Data search
Results for MligTC455_47256
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_47256 | 1264 | 26.33 | Mlig455_035294 | Neo: Int S/G2/M Age: logFC(26M/2M)=0.234 Region-enriched R4: 1.028/0.00756 |
FRG1 | Mlig455_035294 {REF} {Length: 1519} {TRANSSPLICED} {Pfam: FRG1-like domain [PF06229.14, score=186.6]; FAM32A [PF08555.12, score=20.3]} {Human: ENSG00000275145, FRG1, FSHD region gene 1, [RH, Score=208, Expect=2e-66]; ENSG00000283630, FRG1, FSHD region gene 1, [RH, Score=208, Expect=2e-66]; ENSG00000283153, FRG1, FSHD region gene 1, [RH, Score=208, Expect=2e-66]; ENSG00000109536, FRG1, FSHD region gene 1, [RH, Score=208, Expect=2e-66]} {Mouse: ENSMUSG00000031590, Frg1, FSHD region gene 1, [RH, Score=209, Expect=7e-67]} {Dmel: FBgn0036964, FRG1, FSHD region gene 1, [RH, Score=168, Expect=7e-51]} {Celegans: WBGene00014177, frg-1, Protein FRG1 homolog, [RH, Score=129, Expect=8e-36]} {Smed: dd_Smed_v6_3094_0_1, dd_Smed_v6_3094_0_1, [RH, Score=206, Expect=8e-66]} {RNA1509_13353, RNA1509_49322} {RNA1310_22014.1, RNA1509_13353, RNA1509_49322} {RNA1509_13353, RNA1509_49322, RNA815_8956} |
Cumulative graph for MligTC455_47256
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -0.878 | 4.945 | 0.30361 | 0.95281 | |
| RegionR2 | 0.019 | 4.945 | 0.95376 | 1.00000 | |
| RegionR3 | 0.33 | 4.945 | 0.23931 | 0.78060 | |
| RegionR4 | 1.028 | 4.945 | 0.00066 | 0.00756 | |
| RegionR5 | 0.742 | 4.945 | 0.00293 | 0.02318 | |
| RegionR6 | -0.072 | 4.945 | 0.81361 | 1.00000 | |
| RegionR7 | -0.975 | 4.945 | 0.03112 | 0.33601 | |
| RegionR8 | -0.194 | 4.945 | 0.69757 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -1.558 | 4.945 | 0.31775 | 1.00000 | |
| RegenerationR2 | 0.481 | 4.945 | 0.06976 | 0.42993 | |
| RegenerationR3 | -0.004 | 4.945 | 0.98925 | 1.00000 | |
| RegenerationR4 | -0.537 | 4.945 | 0.06802 | 0.41653 | |
| RegenerationR5 | 0.146 | 4.945 | 0.58160 | 0.90107 | |
| RegenerationR6 | 1.011 | 4.945 | 0.00079 | 0.03050 | |
| RegenerationBL | 1.173 | 4.945 | 0.00076 | 0.01904 | |
| RegenerationTP | 0.17 | 4.945 | 0.71225 | 1.00000 |
Genes with expression patterns similar to MligTC455_47256
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_47256 | 1264 | 26.33 | Mlig455_035294 | Neo: Int S/G2/M Age: logFC(26M/2M)=0.234 Region-enriched R4: 1.028/0.00756 |
FRG1 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_035294 {REF} {Length: 1519} {TRANSSPLICED} {Pfam: FRG1-like domain [PF06229.14, score=186.6]; FAM32A [PF08555.12, score=20.3]} {Human: ENSG00000275145, FRG1, FSHD region gene 1, [RH, Score=208, Expect=2e-66]; ENSG00000283630, FRG1, FSHD region gene 1, [RH, Score=208, Expect=2e-66]; ENSG00000283153, FRG1, FSHD region gene 1, [RH, Score=208, Expect=2e-66]; ENSG00000109536, FRG1, FSHD region gene 1, [RH, Score=208, Expect=2e-66]} {Mouse: ENSMUSG00000031590, Frg1, FSHD region gene 1, [RH, Score=209, Expect=7e-67]} {Dmel: FBgn0036964, FRG1, FSHD region gene 1, [RH, Score=168, Expect=7e-51]} {Celegans: WBGene00014177, frg-1, Protein FRG1 homolog, [RH, Score=129, Expect=8e-36]} {Smed: dd_Smed_v6_3094_0_1, dd_Smed_v6_3094_0_1, [RH, Score=206, Expect=8e-66]} {RNA1509_13353, RNA1509_49322} {RNA1310_22014.1, RNA1509_13353, RNA1509_49322} {RNA1509_13353, RNA1509_49322, RNA815_8956} |
| 2. | MligTC455_49480 | 3325 | 69.28 | Mlig455_061462 | Neo: - Age: - Regeneration-upregulated BL: 1.148 Regeneration-enriched BL: 1.148 |
RBM39 | 2.613 | - | - | - | 0.741 | 0.917 | 0.955 | Mlig455_061462 {REF} {Length: 2374} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=136.6]; linker between RRM2 and RRM3 domains in RBM39 protein [PF15519.8, score=60.2]} {Human: ENSG00000131051, RBM39, RNA binding motif protein 39, [RH, Score=363, Expect=1e-118]} {Mouse: ENSMUSG00000027620, Rbm39, RNA binding motif protein 39, [RH, Score=363, Expect=9e-119]} {Dmel: FBgn0031883, Caper, [RH, Score=342, Expect=1e-109]} {Celegans: WBGene00021921, Y55F3AM.3, [RH, Score=258, Expect=6e-78]} {Smed: dd_Smed_v6_1932_0_1, dd_Smed_v6_1932_0_1, [RH, Score=276, Expect=2e-86]} {RNA1509_4239, RNA1509_43417, RNA1509_9704} {RNA1310_3908, RNA1509_4239, RNA1509_43417} {RNA1509_4239, RNA1509_43417, RNA815_1081.1} |
| 3. | MligTC455_38399 | 4980 | 103.75 | Mlig455_048481 | Neo: Int S/G2/M Age: - |
VCP | 1.788 | - | - | - | 0.829 | - | 0.959 | Mlig455_048481 {REF} {Length: 3323} {Pfam: ATPase family associated with various cellular activities (AAA) [PF00004.31, score=323.2]; AAA+ lid domain [PF17862.3, score=83.8]; Cell division protein 48 (CDC48), N-terminal domain [PF02359.20, score=75.5]; Holliday junction DNA helicase RuvB P-loop domain [PF05496.14, score=52.5]; AAA ATPase domain [PF13191.8, score=50.7]; AAA domain (Cdc48 subfamily) [PF07724.16, score=43.2]; AAA domain (dynein-related subfamily) [PF07728.16, score=41.5]; Cell division protein 48 (CDC48), domain 2 [PF02933.19, score=41.0]; AAA domain [PF13671.8, score=40.9]; Vps4 C terminal oligomerisation domain [PF09336.12, score=40.1]; AAA domain [PF13401.8, score=38.3]; TIP49 P-loop domain [PF06068.15, score=35.1]; AAA domain [PF13238.8, score=32.1]; RNA helicase [PF00910.24, score=31.2]; AAA domain [PF13173.8, score=29.7]; Magnesium chelatase, subunit ChlI [PF01078.23, score=29.0]; ABC transporter [PF00005.29, score=27.1]; IstB-like ATP binding protein [PF01695.19, score=27.1]; AAA domain [PF13521.8, score=27.0]; Parvovirus non-structural protein NS1 [PF01057.19, score=26.4]; P-loop containing dynein motor region [PF12775.9, score=26.1]; AAA domain [PF13207.8, score=25.5]; Bacterial dnaA protein [PF00308.20, score=24.8]; ATPase domain predominantly from Archaea [PF01637.20, score=24.3]; AAA domain [PF13481.8, score=23.5]; Threonylcarbamoyl adenosine biosynthesis protein TsaE [PF02367.19, score=23.1]; KaiC [PF06745.15, score=23.0]; AAA domain [PF13479.8, score=22.8]; Viral (Superfamily 1) RNA helicase [PF01443.20, score=22.2]; Sigma-54 interaction domain [PF00158.28, score=22.1]; NACHT domain [PF05729.14, score=21.1]; Zeta toxin [PF06414.14, score=21.1]; Protein of unknown function (DUF815) [PF05673.15, score=20.4]; Type III restriction enzyme, res subunit [PF04851.17, score=20.2]; NB-ARC domain [PF00931.24, score=20.0]; Sigma-54 interaction domain [PF14532.8, score=19.1]; ATPase family associated with various cellular activities (AAA) [PF07726.13, score=19.0]; Uncharacterized conserved protein (DUF2075) [PF09848.11, score=18.5]} {Human: ENSG00000165280, VCP, valosin containing protein, [RH, Score=1269, Expect=0.0]} {Mouse: ENSMUSG00000028452, Vcp, valosin containing protein, [RH, Score=1269, Expect=0.0]} {Dmel: FBgn0261014, TER94, [RH, Score=1271, Expect=0.0]} {Celegans: WBGene00008053, cdc-48.2, Transitional endoplasmic reticulum ATPase homolog 2, [RH, Score=1209, Expect=0.0]} {Smed: dd_Smed_v6_482_0_1, dd_Smed_v6_482_0_1, [RH, Score=1309, Expect=0.0]} {RNA1509_11640, RNA1509_13887, RNA1509_41889, RNA1509_514, RNA1509_8519} {RNA1310_4584, RNA1509_11640, RNA1509_13887, RNA1509_41889, RNA1509_514, RNA1509_8519} {RNA1509_11640, RNA1509_13887, RNA1509_41889, RNA1509_514, RNA1509_8519, RNA815_1672.2} |
| 4. | MligTC455_21959 | 458 | 9.54 | Mlig455_037394 | Neo: Int S/G2/M Age: - Regeneration-upregulated BL: 2.145 Regeneration-enriched BL: 2.145 |
YY1AP1 | 1.783 | - | - | - | 0.814 | - | 0.969 | Mlig455_037394 {REF} {Length: 6292} {TRANSSPLICED} {Pfam: Myb-like DNA-binding domain [PF00249.33, score=26.8]; Myb-like DNA-binding domain [PF13921.8, score=21.7]} {Human: ENSG00000163374, YY1AP1, YY1 associated protein 1, [RH, Score=61.6, Expect=1e-08]; ENSG00000116580, GON4L, gon-4 like, [RH, Score=59.7, Expect=5e-08]} {Mouse: ENSMUSG00000054199, Gon4l, gon-4-like (C.elegans), [RH, Score=55.8, Expect=6e-07]} {RNA1509_7143, RNA1509_9438} {RNA1310_696.1, RNA1509_9438} {RNA1509_9438, RNA815_3771} |
| 5. | MligTC455_42499 | 982 | 20.45 | Mlig455_062692 | Neo: Irradiation Age: - Region-enriched R4: 1.491/0.00202 |
PPHLN1 | 1.73 | - | - | - | 0.962 | - | 0.768 | Mlig455_062692 {REF} {Length: 2168} {Pfam: Transcriptional regulatory protein LGE1 [PF11488.10, score=19.5]} {Human: ENSG00000134283, PPHLN1, periphilin 1, [Score=73.9, Expect=4e-14]} {Mouse: ENSMUSG00000036167, Pphln1, periphilin 1, [Score=73.6, Expect=2e-14]} {Smed: dd_Smed_v6_3002_0_2, dd_Smed_v6_3002_0_2, [Score=73.2, Expect=3e-14]} {RNA1509_3916} {RNA1310_29650.1} {RNA815_12725} |
| 6. | MligTC455_49867 | 590 | 12.3 | Mlig455_011558 | Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.462 Region-enriched R4: 1.418/0.00393 |
CSNK1A1 | 1.667 | - | 0.712 | - | 0.955 | - | - | Mlig455_011558 {REF} {Length: 2036} {Pfam: Protein kinase domain [PF00069.27, score=99.2]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=61.6]; Fungal protein kinase [PF17667.3, score=34.9]} {Human: ENSG00000113712, CSNK1A1, casein kinase 1 alpha 1, [RH, Score=585, Expect=0.0]} {Mouse: ENSMUSG00000024576, Csnk1a1, casein kinase 1, alpha 1, [RH, Score=585, Expect=0.0]} {Dmel: FBgn0015024, CkIalpha, Casein kinase Ialpha, [RH, Score=498, Expect=5e-179]} {Celegans: WBGene00002202, kin-19, Casein kinase I isoform alpha, [RH, Score=558, Expect=0.0]} {Smed: dd_Smed_v6_1989_0_1, dd_Smed_v6_1989_0_1, [RH, Score=574, Expect=0.0]} {RNA1509_1920} {RNA1310_7964} {RNA815_4066.1} |
| 7. | MligTC455_31170 | 455 | 9.48 | Mlig455_024531 | Neo: - Age: - Regeneration-downregulated R4: -1.961 Regeneration-depleted R4: -1.961 |
GRXCR1 | 0.968 | - | - | - | - | 0.968 | - | Mlig455_024531 {REF} {Length: 2715} {TRANSSPLICED} {Pfam: Glutaredoxin [PF00462.26, score=27.6]} {Human: ENSG00000215203, GRXCR1, glutaredoxin and cysteine rich domain containing 1, [RH, Score=112, Expect=2e-28]} {Mouse: ENSMUSG00000068082, Grxcr1, glutaredoxin, cysteine rich 1, [RH, Score=114, Expect=2e-29]} {Dmel: FBgn0051559, CG31559, [RH, Score=110, Expect=8e-27]} {RNA1509_48519} {RNA1310_27075} {RNA815_22070.1} |
| 8. | MligTC455_34125 | 556 | 11.58 | Mlig455_049354 | Neo: - Age: - |
MPDZ | 0.968 | - | - | - | - | 0.968 | - | Mlig455_049354 {REF} {Length: 8195} {Pfam: PDZ domain [PF00595.26, score=481.5]; PDZ domain [PF17820.3, score=245.9]; PDZ domain [PF13180.8, score=160.6]; Family of unknown function (DUF6288) [PF19805.1, score=27.8]} {Human: ENSG00000107186, MPDZ, multiple PDZ domain crumbs cell polarity complex component, [RH, Score=312, Expect=6e-85]} {Mouse: ENSMUSG00000028402, Mpdz, multiple PDZ domain protein, [RH, Score=308, Expect=8e-84]} {Dmel: FBgn0067864, Patj, [Score=244, Expect=1e-66]} {Celegans: WBGene00003404, mpz-1, Multiple PDZ domain protein, [Score=210, Expect=6e-54]} {Smed: dd_Smed_v6_5376_0_2, dd_Smed_v6_5376_0_2, [RH, Score=379, Expect=7e-106]} {RNA1509_52171} {RNA1310_2164} {RNA815_9270} |
| 9. | MligTC455_20525 | 835 | 17.4 | Mlig455_011504 | Neo: - Age: Up-Down-Down |
KMT2C | 0.955 | - | - | - | - | 0.955 | - | Mlig455_011504 {REF} {Length: 14333} {TRANSSPLICED} {Pfam: PHD-finger [PF00628.31, score=101.1]; F/Y rich C-terminus [PF05965.16, score=82.0]; SET domain [PF00856.30, score=71.8]; F/Y-rich N-terminus [PF05964.16, score=63.3]; PHD-zinc-finger like domain [PF13832.8, score=56.8]; PHD-like zinc-binding domain [PF13771.8, score=49.6]; PHD-finger [PF13831.8, score=18.4]} {Human: ENSG00000055609, KMT2C, lysine methyltransferase 2C, [RH, Score=647, Expect=0.0]} {Mouse: ENSMUSG00000038056, Kmt2c, lysine (K)-specific methyltransferase 2C, [RH, Score=642, Expect=0.0]} {Dmel: FBgn0023518, trr, trithorax-related, [RH, Score=573, Expect=3e-165]} {Celegans: WBGene00011729, set-16, Histone-lysine N-methyltransferase, [RH, Score=227, Expect=8e-59]} {Smed: dd_Smed_v6_6838_0_1, dd_Smed_v6_6838_0_1, [Score=570, Expect=8e-172]} {RNA1509_12609} {RNA1310_2188} {RNA815_5011} |
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