040025, Ythdf2, YTH N6-methyladenosine RNA binding protein 2, [RH, Score=248, Expect=3e-75]; ENSMUSG00000038848, Ythdf1, YTH N6-methyladenosine RNA binding protein 1, [RH, Score=245, Expect=2e-74]; ENSMUSG00000047213, Ythdf3, YTH N6-methyladenosine RNA binding protein 3, [RH, Score=238, Expect=4e-71]} {Dmel: FBgn0039261, CG6422, [RH, Score=238, Expect=1e-70]} {Smed: dd_Smed_v6_7891_0_1, dd_Smed_v6_7891_0_1, [RH, Score=229, Expect=3e-69]} {RNA1509_11375, RNA1509_59510} {RNA1310_10049, RNA1509_11375, RNA1509_59510} {RNA1509_11375, RNA1509_59510, RNA815_13801}

Mlig455_005079 {REF} {Length: 4171} {TRANSSPLICED} {Pfam: YT521-B-like domain [PF04146.17, score=132.7]} {Human: ENSG00000198492, YTHDF2, YTH N6-methyladenosine RNA binding protein 2, [RH, Score=248, Expect=5e-75]; ENSG00000149658, YTHDF1, YTH N6-methyladenosine RNA binding protein 1, [RH, Score=240, Expect=2e-72]; ENSG00000185728, YTHDF3, YTH N6-methyladenosine RNA binding protein 3, [RH, Score=237, Expect=3e-71]} {Mouse: ENSMUSG00000040025, Ythdf2, YTH N6-methyladenosine RNA binding protein 2, [RH, Score=248, Expect=3e-75]; ENSMUSG00000038848, Ythdf1, YTH N6-methyladenosine RNA binding protein 1, [RH, Score=245, Expect=3e-74]; ENSMUSG00000047213, Ythdf3, YTH N6-methyladenosine RNA binding protein 3, [RH, Score=237, Expect=4e-71]} {Dmel: FBgn0039261, CG6422, [RH, Score=238, Expect=2e-70]} {Smed: dd_Smed_v6_7891_0_1, dd_Smed_v6_7891_0_1, [RH, Score=229, Expect=3e-69]} {RNA1509_11375, RNA1509_22293, RNA1509_35748, RNA1509_42189, RNA1509_53677} {RNA1310_10049, RNA1509_22293, RNA1509_35748, RNA1509_42189, RNA1509_53677} {RNA1509_22293, RNA1509_35748, RNA1509_42189, RNA1509_53677, RNA815_13801}
6. MligTC455_34142 1955 40.74 Mlig455_058610, Mlig455_058700

Neo: -

Age: -

 FUT6 1.684 - - - 0.722 - 0.962

Mlig455_058610 {REF} {Length: 3664} {TRANSSPLICED} {Pfam: Glycosyltransferase family 10 (fucosyltransferase) C-term [PF00852.21, score=192.6]; Fucosyltransferase, N-terminal [PF17039.7, score=66.1]} {Human: ENSG00000156413, FUT6, fucosyltransferase 6, [RH, Score=158, Expect=2e-43]; ENSG00000130383, FUT5, fucosyltransferase 5, [RH, Score=153, Expect=1e-41]} {Mouse: ENSMUSG00000036587, Fut7, fucosyltransferase 7, [RH, Score=144, Expect=4e-38]; ENSMUSG00000049307, Fut4, fucosyltransferase 4, [RH, Score=140, Expect=2e-36]} {Dmel: FBgn0036485, FucTA, [RH, Score=343, Expect=3e-113]} {Celegans: WBGene00001505, fut-1, Alpha-(1,3)-fucosyltransferase fut-1, [RH, Score=149, Expect=8e-40]} {Smed: dd_Smed_v6_14363_0_1, dd_Smed_v6_14363_0_1, [RH, Score=394, Expect=1e-133]} {RNA1509_27530, RNA1509_37298, RNA1509_9062} {RNA1310_17190.1, RNA1509_27530, RNA1509_37298} {RNA1509_27530, RNA1509_37298, RNA815_6685}

Mlig455_058700 {REF} {Length: 3382} {TRANSSPLICED} {Pfam: Glycosyltransferase family 10 (fucosyltransferase) C-term [PF00852.21, score=192.6]; Fucosyltransferase, N-terminal [PF17039.7, score=66.1]} {Human: ENSG00000156413, FUT6, fucosyltransferase 6, [RH, Score=158, Expect=2e-43]; ENSG00000130383, FUT5, fucosyltransferase 5, [RH, Score=153, Expect=1e-41]} {Mouse: ENSMUSG00000036587, Fut7, fucosyltransferase 7, [RH, Score=144, Expect=4e-38]; ENSMUSG00000049307, Fut4, fucosyltransferase 4, [RH, Score=140, Expect=2e-36]} {Dmel: FBgn0036485, FucTA, [RH, Score=343, Expect=3e-113]} {Celegans: WBGene00001505, fut-1, Alpha-(1,3)-fucosyltransferase fut-1, [RH, Score=149, Expect=8e-40]} {Smed: dd_Smed_v6_14363_0_1, dd_Smed_v6_14363_0_1, [RH, Score=394, Expect=1e-133]} {RNA1509_9062} {RNA1310_17190.1, RNA1509_9062} {RNA1509_9062, RNA815_6685}
7. MligTC455_20247 529 11.02 Mlig455_058977

Neo: -

Age: -

Region-enriched R5: 1.654/0.00639

 NUDT5 1.679 0.718 - - - - 0.961 Mlig455_058977 {REF} {Length: 1303} {TRANSSPLICED} {Pfam: NUDIX domain [PF00293.30, score=55.7]} {Human: ENSG00000165609, NUDT5, nudix hydrolase 5, [RH, Score=107, Expect=1e-28]} {Mouse: ENSMUSG00000025817, Nudt5, nudix (nucleoside diphosphate linked moiety X)-type motif 5, [RH, Score=107, Expect=2e-28]} {Celegans: WBGene00003579, ndx-2, Putative nudix hydrolase 2, [RH, Score=95.1, Expect=5e-24]} {RNA1509_40193, RNA1509_54065} {RNA1310_36192, RNA1509_40193, RNA1509_54065} {RNA1509_40193, RNA1509_54065, RNA815_17837}
8. MligTC455_21293 1877 39.1 Mlig455_011317

Neo: -

Age: -

 1.657 - - 0.703 0.954 - - Mlig455_011317 {REF} {Length: 2068} {TRANSSPLICED} {RNA1509_23516, RNA1509_25439, RNA1509_36011, RNA1509_4488} {RNA1310_27726.1, RNA1509_23516, RNA1509_25439, RNA1509_36011, RNA1509_4488} {RNA1509_23516, RNA1509_25439, RNA1509_36011, RNA1509_4488, RNA815_4709}
9. MligTC455_39133 322 6.7 Mlig455_036429

Neo: -

Age: Down-Up-Up

 COPS6 0.961 - - - - - 0.961 Mlig455_036429 {REF} {Length: 2651} {TRANSSPLICED} {Pfam: Maintenance of mitochondrial structure and function [PF13012.8, score=85.9]; JAB1/Mov34/MPN/PAD-1 ubiquitin protease [PF01398.23, score=43.1]} {Human: ENSG00000168090, COPS6, COP9 signalosome subunit 6, [RH, Score=243, Expect=6e-78]} {Mouse: ENSMUSG00000019494, Cops6, COP9 signalosome subunit 6, [RH, Score=239, Expect=1e-76]} {Dmel: FBgn0028837, CSN6, COP9 signalosome subunit 6, [RH, Score=233, Expect=3e-74]} {Celegans: WBGene00004464, rpn-8, Proteasome Regulatory Particle, Non-ATPase-like, [Score=89.0, Expect=1e-19]} {Smed: dd_Smed_v6_4168_0_1, dd_Smed_v6_4168_0_1, [RH, Score=131, Expect=1e-35]} {RNA1509_12499} {RNA1310_25406.1, RNA1509_12499} {RNA1509_12499, RNA815_12821.1}
10. MligTC455_54027 1166 24.29 Mlig455_044233, Mlig455_044252

Neo: -

Age: -

 ZNF619 0.96 - - - - - 0.960

Mlig455_044233 {REF} {Length: 6297} {TRANSSPLICED} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=38.1]; C2H2-type zinc finger [PF13894.8, score=37.8]; Zinc-finger double domain [PF13465.8, score=31.4]; C2H2-type zinc finger [PF13912.8, score=26.4]} {Human: ENSG00000177873, ZNF619, zinc finger protein 619, [Score=65.5, Expect=2e-10]; ENSG00000196705, ZNF431, zinc finger protein 431, [Score=63.5, Expect=6e-10]; ENSG00000256294, ZNF225, zinc finger protein 225, [Score=63.2, Expect=1e-09]; ENSG00000267680, ZNF224, zinc finger protein 224, [Score=62.8, Expect=1e-09]; ENSG00000186026, ZNF284, zinc finger protein 284, [Score=62.8, Expect=1e-09]} {Mouse: ENSMUSG00000047036, Zfp445, zinc finger protein 445, [Score=68.9, Expect=1e-11]; ENSMUSG00000021510, Zfp729a, zinc finger protein 729a, [Score=67.0, Expect=6e-11]} {Dmel: FBgn0032295, CG12299, [Score=64.3, Expect=2e-10]} {Smed: dd_Smed_v6_17476_0_1, dd_Smed_v6_17476_0_1, [RH, Score=94.0, Expect=9e-20]} {RNA1509_4586} {RNA1310_3695, RNA1509_4586} {RNA1509_4586, RNA815_3623}

Mlig455_044252 {REF} {Length: 6293} {TRANSSPLICED} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=38.1]; C2H2-type zinc finger [PF13894.8, score=37.8]; Zinc-finger double domain [PF13465.8, score=31.4]; C2H2-type zinc finger [PF13912.8, score=26.4]} {Human: ENSG00000177873, ZNF619, zinc finger protein 619, [Score=65.5, Expect=2e-10]; ENSG00000196705, ZNF431, zinc finger protein 431, [Score=63.9, Expect=6e-10]; ENSG00000256294, ZNF225, zinc finger protein 225, [Score=63.2, Expect=1e-09]; ENSG00000186026, ZNF284, zinc finger protein 284, [Score=62.8, Expect=1e-09]} {Mouse: ENSMUSG00000047036, Zfp445, zinc finger protein 445, [Score=68.9, Expect=1e-11]; ENSMUSG00000021510, Zfp729a, zinc finger protein 729a, [Score=67.0, Expect=5e-11]} {Dmel: FBgn0032295, CG12299, [Score=64.3, Expect=2e-10]} {Smed: dd_Smed_v6_17476_0_1, dd_Smed_v6_17476_0_1, [RH, Score=92.4, Expect=2e-19]} {RNA1509_4586} {RNA1310_3695} {RNA815_3623}
11. MligTC455_42110 2111 43.98 Mlig455_003488

Neo: -

Age: -

 PRDX4 0.955 - - - - - 0.955 Mlig455_003488 {REF} {Length: 1973} {Pfam: AhpC/TSA family [PF00578.23, score=125.2]; Redoxin [PF08534.12, score=53.1]; C-terminal domain of 1-Cys peroxiredoxin [PF10417.11, score=51.1]} {Human: ENSG00000123131, PRDX4, peroxiredoxin 4, [Score=323, Expect=2e-112]} {Mouse: ENSMUSG00000025289, Prdx4, peroxiredoxin 4, [Score=324, Expect=4e-113]} {Dmel: FBgn0040308, Jafrac2, Thioredoxin peroxidase 2, [Score=317, Expect=8e-111]} {Celegans: WBGene00006434, prdx-2, PeRoxireDoXin, [Score=266, Expect=1e-91]} {Smed: dd_Smed_v6_3414_0_1, dd_Smed_v6_3414_0_1, [Score=322, Expect=1e-112]} {RNA1509_16873} {RNA1310_13724} {RNA815_4645.1}
12. MligTC455_39323 478 9.96 Mlig455_021384

Neo: -

Age: -

 CRELD1 0.951 - - - - - 0.951 Mlig455_021384 {REF} {Length: 3130} {TRANSSPLICED} {Pfam: Calcium-binding EGF domain [PF07645.17, score=33.7]; Complement Clr-like EGF-like [PF12662.9, score=31.8]; TLR4 regulator and MIR-interacting MSAP [PF11938.10, score=31.6]; Laminin EGF domain [PF00053.26, score=19.6]; Human growth factor-like EGF [PF12661.9, score=19.4]} {Human: ENSG00000163703, CRELD1, cysteine rich with EGF like domains 1, [RH, Score=206, Expect=1e-61]; ENSG00000184164, CRELD2, cysteine rich with EGF like domains 2, [RH, Score=199, Expect=1e-59]} {Mouse: ENSMUSG00000030284, Creld1, cysteine-rich with EGF-like domains 1, [RH, Score=208, Expect=2e-62]} {Dmel: FBgn0031217, CG11377, [RH, Score=162, Expect=2e-45]} {Celegans: WBGene00008624, F09E8.2, [RH, Score=166, Expect=3e-47]} {Smed: dd_Smed_v6_4289_0_1, dd_Smed_v6_4289_0_1, [RH, Score=263, Expect=8e-84]} {RNA1509_39062} {RNA1310_10876.1} {RNA815_12990.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA