TomoSeq data search

Data search

Results for MligTC455_48831

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_48831

759

15.82

Mlig455_040825, Mlig455_040922

Neo: -

Age: logFC(26M/2M)=0.231

Region-enriched R4: 3.032/0.00938

FBXO38

Mlig455_040825 {REF} {Length: 4225} {Pfam: F-box-like [PF12937.9, score=32.9]; F-box domain [PF00646.35, score=20.4]} {Human: ENSG00000145868, FBXO38, F-box protein 38, [RH, Score=256, Expect=1e-69]} {Mouse: ENSMUSG00000042211, Fbxo38, F-box protein 38, [RH, Score=253, Expect=5e-69]} {Smed: dd_Smed_v6_7155_0_1, dd_Smed_v6_7155_0_1, [RH, Score=237, Expect=1e-63]} {RNA1509_10362, RNA1509_31016, RNA1509_55252, RNA1509_58294} {RNA1310_2269.1, RNA1509_10362, RNA1509_31016, RNA1509_55252, RNA1509_58294} {RNA1509_10362, RNA1509_31016, RNA1509_55252, RNA1509_58294, RNA815_7462}

Mlig455_040922 {REF} {Length: 4084} {TRANSSPLICED} {Pfam: F-box-like [PF12937.9, score=33.0]; F-box domain [PF00646.35, score=20.4]} {Human: ENSG00000145868, FBXO38, F-box protein 38, [RH, Score=257, Expect=4e-70]} {Mouse: ENSMUSG00000042211, Fbxo38, F-box protein 38, [RH, Score=254, Expect=2e-69]} {Smed: dd_Smed_v6_7155_0_1, dd_Smed_v6_7155_0_1, [RH, Score=237, Expect=6e-64]} {RNA1509_10362, RNA1509_34456} {RNA1310_2269.1, RNA1509_34456} {RNA1509_34456, RNA815_7462}

Cumulative graph for MligTC455_48831

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	0.737	4.354	0.60951	1.00000
RegionR2	-0.357	4.354	0.90681	1.00000
RegionR3	0.506	4.354	0.49624	0.99245
RegionR4	3.032	4.354	0.00087	0.00938
RegionR5	1.74	4.354	0.01499	0.07820
RegionR6	1.398	4.354	0.06143	0.46442
RegionR7	0.781	4.354	0.35002	0.98654
RegionR8	-7.836	4.354	0.00079	0.03984

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.247	4.354	0.90828	1.00000
RegenerationR2	-0.059	4.354	0.92900	1.00000
RegenerationR3	0.179	4.354	0.80247	0.98328
RegenerationR4	-1.013	4.354	0.19513	0.64032
RegenerationR5	-0.018	4.354	0.97417	1.00000
RegenerationR6	-0.236	4.354	0.73505	0.94434
RegenerationBL	3.36	4.354	0.00177	0.03326
RegenerationTP	2.186	4.354	0.26400	0.71203

Genes with expression patterns similar to MligTC455_48831

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_48831	759	15.82	Mlig455_040825, Mlig455_040922	Neo: - Age: logFC(26M/2M)=0.231 Region-enriched R4: 3.032/0.00938	FBXO38	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_040825 {REF} {Length: 4225} {Pfam: F-box-like [PF12937.9, score=32.9]; F-box domain [PF00646.35, score=20.4]} {Human: ENSG00000145868, FBXO38, F-box protein 38, [RH, Score=256, Expect=1e-69]} {Mouse: ENSMUSG00000042211, Fbxo38, F-box protein 38, [RH, Score=253, Expect=5e-69]} {Smed: dd_Smed_v6_7155_0_1, dd_Smed_v6_7155_0_1, [RH, Score=237, Expect=1e-63]} {RNA1509_10362, RNA1509_31016, RNA1509_55252, RNA1509_58294} {RNA1310_2269.1, RNA1509_10362, RNA1509_31016, RNA1509_55252, RNA1509_58294} {RNA1509_10362, RNA1509_31016, RNA1509_55252, RNA1509_58294, RNA815_7462} Mlig455_040922 {REF} {Length: 4084} {TRANSSPLICED} {Pfam: F-box-like [PF12937.9, score=33.0]; F-box domain [PF00646.35, score=20.4]} {Human: ENSG00000145868, FBXO38, F-box protein 38, [RH, Score=257, Expect=4e-70]} {Mouse: ENSMUSG00000042211, Fbxo38, F-box protein 38, [RH, Score=254, Expect=2e-69]} {Smed: dd_Smed_v6_7155_0_1, dd_Smed_v6_7155_0_1, [RH, Score=237, Expect=6e-64]} {RNA1509_10362, RNA1509_34456} {RNA1310_2269.1, RNA1509_34456} {RNA1509_34456, RNA815_7462}
2.	MligTC455_38908	380	7.92	Mlig455_051009	Neo: - Age: - Region-enriched R5: 1.591/0.04475		0.97	-	-	-	0.970	-	-	Mlig455_051009 {REF} {Length: 3679} {TRANSSPLICED} {Smed: dd_Smed_v6_5717_0_1, dd_Smed_v6_5717_0_1, [RH, Score=74.7, Expect=9e-14]} {RNA1509_10640, RNA1509_37449} {RNA1310_3931, RNA1509_10640, RNA1509_37449} {RNA1509_10640, RNA1509_37449, RNA815_7612}
3.	MligTC455_51961	415	8.65	Mlig455_011643	Neo: - Age: -	SETMAR	0.959	-	-	-	-	-	0.959	Mlig455_011643 {REF} {Length: 2363} {TRANSSPLICED} {Pfam: Transposase (partial DDE domain) [PF01359.20, score=31.9]} {Human: ENSG00000170364, SETMAR, SET domain and mariner transposase fusion gene, [Score=43.5, Expect=1e-05]} {Smed: dd_Smed_v6_47836_0_1, dd_Smed_v6_47836_0_1, [Score=43.9, Expect=3e-07]} {RNA1509_36216, RNA1509_54736} {RNA1310_1482.1, RNA1509_54736} {RNA1509_54736, RNA815_10965}
4.	MligTC455_40099	1638	34.12	Mlig455_051041	Neo: Int S/G2/M Age: Down-Up-Up, logFC(26M/2M)=0.282 Regeneration-upregulated BL: 1.263 Regeneration-enriched BL: 1.263	G3BP2	0.956	-	-	-	0.956	-	-	Mlig455_051041 {REF} {Length: 2412} {TRANSSPLICED} {Pfam: Nuclear transport factor 2 (NTF2) domain [PF02136.22, score=86.5]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=43.7]; Orn/Lys/Arg decarboxylase, C-terminal domain [PF03711.17, score=19.1]} {Human: ENSG00000138757, G3BP2, G3BP stress granule assembly factor 2, [RH, Score=162, Expect=4e-44]} {Mouse: ENSMUSG00000029405, G3bp2, GTPase activating protein (SH3 domain) binding protein 2, [RH, Score=162, Expect=4e-44]} {Dmel: FBgn0015778, rin, rasputin, [RH, Score=141, Expect=5e-36]} {Celegans: WBGene00010677, gtbp-1, Ras-Gtpase-activating protein SH3 (Three) domain-Binding Protein, [Score=53.5, Expect=2e-07]} {Smed: dd_Smed_v6_316_0_1, dd_Smed_v6_316_0_1, [RH, Score=132, Expect=2e-34]} {RNA1509_20144, RNA1509_29903, RNA1509_3175} {RNA1310_10257, RNA1509_20144, RNA1509_29903} {RNA1509_20144, RNA1509_29903, RNA815_10851}
5.	MligTC455_41902	352	7.33	Mlig455_019958	Neo: - Age: logFC(26M/2M)=0.448		0.956	-	-	-	0.956	-	-	Mlig455_019958 {REF} {Length: 1041} {TRANSSPLICED} {Pfam: Tetraspanin family [PF00335.22, score=77.6]} {Mouse: ENSMUSG00000034127, Tspan8, tetraspanin 8, [Score=47.8, Expect=4e-06]} {Smed: dd_Smed_v6_69681_0_1, dd_Smed_v6_69681_0_1, [Score=46.2, Expect=5e-06]} {RNA1509_56369} {RNA1310_26803} {RNA815_31654}
6.	MligTC455_27767	401	8.36	Mlig455_013431	Neo: - Age: Up-Down-Down	RIC1	0.955	-	-	-	0.955	-	-	Mlig455_013431 {REF} {Length: 6092} {TRANSSPLICED} {Pfam: RIC1 [PF07064.15, score=252.5]} {Human: ENSG00000107036, RIC1, RIC1 homolog, RAB6A GEF complex partner 1, [RH, Score=561, Expect=5e-173]} {Mouse: ENSMUSG00000038658, Ric1, RAB6A GEF complex partner 1, [RH, Score=558, Expect=4e-172]} {Dmel: FBgn0028500, Rich, RIC1 homolog, [RH, Score=474, Expect=2e-141]} {Celegans: WBGene00011071, R06F6.8, Guanine nucleotide exchange factor subunit R06F6.8, [RH, Score=375, Expect=4e-107]} {Smed: dd_Smed_v6_9205_0_1, dd_Smed_v6_9205_0_1, [RH, Score=577, Expect=0.0]} {RNA1509_8047} {RNA1310_1167.1} {RNA815_1297.1}
7.	MligTC455_50638	99	2.07	Mlig455_027343	Neo: - Age: -	SSRP1	0.954	-	-	-	0.954	-	-	Mlig455_027343 {REF} {Length: 2531} {TRANSSPLICED} {Pfam: POB3-like N-terminal PH domain [PF17292.4, score=82.6]; Histone chaperone Rttp106-like [PF08512.14, score=80.2]; Structure-specific recognition protein (SSRP1) [PF03531.16, score=79.1]; HMG (high mobility group) box [PF00505.21, score=75.5]; HMG-box domain [PF09011.12, score=54.7]; YABBY protein [PF04690.15, score=20.1]} {Human: ENSG00000149136, SSRP1, structure specific recognition protein 1, [RH, Score=557, Expect=0.0]} {Mouse: ENSMUSG00000027067, Ssrp1, structure specific recognition protein 1, [RH, Score=568, Expect=0.0]} {Dmel: FBgn0010278, Ssrp, Structure specific recognition protein, [RH, Score=444, Expect=3e-145]} {Celegans: WBGene00001973, hmg-3, FACT complex subunit ssrp1-B, [RH, Score=384, Expect=1e-122]} {Smed: dd_Smed_v6_3904_0_1, dd_Smed_v6_3904_0_1, [RH, Score=309, Expect=2e-96]} {RNA1509_24511, RNA1509_35204, RNA1509_44372, RNA1509_51872} {RNA1310_9322, RNA1509_35204, RNA1509_44372, RNA1509_51872} {RNA1509_35204, RNA1509_44372, RNA1509_51872, RNA815_4568}
8.	MligTC455_46144	230	4.8	Mlig455_037529	Neo: - Age: logFC(26M/2M)=-0.234	PDS5A	0.952	-	-	-	-	-	0.952	Mlig455_037529 {REF} {Length: 7763} {TRANSSPLICED} {Pfam: FANCI solenoid 2 [PF14676.8, score=19.2]} {Human: ENSG00000121892, PDS5A, PDS5 cohesin associated factor A, [RH, Score=422, Expect=3e-123]; ENSG00000083642, PDS5B, PDS5 cohesin associated factor B, [RH, Score=421, Expect=2e-122]} {Mouse: ENSMUSG00000029202, Pds5a, PDS5 cohesin associated factor A, [RH, Score=426, Expect=1e-124]} {Dmel: FBgn0260012, pds5, precocious dissociation of sisters 5, [Score=339, Expect=7e-96]} {Smed: dd_Smed_v6_6701_1_3, dd_Smed_v6_6701_1_3, [Score=251, Expect=6e-67]} {RNA1509_7371} {RNA1310_1423.1} {RNA815_501}
9.	MligTC455_46146	464	9.66	Mlig455_037604, Mlig455_058342	Neo: - Age: Up-Down-Up	PDS5A	0.952	-	-	-	-	-	0.952	Mlig455_037604 {REF} {Length: 10853} {TRANSSPLICED} {Pfam: FANCI solenoid 2 [PF14676.8, score=21.1]} {Human: ENSG00000121892, PDS5A, PDS5 cohesin associated factor A, [RH, Score=442, Expect=4e-130]; ENSG00000083642, PDS5B, PDS5 cohesin associated factor B, [RH, Score=439, Expect=9e-129]} {Mouse: ENSMUSG00000034021, Pds5b, PDS5 cohesin associated factor B, [RH, Score=449, Expect=8e-132]; ENSMUSG00000029202, Pds5a, PDS5 cohesin associated factor A, [RH, Score=442, Expect=2e-130]} {Dmel: FBgn0260012, pds5, precocious dissociation of sisters 5, [RH, Score=361, Expect=3e-103]} {Smed: dd_Smed_v6_6701_1_3, dd_Smed_v6_6701_1_3, [RH, Score=278, Expect=4e-75]} {RNA1509_55547, RNA1509_7371} {RNA1310_1423.1, RNA1509_55547} {RNA1509_55547, RNA815_501} Mlig455_058342 {REF} {Length: 8146} {Human: ENSG00000121892, PDS5A, PDS5 cohesin associated factor A, [Score=216, Expect=5e-56]; ENSG00000083642, PDS5B, PDS5 cohesin associated factor B, [Score=215, Expect=7e-56]} {Mouse: ENSMUSG00000034021, Pds5b, PDS5 cohesin associated factor B, [RH, Score=210, Expect=3e-56]} {Dmel: FBgn0260012, pds5, precocious dissociation of sisters 5, [Score=136, Expect=8e-32]} {Smed: dd_Smed_v6_6701_1_1, dd_Smed_v6_6701_1_1, [RH, Score=213, Expect=7e-56]} {RNA1509_7371} {RNA1310_1423.1} {RNA815_501}
10.	MligTC455_39119	469	9.76	Mlig455_047170, Mlig455_048512	Neo: - Age: logFC(26M/2M)=0.859 Region-enriched R4: 2.663/0.00988	RAC1	0.951	-	-	0.951	-	-	-	Mlig455_047170 {REF} {Length: 2656} {Pfam: Ras family [PF00071.24, score=256.5]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=126.1]; ADP-ribosylation factor family [PF00025.23, score=52.2]; Elongation factor Tu GTP binding domain [PF00009.29, score=24.2]; Bacterial TniB protein [PF05621.13, score=22.8]; 50S ribosome-binding GTPase [PF01926.25, score=20.2]} {Human: ENSG00000136238, RAC1, Rac family small GTPase 1, [Score=197, Expect=8e-60]; ENSG00000128340, RAC2, Rac family small GTPase 2, [Score=194, Expect=3e-58]; ENSG00000169750, RAC3, Rac family small GTPase 3, [Score=191, Expect=3e-57]; ENSG00000119729, RHOQ, ras homolog family member Q, [Score=189, Expect=3e-56]; ENSG00000070831, CDC42, cell division cycle 42, [Score=188, Expect=4e-56]; ENSG00000285721, AL031281.2, novel protein, identical to cell division cycle 42 (GTP binding protein, 25kDa) CDC42, [Score=188, Expect=4e-56]} {Mouse: ENSMUSG00000001847, Rac1, Rac family small GTPase 1, [Score=197, Expect=6e-60]; ENSMUSG00000033220, Rac2, Rac family small GTPase 2, [Score=192, Expect=6e-58]; ENSMUSG00000018012, Rac3, Rac family small GTPase 3, [Score=191, Expect=2e-57]; ENSMUSG00000006699, Cdc42, cell division cycle 42, [Score=188, Expect=3e-56]; ENSMUSG00000024143, Rhoq, ras homolog family member Q, [Score=188, Expect=4e-56]} {Dmel: FBgn0010333, Rac1, [Score=196, Expect=1e-59]} {Celegans: WBGene00000424, ced-10, Ras-related protein ced-10, [Score=194, Expect=4e-59]} {Smed: dd_Smed_v6_610_0_1, dd_Smed_v6_610_0_1, [Score=191, Expect=1e-57]} {RNA1509_10246} {RNA1310_7436, RNA1509_10246} {RNA1509_10246, RNA815_2869} Mlig455_048512 {REF} {Length: 2655} {Pfam: Ras family [PF00071.24, score=256.5]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=126.1]; ADP-ribosylation factor family [PF00025.23, score=52.2]; Elongation factor Tu GTP binding domain [PF00009.29, score=24.2]; Bacterial TniB protein [PF05621.13, score=22.8]; 50S ribosome-binding GTPase [PF01926.25, score=20.2]} {Human: ENSG00000136238, RAC1, Rac family small GTPase 1, [Score=197, Expect=8e-60]; ENSG00000128340, RAC2, Rac family small GTPase 2, [Score=194, Expect=3e-58]; ENSG00000169750, RAC3, Rac family small GTPase 3, [Score=191, Expect=3e-57]; ENSG00000119729, RHOQ, ras homolog family member Q, [Score=189, Expect=3e-56]; ENSG00000070831, CDC42, cell division cycle 42, [Score=188, Expect=4e-56]; ENSG00000285721, AL031281.2, novel protein, identical to cell division cycle 42 (GTP binding protein, 25kDa) CDC42, [Score=188, Expect=4e-56]} {Mouse: ENSMUSG00000001847, Rac1, Rac family small GTPase 1, [Score=197, Expect=5e-60]; ENSMUSG00000033220, Rac2, Rac family small GTPase 2, [Score=192, Expect=5e-58]; ENSMUSG00000018012, Rac3, Rac family small GTPase 3, [Score=191, Expect=2e-57]; ENSMUSG00000024143, Rhoq, ras homolog family member Q, [Score=188, Expect=4e-56]; ENSMUSG00000006699, Cdc42, cell division cycle 42, [Score=188, Expect=3e-56]} {Dmel: FBgn0010333, Rac1, [Score=196, Expect=1e-59]} {Celegans: WBGene00000424, ced-10, Ras-related protein ced-10, [Score=194, Expect=4e-59]} {Smed: dd_Smed_v6_610_0_1, dd_Smed_v6_610_0_1, [Score=191, Expect=1e-57]} {RNA1509_10246} {RNA1310_7436} {RNA815_2869}

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