M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_27815

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_27815 1267 26.39 Mlig455_003681, Mlig455_007743, Mlig455_008454, Mlig455_014548, Mlig455_019559, Mlig455_023634, Mlig455_026256, Mlig455_029577, Mlig455_043741, Mlig455_070803

Neo: -

Age: logFC(26M/2M)=0.722

Regeneration-upregulated BL: 2.777

Regeneration-enriched BL: 2.777

Mlig455_003681 {REF} {Length: 907} {RNA1509_8341} {RNA1310_50077} {RNA815_2170.1}

Mlig455_007743 {REF} {Length: 185} {NoTransDecoderORF} {RNA1509_8341} {RNA1310_76950} {RNA815_2170.1}

Mlig455_008454 {REF} {Length: 175} {NoTransDecoderORF} {RNA1509_8341} {RNA1310_76950} {RNA815_2170.1}

Mlig455_014548 {REF} {Length: 352} {RNA1509_8341} {RNA1310_50077} {RNA815_2170.1}

Mlig455_019559 {REF} {Length: 1856} {TRANSSPLICED} {RNA1509_8341} {RNA1310_843} {RNA815_2170.1}

Mlig455_023634 {REF} {Length: 1932} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_40233} {RNA1310_27331} {RNA815_2170.1}

Mlig455_026256 {REF} {Length: 1373} {RNA1509_13206} {RNA1310_1311.1} {RNA815_19414}

Mlig455_029577 {REF} {Length: 431} {RNA1509_40233} {RNA1310_27331} {RNA815_2170.2}

Mlig455_043741 {REF} {Length: 1856} {TRANSSPLICED} {RNA1509_8341} {RNA1310_843} {RNA815_2170.1}

Mlig455_070803 {REF} {Length: 7254} {RNA1509_55315} {RNA1310_14431} {RNA815_2170.1}

Cumulative graph for MligTC455_27815

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.585 4.975 0.36660 1.00000
RegionR2 1.28 4.975 0.13886 0.46308
RegionR3 0.253 4.975 0.74552 1.00000
RegionR4 0.916 4.975 0.27566 0.58248
RegionR5 -0.286 4.975 0.78040 1.00000
RegionR6 -0.201 4.975 0.85093 1.00000
RegionR7 1.063 4.975 0.24614 0.87257
RegionR8 -0.439 4.975 0.78972 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -3.161 4.975 0.65248 1.00000
RegenerationR2 0.912 4.975 0.17427 0.61429
RegenerationR3 1.048 4.975 0.15195 0.58145
RegenerationR4 1.077 4.975 0.14975 0.57767
RegenerationR5 1.665 4.975 0.02620 0.27579
RegenerationR6 2.587 4.975 0.00113 0.03716
RegenerationBL 2.777 4.975 0.00027 0.00922 Specific for BL: 2.777
RegenerationTP 2.451 4.975 0.00468 0.11370


Genes with expression patterns similar to MligTC455_27815

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_27815 1267 26.39 Mlig455_003681, Mlig455_007743, Mlig455_008454, Mlig455_014548, Mlig455_019559, Mlig455_023634, Mlig455_026256, Mlig455_029577, Mlig455_043741, Mlig455_070803

Neo: -

Age: logFC(26M/2M)=0.722

Regeneration-upregulated BL: 2.777

Regeneration-enriched BL: 2.777

 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_003681 {REF} {Length: 907} {RNA1509_8341} {RNA1310_50077} {RNA815_2170.1}

Mlig455_007743 {REF} {Length: 185} {NoTransDecoderORF} {RNA1509_8341} {RNA1310_76950} {RNA815_2170.1}

Mlig455_008454 {REF} {Length: 175} {NoTransDecoderORF} {RNA1509_8341} {RNA1310_76950} {RNA815_2170.1}

Mlig455_014548 {REF} {Length: 352} {RNA1509_8341} {RNA1310_50077} {RNA815_2170.1}

Mlig455_019559 {REF} {Length: 1856} {TRANSSPLICED} {RNA1509_8341} {RNA1310_843} {RNA815_2170.1}

Mlig455_023634 {REF} {Length: 1932} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_40233} {RNA1310_27331} {RNA815_2170.1}

Mlig455_026256 {REF} {Length: 1373} {RNA1509_13206} {RNA1310_1311.1} {RNA815_19414}

Mlig455_029577 {REF} {Length: 431} {RNA1509_40233} {RNA1310_27331} {RNA815_2170.2}

Mlig455_043741 {REF} {Length: 1856} {TRANSSPLICED} {RNA1509_8341} {RNA1310_843} {RNA815_2170.1}

Mlig455_070803 {REF} {Length: 7254} {RNA1509_55315} {RNA1310_14431} {RNA815_2170.1}
2. MligTC455_27814 1123 23.4 Mlig455_000431, Mlig455_025465, Mlig455_026673, Mlig455_031368, Mlig455_038310, Mlig455_064148, Mlig455_066134

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.823

Regeneration-upregulated BL: 2.840

Regeneration-enriched BL: 2.840

 4.378 - 0.777 0.968 0.871 0.979 0.783

Mlig455_000431 {REF} {Length: 7484} {RNA1509_16349, RNA1509_55826} {RNA1310_1311.1, RNA1509_16349, RNA1509_55826} {RNA1509_16349, RNA1509_55826, RNA815_19414}

Mlig455_025465 {REF} {Length: 2972} {RNA1509_8341} {RNA1310_843} {RNA815_1305.1}

Mlig455_026673 {REF} {Length: 758} {RNA1509_8341} {RNA1310_50077} {RNA815_2170.1}

Mlig455_031368 {REF} {Length: 392} {NoTransDecoderORF} {RNA1509_13206} {RNA1310_1311.1} {RNA815_19414}

Mlig455_038310 {REF} {Length: 963} {RNA1509_8341} {RNA1310_50077} {RNA815_2170.1}

Mlig455_064148 {REF} {Length: 5448} {TRANSSPLICED} {RNA1509_8946} {RNA1310_3396.1} {RNA815_1342.1}

Mlig455_066134 {REF} {Length: 3326} {RNA1509_8341} {RNA1310_843, RNA1509_8341} {RNA1509_8341, RNA815_2170.1}
3. MligTC455_27810 296 6.16 Mlig455_014545, Mlig455_031367

Neo: -

Age: -

 3.753 - - 0.987 0.933 0.976 0.857

Mlig455_014545 {REF} {Length: 1192} {RNA1509_8341} {RNA1310_843} {RNA815_2170.1}

Mlig455_031367 {REF} {Length: 663} {RNA1509_8341} {RNA1310_50077} {RNA815_2170.1}
4. MligTC455_28104 102 2.13 Mlig455_026681, Mlig455_026757

Neo: -

Age: -

 3.273 - - 0.967 0.773 0.773 0.760

Mlig455_026681 {REF} {Length: 1025} {NoTransDecoderORF} {RNA1509_57004} {RNA1310_13614.1} {RNA815_15623}

Mlig455_026757 {REF} {Length: 548} {NoTransDecoderORF} {RNA1509_57004} {RNA1310_15891} {RNA815_15623}
5. MligTC455_34109 388 8.07 Mlig455_036207, Mlig455_060306, Mlig455_064034, Mlig455_064415

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.742

 NYNRIN 2.533 - - 0.977 0.716 0.840 -

Mlig455_036207 {REF} {Length: 2552} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=114.4]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=112.9]; Integrase zinc binding domain [PF17921.3, score=66.2]; Integrase core domain [PF00665.28, score=46.4]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=28.2]; H2C2 zinc finger [PF09337.12, score=26.7]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=243, Expect=9e-68]} {RNA1509_34066} {RNA1310_1125} {RNA815_16355}

Mlig455_060306 {REF} {Length: 3314} {Pfam: Integrase core domain [PF00665.28, score=45.6]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=68.6, Expect=6e-12]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=66.6, Expect=2e-11]} {Smed: dd_Smed_v6_20599_0_1, dd_Smed_v6_20599_0_1, [Score=149, Expect=1e-41]} {RNA1509_45628} {RNA1310_4631.1} {RNA815_1825.1}

Mlig455_064034 {REF} {Length: 907} {Pfam: Integrase zinc binding domain [PF17921.3, score=65.0]; Integrase core domain [PF00665.28, score=41.0]; H2C2 zinc finger [PF09337.12, score=27.1]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=63.5, Expect=1e-10]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=65.1, Expect=3e-11]} {Smed: dd_Smed_v6_20599_0_1, dd_Smed_v6_20599_0_1, [Score=94.0, Expect=8e-22]} {RNA1310_90344}

Mlig455_064415 {REF} {Length: 9411} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=113.8]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=112.2]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=91.9]; Integrase zinc binding domain [PF17921.3, score=67.5]; Integrase core domain [PF00665.28, score=45.5]; H2C2 zinc finger [PF09337.12, score=29.0]; gag-polyprotein putative aspartyl protease [PF13975.8, score=26.5]; Aspartyl protease [PF13650.8, score=22.7]; Retroviral aspartyl protease [PF00077.22, score=19.9]} {Smed: dd_Smed_v6_1574_6_38, dd_Smed_v6_1574_6_38, [RH, Score=382, Expect=7e-119]} {RNA1509_34066} {RNA1310_1125} {RNA815_1825.1}
6. MligTC455_28111 790 16.45 Mlig455_002387, Mlig455_009539, Mlig455_038667, Mlig455_051333, Mlig455_056392, Mlig455_070777

Neo: -

Age: -

 2.482 - - 0.952 - 0.779 0.751

Mlig455_002387 {REF} {Length: 1959} {NoTransDecoderORF} {RNA1509_35798} {RNA1310_15891} {RNA815_15623}

Mlig455_009539 {REF} {Length: 900} {NoTransDecoderORF} {RNA1509_57004} {RNA1310_14078} {RNA815_15623}

Mlig455_038667 {REF} {Length: 1938} {NoTransDecoderORF} {RNA1509_57004} {RNA1310_15891} {RNA815_15623}

Mlig455_051333 {REF} {Length: 2762} {NoTransDecoderORF} {RNA1509_32637} {RNA1310_13614.1} {RNA815_15623}

Mlig455_056392 {REF} {Length: 356} {NoTransDecoderORF} {RNA1509_58039} {RNA1310_108088} {RNA815_16870}

Mlig455_070777 {REF} {Length: 237} {NoTransDecoderORF} {RNA1509_58039} {RNA1310_108088} {RNA815_16870}
7. MligTC455_38739 39 0.81 Mlig455_014528

Neo: -

Age: -

 1.818 - - 0.968 - 0.850 - Mlig455_014528 {REF} {Length: 1250} {NoTransDecoderORF} {RNA1509_13586} {RNA1310_52607} {RNA815_2048.1}
8. MligTC455_28985 114 2.38 Mlig455_058931

Neo: -

Age: -

 1.783 - - - - 0.953 0.830 Mlig455_058931 {REF} {Length: 5896} {RNA1509_20157} {RNA1310_23482} {RNA815_318.1}
9. MligTC455_36061 33 0.69 Mlig455_007140

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.616

 1.77 - - 0.973 - 0.797 - Mlig455_007140 {REF} {Length: 7333} {Smed: dd_Smed_v6_26523_0_1, dd_Smed_v6_26523_0_1, [Score=39.3, Expect=1e-05]} {RNA1509_21038} {RNA1310_17276.1} {RNA815_20842.1}
10. MligTC455_27806 83 1.72 Mlig455_038041

Neo: -

Age: -

 MAP3K4 1.745 - - 0.962 - 0.783 - Mlig455_038041 {REF} {Length: 3811} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=157.9]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=116.5]; Ankyrin repeats (3 copies) [PF12796.9, score=71.6]; Ankyrin repeats (many copies) [PF13637.8, score=54.4]; Ankyrin repeats (many copies) [PF13857.8, score=54.3]; Ankyrin repeat [PF00023.32, score=54.2]; Ankyrin repeat [PF13606.8, score=40.3]; Fungal protein kinase [PF17667.3, score=26.7]} {Human: ENSG00000085511, MAP3K4, mitogen-activated protein kinase kinase kinase 4, [Score=132, Expect=9e-31]; ENSG00000176601, MAP3K19, mitogen-activated protein kinase kinase kinase 19, [Score=129, Expect=6e-31]} {Mouse: ENSMUSG00000014426, Map3k4, mitogen-activated protein kinase kinase kinase 4, [Score=128, Expect=1e-29]; ENSMUSG00000051590, Map3k19, mitogen-activated protein kinase kinase kinase 19, [Score=123, Expect=4e-29]} {Dmel: FBgn0024329, Mekk1, [Score=123, Expect=3e-28]} {Celegans: WBGene00015646, mlt-10, [RH, Score=178, Expect=7e-47]} {Smed: dd_Smed_v6_3286_0_6, dd_Smed_v6_3286_0_6, [Score=112, Expect=3e-26]} {RNA1509_50870} {RNA1310_4206} {RNA815_5812}
11. MligTC455_51503 905 18.85 Mlig455_061287, Mlig455_062672

Neo: -

Age: -

 SON 1.734 0.757 - - 0.977 - -

Mlig455_061287 {REF} {Length: 5365} {TRANSSPLICED} {Pfam: HMG (high mobility group) box [PF00505.21, score=27.0]} {RNA1509_18023} {RNA1310_4715.1} {RNA815_16390}

Mlig455_062672 {REF} {Length: 5238} {Pfam: HMG (high mobility group) box [PF00505.21, score=36.2]; HMG-box domain [PF09011.12, score=29.6]} {Human: ENSG00000159140, SON, SON DNA binding protein, [Score=53.1, Expect=2e-06]; ENSG00000140382, HMG20A, high mobility group 20A, [Score=51.6, Expect=3e-06]} {Mouse: ENSMUSG00000022961, Son, Son DNA binding protein, [Score=55.5, Expect=2e-07]} {RNA1509_18023, RNA1509_30819, RNA1509_48158, RNA1509_56852} {RNA1310_4715.1, RNA1509_18023, RNA1509_30819, RNA1509_48158, RNA1509_56852} {RNA1509_18023, RNA1509_30819, RNA1509_48158, RNA1509_56852, RNA815_16390}
12. MligTC455_38740 49 1.02 Mlig455_014973

Neo: -

Age: -

 1.729 - - 0.962 - 0.767 - Mlig455_014973 {REF} {Length: 1732} {RNA1509_14379} {RNA1310_52607} {RNA815_11562.1}
13. MligTC455_48053 428 8.91 Mlig455_030322

Neo: -

Age: -

Region-enriched R5: 1.688/0.01804

 0.962 - - - 0.962 - - Mlig455_030322 {REF} {Length: 2055} {TRANSSPLICED} {Smed: dd_Smed_v6_7312_0_1, dd_Smed_v6_7312_0_1, [RH, Score=64.7, Expect=5e-11]} {RNA1509_33109, RNA1509_48332} {RNA1310_20980.1, RNA1509_33109, RNA1509_48332} {RNA1509_33109, RNA1509_48332, RNA815_15206}
14. MligTC455_27854 108 2.26 Mlig455_038475

Neo: -

Age: -

 0.961 - - - 0.961 - - Mlig455_038475 {REF} {Length: 2901} {Pfam: Zinc knuckle [PF00098.25, score=21.6]} {RNA1509_24163} {RNA1310_131.1} {RNA815_52.1}
15. MligTC455_12252 153 3.18 Mlig455_007987

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_007987 {REF} {Length: 516} {NoTransDecoderORF} {RNA1509_52260} {RNA1310_51099}
16. MligTC455_16964 15 0.31 Mlig455_038846

Neo: -

Age: -

 0.955 - - 0.955 - - - Mlig455_038846 {REF} {Length: 598} {NoTransDecoderORF} {RNA1310_139317} {RNA815_31479}
17. MligTC455_35158 162 3.37 Mlig455_003477, Mlig455_015581

Neo: -

Age: Up-Down-Down

Region-enriched R2: 2.644/0.02439

 0.951 - - - 0.951 - -

Mlig455_003477 {REF} {Length: 4625} {Smed: dd_Smed_v6_6330_0_1, dd_Smed_v6_6330_0_1, [Score=54.7, Expect=2e-07]} {RNA1509_48507} {RNA1310_11879.1, RNA1509_48507} {RNA1509_48507, RNA815_5151}

Mlig455_015581 {REF} {Length: 4105} {Smed: dd_Smed_v6_6330_0_1, dd_Smed_v6_6330_0_1, [Score=55.1, Expect=2e-07]} {RNA1509_48507} {RNA1310_11879.1} {RNA815_5151}
18. MligTC455_53097 510 10.63 Mlig455_002984, Mlig455_055616

Neo: -

Age: Down-Up-Down

Region-enriched R2: 2.486/0.00600

 CHIC2 0.951 - - - 0.951 - -

Mlig455_002984 {REF} {Length: 2704} {Pfam: Golgin subfamily A member 7/ERF4 family [PF10256.11, score=44.8]} {Human: ENSG00000109220, CHIC2, cysteine rich hydrophobic domain 2, [RH, Score=162, Expect=4e-51]; ENSG00000204116, CHIC1, cysteine rich hydrophobic domain 1, [RH, Score=161, Expect=5e-50]} {Mouse: ENSMUSG00000029229, Chic2, cysteine-rich hydrophobic domain 2, [RH, Score=163, Expect=1e-51]; ENSMUSG00000031327, Chic1, cysteine-rich hydrophobic domain 1, [RH, Score=160, Expect=6e-50]} {Dmel: FBgn0046247, CG5938, [RH, Score=161, Expect=4e-51]} {Celegans: WBGene00044319, tag-266, Cysteine-rich hydrophobic protein, [Score=163, Expect=9e-52]} {Smed: dd_Smed_v6_4955_0_1, dd_Smed_v6_4955_0_1, [RH, Score=132, Expect=7e-40]} {RNA1509_11522} {RNA1310_1228.2, RNA1509_11522} {RNA1509_11522, RNA815_2491}

Mlig455_055616 {REF} {Length: 2066} {Pfam: Golgin subfamily A member 7/ERF4 family [PF10256.11, score=44.8]} {Human: ENSG00000109220, CHIC2, cysteine rich hydrophobic domain 2, [RH, Score=162, Expect=4e-51]; ENSG00000204116, CHIC1, cysteine rich hydrophobic domain 1, [RH, Score=161, Expect=5e-50]} {Mouse: ENSMUSG00000029229, Chic2, cysteine-rich hydrophobic domain 2, [RH, Score=163, Expect=1e-51]; ENSMUSG00000031327, Chic1, cysteine-rich hydrophobic domain 1, [RH, Score=160, Expect=6e-50]} {Dmel: FBgn0046247, CG5938, [RH, Score=161, Expect=4e-51]} {Celegans: WBGene00044319, tag-266, Cysteine-rich hydrophobic protein, [Score=163, Expect=9e-52]} {Smed: dd_Smed_v6_4955_0_1, dd_Smed_v6_4955_0_1, [RH, Score=132, Expect=7e-40]} {RNA1509_11522} {RNA1310_1228.2} {RNA815_2491}
19. MligTC455_02758 129 2.69 Mlig455_001648, Mlig455_001715

Neo: -

Age: logFC(26M/2M)=-0.349

 0.95 - - 0.950 - - -

Mlig455_001648 {REF} {Length: 2010} {Pfam: Death domain [PF00531.24, score=20.4]} {RNA1509_32212, RNA1509_57415} {RNA1310_29260, RNA1509_32212, RNA1509_57415} {RNA1509_32212, RNA1509_57415, RNA815_17490}

Mlig455_001715 {REF} {Length: 1221} {RNA1509_32212} {RNA1310_56586} {RNA815_40737.1}
20. MligTC455_34027 544 11.32 Mlig455_045927

Neo: -

Age: -

 ANK2 0.95 - - - 0.950 - - Mlig455_045927 {REF} {Length: 6759} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=521.9]; Ankyrin repeats (many copies) [PF13637.8, score=499.0]; Ankyrin repeat [PF13606.8, score=300.6]; Ankyrin repeats (many copies) [PF13857.8, score=298.4]; Ankyrin repeat [PF00023.32, score=217.0]; Domain of unknown function (DUF3447) [PF11929.10, score=24.3]} {Human: ENSG00000145362, ANK2, ankyrin 2, [Score=212, Expect=5e-55]} {Mouse: ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=213, Expect=2e-55]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=189, Expect=8e-48]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=175, Expect=7e-44]} {Smed: dd_Smed_v6_5303_0_2, dd_Smed_v6_5303_0_2, [Score=200, Expect=2e-52]} {RNA1509_36116, RNA1509_5331, RNA1509_57055, RNA1509_8769} {RNA1310_648, RNA1509_36116, RNA1509_5331, RNA1509_57055, RNA1509_8769} {RNA1509_36116, RNA1509_5331, RNA1509_57055, RNA1509_8769, RNA815_241}
21. MligTC455_42192 193 4.03 Mlig455_014551, Mlig455_048360

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.405

 0.95 - - - 0.950 - -

Mlig455_014551 {REF} {Length: 1927} {TRANSSPLICED} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=52.9]; Capsular polysaccharide synthesis protein [PF05704.14, score=18.8]} {Smed: dd_Smed_v6_6819_0_1, dd_Smed_v6_6819_0_1, [Score=144, Expect=4e-40]} {RNA1509_15387} {RNA1310_18607} {RNA815_7321}

Mlig455_048360 {REF} {Length: 1891} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=37.1]; Capsular polysaccharide synthesis protein [PF05704.14, score=19.6]} {Smed: dd_Smed_v6_7249_0_1, dd_Smed_v6_7249_0_1, [Score=110, Expect=4e-29]} {RNA1509_15387} {RNA1310_18607} {RNA815_7321}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA