M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_48412

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_48412 1608 33.50 Mlig455_067102

Neo: -

Age: Down-Down-Up

 Mlig455_067102 {REF} {Length: 1614} {TRANSSPLICED} {RNA1509_18861} {RNA1310_41212} {RNA815_44029}

Cumulative graph for MligTC455_48412

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.778 5.28 0.06020 0.56311
RegionR2 -0.047 5.28 0.90579 1.00000
RegionR3 0.367 5.28 0.23962 0.78060
RegionR4 0.885 5.28 0.01163 0.06833
RegionR5 0.869 5.28 0.00193 0.01697
RegionR6 -0.117 5.28 0.72440 1.00000
RegionR7 0.564 5.28 0.11335 0.63820
RegionR8 -0.744 5.28 0.15018 0.70436

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 2.145 5.28 0.05707 0.72086
RegenerationR2 0.216 5.28 0.50885 0.87495
RegenerationR3 0.149 5.28 0.67416 0.93853
RegenerationR4 0.139 5.28 0.69483 0.95176
RegenerationR5 -0.128 5.28 0.69338 0.94920
RegenerationR6 0.664 5.28 0.06773 0.32645
RegenerationBL 0.082 5.28 0.84108 1.00000
RegenerationTP 0.352 5.28 0.41753 0.84215


Genes with expression patterns similar to MligTC455_48412

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_48412 1608 33.5 Mlig455_067102

Neo: -

Age: Down-Down-Up

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_067102 {REF} {Length: 1614} {TRANSSPLICED} {RNA1509_18861} {RNA1310_41212} {RNA815_44029}
2. MligTC455_32510 687 14.31 Mlig455_060986

Neo: Int S/G2/M

Age: -

Regeneration-upregulated BL: 3.181

Regeneration-enriched BL: 3.181

 RPS28 1.817 - - - - 0.955 0.862 Mlig455_060986 {REF} {Length: 390} {TRANSSPLICED} {Pfam: Ribosomal protein S28e [PF01200.20, score=110.6]} {Human: ENSG00000233927, RPS28, ribosomal protein S28, [RH, Score=114, Expect=4e-35]} {Mouse: ENSMUSG00000067288, Rps28, ribosomal protein S28, [RH, Score=114, Expect=2e-35]} {Dmel: FBgn0030136, RpS28b, Ribosomal protein S28b, [RH, Score=101, Expect=2e-30]} {Celegans: WBGene00004497, rps-28, 40S ribosomal protein S28, [RH, Score=107, Expect=9e-33]} {Smed: dd_Smed_v6_65_0_1, dd_Smed_v6_65_0_1, [RH, Score=104, Expect=1e-31]} {RNA1509_9829} {RNA1310_79679.1} {RNA815_44996}
3. MligTC455_22462 198 4.12 Mlig455_066858

Neo: -

Age: -

 1.732 - - - - 0.951 0.781 Mlig455_066858 {REF} {Length: 1973} {RNA1509_45595} {RNA1310_70696} {RNA815_7856.3}
4. MligTC455_47193 376 7.83 Mlig455_057318

Neo: -

Age: -

 1.724 - - - - 0.953 0.771 Mlig455_057318 {REF} {Length: 1670} {RNA1509_21922} {RNA1310_75967} {RNA815_43814}
5. MligTC455_47192 381 7.93 Mlig455_037557

Neo: -

Age: -

 CTNNBL1 1.723 - - - - 0.950 0.773 Mlig455_037557 {REF} {Length: 3038} {TRANSSPLICED} {Pfam: Catenin-beta-like, Arm-motif containing nuclear [PF08216.13, score=104.3]} {Human: ENSG00000132792, CTNNBL1, catenin beta like 1, [RH, Score=470, Expect=4e-160]} {Mouse: ENSMUSG00000027649, Ctnnbl1, catenin, beta like 1, [RH, Score=467, Expect=7e-159]} {Dmel: FBgn0037644, CG11964, [RH, Score=474, Expect=1e-161]} {Celegans: WBGene00019711, M01E11.2, [RH, Score=368, Expect=1e-120]} {Smed: dd_Smed_v6_1800_0_2, dd_Smed_v6_1800_0_2, [RH, Score=355, Expect=2e-115]} {RNA1509_25982} {RNA1310_586.3, RNA1509_25982} {RNA1509_25982, RNA815_6423}
6. MligTC455_46950 1183 24.65 Mlig455_030580

Neo: Neoblast, stringent

Age: Down-Up-Down

 DPY30 1.717 - - - - 0.951 0.766 Mlig455_030580 {REF} {Length: 1041} {Pfam: Dpy-30 motif [PF05186.15, score=70.9]} {Human: ENSG00000162961, DPY30, dpy-30, histone methyltransferase complex regulatory subunit, [RH, Score=91.7, Expect=2e-24]} {Mouse: ENSMUSG00000024067, Dpy30, dpy-30, histone methyltransferase complex regulatory subunit, [Score=92.0, Expect=9e-25]} {Dmel: FBgn0035491, Dpy-30L2, Dpy-30-like 2, [RH, Score=70.9, Expect=9e-17]} {Celegans: WBGene00001088, dpy-30, Dosage compensation protein dpy-30, [RH, Score=81.6, Expect=9e-21]} {Smed: dd_Smed_v6_9103_0_1, dd_Smed_v6_9103_0_1, [RH, Score=80.5, Expect=2e-20]} {RNA1509_7134} {RNA1310_35941.1} {RNA815_41374}
7. MligTC455_44916 688 14.33 Mlig455_025259

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.436

 GMPPA 1.713 - - - 0.750 - 0.963 Mlig455_025259 {REF} {Length: 1859} {TRANSSPLICED} {Pfam: Nucleotidyl transferase [PF00483.25, score=97.0]; Bacterial transferase hexapeptide (six repeats) [PF00132.26, score=29.6]; MobA-like NTP transferase domain [PF12804.9, score=21.3]} {Human: ENSG00000144591, GMPPA, GDP-mannose pyrophosphorylase A, [RH, Score=458, Expect=1e-159]} {Mouse: ENSMUSG00000033021, Gmppa, GDP-mannose pyrophosphorylase A, [RH, Score=461, Expect=4e-161]} {Dmel: FBgn0034035, CG8207, [RH, Score=450, Expect=1e-156]} {Celegans: WBGene00021628, Y47D9A.1, [RH, Score=398, Expect=9e-137]} {Smed: dd_Smed_v6_4150_0_1, dd_Smed_v6_4150_0_1, [RH, Score=496, Expect=6e-175]} {RNA1509_37379} {RNA1310_15544, RNA1509_37379} {RNA1509_37379, RNA815_10312.2}
8. MligTC455_24858 1486 30.96 Mlig455_010034

Neo: -

Age: Down-Up-Down

Region-enriched R3: 2.400/0.00000
Region-enriched R6: 1.421/0.04359
Region-enriched R5: 1.196/0.02139

 0.966 - - - - 0.966 - Mlig455_010034 {REF} {Length: 2774} {Pfam: Multi-glycosylated core protein 24 (MGC-24), sialomucin [PF05283.13, score=48.3]} {Mouse: ENSMUSG00000050912, Tmem123, transmembrane protein 123, [Score=44.3, Expect=1e-05]} {Dmel: FBgn0045823, vsg, visgun, [RH, Score=53.1, Expect=8e-09]} {Smed: dd_Smed_v6_828_0_1, dd_Smed_v6_828_0_1, [RH, Score=50.8, Expect=1e-09]} {RNA1509_3563, RNA1509_4599, RNA1509_7753} {RNA1310_22791, RNA1509_3563, RNA1509_4599, RNA1509_7753} {RNA1509_3563, RNA1509_4599, RNA1509_7753, RNA815_10514.1}
9. MligTC455_30145 5438 113.28 Mlig455_020349

Neo: Neoblast

Age: -

Region-enriched R5: 1.011/0.00662

 CNBP 0.964 - - - - 0.964 - Mlig455_020349 {REF} {Length: 1052} {TRANSSPLICED} {Pfam: Zinc knuckle [PF00098.25, score=116.6]; Zinc knuckle [PF13696.8, score=33.1]; Zinc knuckle [PF13917.8, score=32.5]; GAG-polyprotein viral zinc-finger [PF14787.8, score=30.3]} {Human: ENSG00000169714, CNBP, CCHC-type zinc finger nucleic acid binding protein, [Score=72.4, Expect=4e-16]} {Mouse: ENSMUSG00000030057, Cnbp, cellular nucleic acid binding protein, [Score=72.4, Expect=3e-16]} {Dmel: FBgn0034802, CNBP, CCHC-type zinc finger nucleic acid binding protein, [Score=68.2, Expect=6e-15]} {Celegans: WBGene00001599, glh-2, ATP-dependent RNA helicase glh-2, [Score=70.5, Expect=8e-15]} {Smed: dd_Smed_v6_301_0_1, dd_Smed_v6_301_0_1, [Score=87.0, Expect=4e-22]} {RNA1509_27035, RNA1509_4252, RNA1509_43087, RNA1509_4799, RNA1509_8605} {RNA1310_32324.2, RNA1509_4252, RNA1509_43087, RNA1509_4799, RNA1509_8605} {RNA1509_4252, RNA1509_43087, RNA1509_4799, RNA1509_8605, RNA815_34403}
10. MligTC455_41534 994 20.71 Mlig455_000500

Neo: -

Age: Up-Down-Up

Region-enriched R4: 1.368/0.00790

 CHKB 0.963 - - - - - 0.963 Mlig455_000500 {REF} {Length: 2071} {TRANSSPLICED} {Pfam: Choline/ethanolamine kinase [PF01633.22, score=189.5]; Phosphotransferase enzyme family [PF01636.25, score=37.1]; Ecdysteroid kinase-like family [PF02958.22, score=20.3]} {Human: ENSG00000100288, CHKB, choline kinase beta, [RH, Score=265, Expect=6e-84]} {Mouse: ENSMUSG00000022617, Chkb, choline kinase beta, [RH, Score=270, Expect=6e-86]} {Dmel: FBgn0032955, CG2201, [RH, Score=138, Expect=2e-35]} {Celegans: WBGene00000510, cka-2, Choline kinase A2, [Score=201, Expect=1e-59]} {Smed: dd_Smed_v6_10949_0_1, dd_Smed_v6_10949_0_1, [Score=97.8, Expect=2e-22]} {RNA1509_7225} {RNA1310_10539.1} {RNA815_4103}
11. MligTC455_49246 2098 43.71 Mlig455_059231

Neo: -

Age: -

 SLC25A22 0.961 - - - - - 0.961 Mlig455_059231 {REF} {Length: 1633} {TRANSSPLICED} {Pfam: Mitochondrial carrier protein [PF00153.29, score=214.4]} {Human: ENSG00000177542, SLC25A22, solute carrier family 25 member 22, [RH, Score=328, Expect=1e-111]} {Mouse: ENSMUSG00000019082, Slc25a22, solute carrier family 25 (mitochondrial carrier, glutamate), member 22, [RH, Score=328, Expect=7e-112]} {Dmel: FBgn0260743, GC1, Glutamate Carrier 1, [RH, Score=353, Expect=5e-122]} {Celegans: WBGene00008979, F20D1.9, [RH, Score=325, Expect=5e-111]} {Smed: dd_Smed_v6_8518_0_1, dd_Smed_v6_8518_0_1, [RH, Score=368, Expect=2e-128]} {RNA1509_13201} {RNA1310_19593, RNA1509_13201} {RNA1509_13201, RNA815_7974.1}
12. MligTC455_28605 7769 161.85 Mlig455_013392

Neo: -

Age: -

 SDCBP 0.956 - - - - 0.956 - Mlig455_013392 {REF} {Length: 3330} {TRANSSPLICED} {Pfam: PDZ domain [PF00595.26, score=85.3]; PDZ domain [PF17820.3, score=65.3]; PDZ domain [PF13180.8, score=43.8]} {Human: ENSG00000137575, SDCBP, syndecan binding protein, [RH, Score=298, Expect=5e-101]} {Mouse: ENSMUSG00000028249, Sdcbp, syndecan binding protein, [RH, Score=301, Expect=3e-102]} {Smed: dd_Smed_v6_387_0_1, dd_Smed_v6_387_0_1, [RH, Score=290, Expect=2e-98]} {RNA1509_15081, RNA1509_1662, RNA1509_57397, RNA1509_59498, RNA1509_7326, RNA1509_9212, RNA1509_9642} {RNA1310_20625.1, RNA1509_15081, RNA1509_57397, RNA1509_59498, RNA1509_7326, RNA1509_9212, RNA1509_9642} {RNA1509_15081, RNA1509_57397, RNA1509_59498, RNA1509_7326, RNA1509_9212, RNA1509_9642, RNA815_1721.1}
13. MligTC455_20912 1132 23.59 Mlig455_060152

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.543

Region-enriched R4: 1.823/0.00485
Region-enriched R5: 1.098/0.04573

 RPS12 0.954 - - - - - 0.954 Mlig455_060152 {REF} {Length: 776} {TRANSSPLICED} {Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family [PF01248.28, score=96.7]} {Human: ENSG00000112306, RPS12, ribosomal protein S12, [Score=160, Expect=3e-51]} {Mouse: ENSMUSG00000061983, Rps12, ribosomal protein S12, [Score=160, Expect=2e-51]; ENSMUSG00000067038, Rps12-ps3, ribosomal protein S12, pseudogene 3, [Score=160, Expect=2e-51]} {Dmel: FBgn0260441, RpS12, Ribosomal protein S12, [Score=142, Expect=2e-44]} {Celegans: WBGene00004481, rps-12, 40S ribosomal protein S12, [Score=120, Expect=5e-36]} {Smed: dd_Smed_v6_94979_0_1, dd_Smed_v6_94979_0_1, [Score=153, Expect=3e-49]} {RNA1509_1190} {RNA1310_46273} {RNA815_22452.1}
14. MligTC455_43367 8430 175.63 Mlig455_030055, Mlig455_030091, Mlig455_030154

Neo: Int S/G2/M

Age: Down-Up-Up, logFC(26M/2M)=0.199

 HINT1 0.954 - - - - - 0.954

Mlig455_030055 {REF} {Length: 650} {TRANSSPLICED} {Pfam: HIT domain [PF01230.25, score=96.7]; Scavenger mRNA decapping enzyme C-term binding [PF11969.10, score=72.8]} {Human: ENSG00000169567, HINT1, histidine triad nucleotide binding protein 1, [RH, Score=179, Expect=2e-58]} {Mouse: ENSMUSG00000020267, Hint1, histidine triad nucleotide binding protein 1, [RH, Score=176, Expect=3e-57]} {Dmel: FBgn0031459, CG2862, [RH, Score=162, Expect=1e-51]} {Celegans: WBGene00009002, hint-1, Histidine triad nucleotide-binding protein 1, [RH, Score=167, Expect=4e-54]} {Smed: dd_Smed_v6_3055_0_1, dd_Smed_v6_3055_0_1, [RH, Score=193, Expect=3e-64]} {RNA1509_10253, RNA1509_10348, RNA1509_44196} {RNA1310_45963, RNA1509_10253, RNA1509_10348, RNA1509_44196} {RNA1509_10253, RNA1509_10348, RNA1509_44196, RNA815_28958.1}

Mlig455_030091 {REF} {Length: 645} {TRANSSPLICED} {Pfam: HIT domain [PF01230.25, score=96.7]; Scavenger mRNA decapping enzyme C-term binding [PF11969.10, score=72.8]} {Human: ENSG00000169567, HINT1, histidine triad nucleotide binding protein 1, [RH, Score=179, Expect=2e-58]} {Mouse: ENSMUSG00000020267, Hint1, histidine triad nucleotide binding protein 1, [RH, Score=176, Expect=3e-57]} {Dmel: FBgn0031459, CG2862, [RH, Score=162, Expect=1e-51]} {Celegans: WBGene00009002, hint-1, Histidine triad nucleotide-binding protein 1, [RH, Score=167, Expect=4e-54]} {Smed: dd_Smed_v6_3055_0_1, dd_Smed_v6_3055_0_1, [RH, Score=194, Expect=3e-64]} {RNA1509_10253} {RNA1310_45963} {RNA815_28958.1}

Mlig455_030154 {REF} {Length: 629} {TRANSSPLICED} {Pfam: HIT domain [PF01230.25, score=96.7]; Scavenger mRNA decapping enzyme C-term binding [PF11969.10, score=72.8]} {Human: ENSG00000169567, HINT1, histidine triad nucleotide binding protein 1, [RH, Score=179, Expect=2e-58]} {Mouse: ENSMUSG00000020267, Hint1, histidine triad nucleotide binding protein 1, [RH, Score=176, Expect=3e-57]} {Dmel: FBgn0031459, CG2862, [RH, Score=162, Expect=1e-51]} {Celegans: WBGene00009002, hint-1, Histidine triad nucleotide-binding protein 1, [RH, Score=167, Expect=4e-54]} {Smed: dd_Smed_v6_3055_0_1, dd_Smed_v6_3055_0_1, [RH, Score=194, Expect=3e-64]} {RNA1509_10253, RNA1509_15564} {RNA1310_45963, RNA1509_15564} {RNA1509_15564, RNA815_28958.1}
15. MligTC455_44674 1314 27.38 Mlig455_061139

Neo: -

Age: logFC(26M/2M)=-0.419

Region-enriched R5: 1.013/0.03021

 CIAO1 0.952 - - - - - 0.952 Mlig455_061139 {REF} {Length: 867} {Pfam: WD domain, G-beta repeat [PF00400.34, score=75.6]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=28.7]} {Human: ENSG00000144021, CIAO1, cytosolic iron-sulfur assembly component 1, [Score=115, Expect=4e-30]} {Mouse: ENSMUSG00000003662, Ciao1, cytosolic iron-sulfur protein assembly 1, [Score=115, Expect=1e-30]} {Dmel: FBgn0033972, Ciao1, [Score=105, Expect=6e-27]} {Celegans: WBGene00021899, Y54H5A.1, [Score=59.3, Expect=3e-10]} {Smed: dd_Smed_v6_6661_0_1, dd_Smed_v6_6661_0_1, [Score=117, Expect=2e-31]} {RNA1509_17029} {RNA1310_26308} {RNA815_12985}
16. MligTC455_49193 386 8.05 Mlig455_022529

Neo: -

Age: -

Region-enriched R4: 1.228/0.03615

 OTUD3 0.952 - - - - - 0.952 Mlig455_022529 {REF} {Length: 2208} {Pfam: OTU-like cysteine protease [PF02338.21, score=44.2]; Peptidase C65 Otubain [PF10275.11, score=24.4]} {Human: ENSG00000169914, OTUD3, OTU deubiquitinase 3, [Score=190, Expect=4e-57]} {Mouse: ENSMUSG00000041161, Otud3, OTU domain containing 3, [Score=185, Expect=2e-55]} {Smed: dd_Smed_v6_7154_0_1, dd_Smed_v6_7154_0_1, [Score=146, Expect=2e-42]} {RNA1509_18442} {RNA1310_8277} {RNA815_6103}
17. MligTC455_25822 4618 96.21 Mlig455_021919

Neo: -

Age: -

 OSTC 0.951 - - - - - 0.951 Mlig455_021919 {REF} {Length: 1992} {Pfam: OST3 / OST6 family, transporter family [PF04756.15, score=32.6]} {Human: ENSG00000198856, OSTC, oligosaccharyltransferase complex non-catalytic subunit, [RH, Score=211, Expect=4e-71]} {Mouse: ENSMUSG00000041084, Ostc, oligosaccharyltransferase complex subunit (non-catalytic), [RH, Score=210, Expect=7e-71]} {Dmel: FBgn0031529, CG9662, [RH, Score=189, Expect=2e-62]} {Smed: dd_Smed_v6_3467_0_1, dd_Smed_v6_3467_0_1, [RH, Score=204, Expect=6e-69]} {RNA1509_5118, RNA1509_6693, RNA1509_9520} {RNA1310_32278, RNA1509_5118, RNA1509_6693, RNA1509_9520} {RNA1509_5118, RNA1509_6693, RNA1509_9520, RNA815_14195}
18. MligTC455_35741 2900 60.42 Mlig455_012364

Neo: -

Age: -

Regeneration-upregulated BL: 1.183

Regeneration-enriched BL: 1.183

 STT3B 0.951 - - - - - 0.951 Mlig455_012364 {REF} {Length: 3138} {Pfam: Oligosaccharyl transferase STT3 subunit [PF02516.16, score=485.9]} {Human: ENSG00000163527, STT3B, STT3B, catalytic subunit of the oligosaccharyltransferase complex, [RH, Score=1140, Expect=0.0]} {Mouse: ENSMUSG00000032437, Stt3b, STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae), [RH, Score=1132, Expect=0.0]} {Dmel: FBgn0011336, Stt3B, Catalytic subunit 3B of the oligosaccharyltransferase complex, [RH, Score=1081, Expect=0.0]} {Celegans: WBGene00020437, stt-3, Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit stt-3, [RH, Score=1014, Expect=0.0]} {Smed: dd_Smed_v6_1614_0_1, dd_Smed_v6_1614_0_1, [RH, Score=1231, Expect=0.0]} {RNA1509_1360} {RNA1310_2492.1} {RNA815_757}
19. MligTC455_46368 570 11.88 Mlig455_062172

Neo: Irradiation

Age: -

Region-enriched R4: 1.546/0.00720

 TRMT2A 0.95 - - - - - 0.950 Mlig455_062172 {REF} {Length: 1467} {TRANSSPLICED} {Pfam: Methyltransferase domain [PF13847.8, score=19.6]} {Human: ENSG00000099899, TRMT2A, tRNA methyltransferase 2 homolog A, [Score=77.8, Expect=4e-15]; ENSG00000188917, TRMT2B, tRNA methyltransferase 2 homolog B, [Score=75.5, Expect=2e-14]} {Mouse: ENSMUSG00000067369, Trmt2b, TRM2 tRNA methyltransferase 2B, [Score=71.6, Expect=2e-13]; ENSMUSG00000098930, Trmt2a, TRM2 tRNA methyltransferase 2A, [Score=69.7, Expect=1e-12]; ENSMUSG00000022721, Trmt2a, TRM2 tRNA methyltransferase 2A, [Score=69.7, Expect=1e-12]} {Celegans: WBGene00019241, H24K24.4, [Score=48.5, Expect=3e-06]} {Smed: dd_Smed_v6_11602_0_1, dd_Smed_v6_11602_0_1, [Score=80.1, Expect=2e-16]} {RNA1509_8635} {RNA1310_19724} {RNA815_8550}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA