M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_50219

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_50219 35 0.73 Mlig455_006785

Neo: -

Age: -

 Mlig455_006785 {REF} {Length: 787} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=67.2]} {Smed: dd_Smed_v6_17245_0_1, dd_Smed_v6_17245_0_1, [Score=55.5, Expect=9e-10]} {RNA1509_47645} {RNA1310_28371} {RNA815_4577.1}

Cumulative graph for MligTC455_50219

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.779 1.012 0.99998 1.00000
RegionR2 4.76 1.012 0.99958 1.00000
RegionR3 0.691 1.012 0.99963 1.00000
RegionR4 -1.832 1.012 1.00000 1.00000
RegionR5 -0.926 1.012 1.00000 1.00000
RegionR6 -0.841 1.012 0.99996 1.00000
RegionR7 -0.569 1.012 0.99980 1.00000
RegionR8 0.497 1.012 0.99984 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.494 1.012 0.99992 1.00000
RegenerationR2 -2.568 1.012 0.00218 0.07049
RegenerationR3 0.681 1.012 0.99976 1.00000
RegenerationR4 0.664 1.012 0.99978 1.00000
RegenerationR5 -0.267 1.012 0.99962 1.00000
RegenerationR6 0.739 1.012 0.99970 1.00000
RegenerationBL 2.044 1.012 0.99993 1.00000
RegenerationTP 1.944 1.012 0.99987 1.00000


Genes with expression patterns similar to MligTC455_50219

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_50219 35 0.73 Mlig455_006785

Neo: -

Age: -

 2 - - 1.000 - 1.000 - Mlig455_006785 {REF} {Length: 787} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=67.2]} {Smed: dd_Smed_v6_17245_0_1, dd_Smed_v6_17245_0_1, [Score=55.5, Expect=9e-10]} {RNA1509_47645} {RNA1310_28371} {RNA815_4577.1}
2. MligTC455_30572 88 1.82 Mlig455_009374, Mlig455_026650

Neo: -

Age: Down-Down-Down

 NYNRIN 1.738 - - 0.981 - 0.757 -

Mlig455_009374 {REF} {Length: 592} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=104.1]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=103.6]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=57.8]; Integrase zinc binding domain [PF17921.3, score=56.9]; Integrase core domain [PF00665.28, score=46.3]; gag-polyprotein putative aspartyl protease [PF13975.8, score=22.7]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=71.2, Expect=8e-12]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=72.0, Expect=3e-12]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=262, Expect=3e-73]} {RNA1509_8906} {RNA1310_1712.2} {RNA815_474.1}

Mlig455_026650 {REF} {Length: 3906} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=104.1]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=103.6]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=57.8]; Integrase zinc binding domain [PF17921.3, score=56.9]; Integrase core domain [PF00665.28, score=46.3]; gag-polyprotein putative aspartyl protease [PF13975.8, score=22.7]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=71.2, Expect=8e-12]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=72.0, Expect=3e-12]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=262, Expect=3e-73]} {RNA1509_8906} {RNA1310_1712.3} {RNA815_474.1}
3. MligTC455_39455 42 0.87 Mlig455_036460

Neo: -

Age: -

 1.72 - - 0.976 - 0.744 - Mlig455_036460 {REF} {Length: 1044} {NoTransDecoderORF} {RNA1509_44223} {RNA1310_54802} {RNA815_64986}
4. MligTC455_28723 57 1.19 Mlig455_038771

Neo: -

Age: -

 1.705 - - 0.950 - 0.755 - Mlig455_038771 {REF} {Length: 3385} {NoTransDecoderORF} {RNA1509_2485} {RNA1310_64926} {RNA815_131.1}
5. MligTC455_29454 50 1.05 Mlig455_065107

Neo: -

Age: -

 CHRNA10 1.691 - - 0.980 - 0.711 - Mlig455_065107 {REF} {Length: 3864} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=79.6]} {Human: ENSG00000129749, CHRNA10, cholinergic receptor nicotinic alpha 10 subunit, [Score=64.7, Expect=5e-11]; ENSG00000160716, CHRNB2, cholinergic receptor nicotinic beta 2 subunit, [Score=61.6, Expect=5e-10]} {Mouse: ENSMUSG00000032303, Chrna3, cholinergic receptor, nicotinic, alpha polypeptide 3, [Score=71.6, Expect=2e-13]} {Celegans: WBGene00000051, acr-12, AcetylCholine Receptor; Nicotinic acetylcholine receptor-like subunit ACR-12, [Score=56.2, Expect=1e-08]} {Smed: dd_Smed_v6_12146_0_1, dd_Smed_v6_12146_0_1, [Score=74.7, Expect=6e-15]} {RNA1509_57562} {RNA1310_27363} {RNA815_5685.1}
6. MligTC455_28285 101 2.1 Mlig455_001431

Neo: -

Age: -

 1.667 - - 0.951 - 0.716 - Mlig455_001431 {REF} {Length: 2576} {NoTransDecoderORF} {RNA1509_35077} {RNA1310_22744} {RNA815_9674}
7. MligTC455_12958 55 1.15 Mlig455_055683

Neo: -

Age: -

 0.99 - - 0.990 - - - Mlig455_055683 {REF} {Length: 1376}
8. MligTC455_10729 44 0.93 Mlig455_011434

Neo: -

Age: -

 0.987 - - 0.987 - - - Mlig455_011434 {REF} {Length: 429} {NoTransDecoderORF} {RNA1509_36541} {RNA1310_37624} {RNA815_20457.1}
9. MligTC455_11804 40 0.84 Mlig455_049994, Mlig455_050022

Neo: -

Age: Up-Down-Up

 0.987 - - 0.987 - - -

Mlig455_049994 {REF} {Length: 2541} {TRANSSPLICED} {RNA1310_33428} {RNA815_20155}

Mlig455_050022 {REF} {Length: 1815} {TRANSSPLICED} {RNA1310_33428} {RNA815_20155}
10. MligTC455_33449 53 1.11 Mlig455_048658, Mlig455_063410

Neo: -

Age: -

 0.984 - - 0.984 - - -

Mlig455_048658 {REF} {Length: 1769} {Mouse: ENSMUSG00000020396, Nefh, neurofilament, heavy polypeptide, [Score=86.3, Expect=5e-17]} {RNA1509_51537} {RNA1310_24973} {RNA815_7432}

Mlig455_063410 {REF} {Length: 2520} {Pfam: Sporozoite P67 surface antigen [PF05642.13, score=19.6]} {RNA1509_51537} {RNA1310_24973} {RNA815_7432}
11. MligTC455_03555 28 0.59 Mlig455_009266

Neo: -

Age: Up-Up-Down

 0.983 - - 0.983 - - - Mlig455_009266 {REF} {Length: 1235} {NoTransDecoderORF} {RNA1509_42100} {RNA1310_56786} {RNA815_61979}
12. MligTC455_27066 95 1.99 Mlig455_008802

Neo: -

Age: -

 0.982 - - 0.982 - - - Mlig455_008802 {REF} {Length: 1551} {NoTransDecoderORF} {RNA1509_44223} {RNA1310_54802} {RNA815_64986}
13. MligTC455_50410 31 0.64 Mlig455_020239

Neo: -

Age: -

 GRIA2 0.982 - - 0.982 - - - Mlig455_020239 {REF} {Length: 2096} {Pfam: Ligand-gated ion channel [PF00060.28, score=192.2]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=127.8]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=91.1]} {Human: ENSG00000120251, GRIA2, glutamate ionotropic receptor AMPA type subunit 2, [Score=513, Expect=7e-173]; ENSG00000152578, GRIA4, glutamate ionotropic receptor AMPA type subunit 4, [Score=496, Expect=3e-166]; ENSG00000155511, GRIA1, glutamate ionotropic receptor AMPA type subunit 1, [Score=494, Expect=8e-167]; ENSG00000125675, GRIA3, glutamate ionotropic receptor AMPA type subunit 3, [Score=491, Expect=1e-164]} {Mouse: ENSMUSG00000033981, Gria2, glutamate receptor, ionotropic, AMPA2 (alpha 2), [Score=507, Expect=4e-171]; ENSMUSG00000025892, Gria4, glutamate receptor, ionotropic, AMPA4 (alpha 4), [Score=497, Expect=4e-167]; ENSMUSG00000020524, Gria1, glutamate receptor, ionotropic, AMPA1 (alpha 1), [Score=494, Expect=1e-165]; ENSMUSG00000001986, Gria3, glutamate receptor, ionotropic, AMPA3 (alpha 3), [Score=491, Expect=1e-164]} {Dmel: FBgn0038837, CG3822, [Score=432, Expect=1e-142]} {Celegans: WBGene00001612, glr-1, Glutamate receptor 1, [Score=459, Expect=5e-152]} {Smed: dd_Smed_v6_7562_0_1, dd_Smed_v6_7562_0_1, [Score=528, Expect=2e-179]} {RNA1509_56139} {RNA1310_38868} {RNA815_32684}
14. MligTC455_50304 17 0.35 Mlig455_067422

Neo: -

Age: -

 0.981 - - 0.981 - - - Mlig455_067422 {REF} {Length: 751} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_51606} {RNA1310_82384} {RNA815_44872}
15. MligTC455_07516 112 2.34 Mlig455_060804

Neo: -

Age: -

 0.979 - - 0.979 - - - Mlig455_060804 {REF} {Length: 844} {Pfam: Presenilin [PF01080.19, score=19.5]} {RNA1509_21195} {RNA1310_23162} {RNA815_26275}
16. MligTC455_23129 58 1.21 Mlig455_019471

Neo: -

Age: -

Region-enriched R4: 3.358/0.03401

 0.979 - - 0.979 - - - Mlig455_019471 {REF} {Length: 1198} {Pfam: F5/8 type C domain [PF00754.27, score=36.6]; PAN domain [PF00024.28, score=22.7]} {RNA1310_33845.2} {RNA815_3664.1}
17. MligTC455_23130 57 1.18 Mlig455_066882

Neo: -

Age: -

 0.979 - - 0.979 - - - Mlig455_066882 {REF} {Length: 1287} {Pfam: F5/8 type C domain [PF00754.27, score=36.4]; PAN domain [PF00024.28, score=21.3]} {RNA1310_33845.2} {RNA815_3664.1}
18. MligTC455_43212 25 0.51 Mlig455_030578

Neo: -

Age: -

 ZNF16 0.976 - - 0.976 - - - Mlig455_030578 {REF} {Length: 1942} {TRANSSPLICED} {Pfam: C2H2-type zinc finger [PF13894.8, score=55.4]; Zinc finger, C2H2 type [PF00096.28, score=51.0]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=38.5]; Zinc-finger of C2H2 type [PF12874.9, score=34.0]; C2H2 type zinc-finger (2 copies) [PF12756.9, score=25.9]; Zinc-fingers and homeoboxes C2H2 finger domain [PF18387.3, score=20.8]; Zinc finger C2H2-type, 3 repeats [PF18868.3, score=19.4]} {Human: ENSG00000170631, ZNF16, zinc finger protein 16, [Score=84.7, Expect=6e-17]; ENSG00000178175, ZNF366, zinc finger protein 366, [Score=82.0, Expect=4e-16]; ENSG00000213973, ZNF99, zinc finger protein 99, [Score=81.6, Expect=7e-16]; ENSG00000196350, ZNF729, zinc finger protein 729, [Score=80.5, Expect=2e-15]; ENSG00000180787, ZFP3, ZFP3 zinc finger protein, [Score=80.5, Expect=9e-16]} {Mouse: ENSMUSG00000059897, Zfp930, zinc finger protein 930, [Score=83.2, Expect=7e-17]; ENSMUSG00000050919, Zfp366, zinc finger protein 366, [Score=80.1, Expect=1e-15]} {Dmel: FBgn0038550, CG17801, [Score=68.9, Expect=2e-12]} {Celegans: WBGene00012639, fezf-1, FEZ Family zinc finger protein, [Score=52.4, Expect=1e-07]} {Smed: dd_Smed_v6_11840_0_1, dd_Smed_v6_11840_0_1, [Score=57.8, Expect=4e-09]} {RNA1509_14767, RNA1509_19735} {RNA1310_5349, RNA1509_19735} {RNA1509_19735, RNA815_28876}
19. MligTC455_01014 50 1.04 Mlig455_061332

Neo: -

Age: -

 0.975 - - 0.975 - - - Mlig455_061332 {REF} {Length: 923} {RNA1310_87489}
20. MligTC455_53813 46 0.96 Mlig455_038036

Neo: -

Age: Down-Down-Up

 0.975 - - 0.975 - - - Mlig455_038036 {REF} {Length: 1511} {Smed: dd_Smed_v6_12148_0_3, dd_Smed_v6_12148_0_3, [Score=70.5, Expect=9e-14]} {RNA1310_21968} {RNA815_20437}
21. MligTC455_51760 18 0.38 Mlig455_051796

Neo: -

Age: -

 CNBD2 0.974 - - 0.974 - - - Mlig455_051796 {REF} {Length: 2614} {Pfam: Cyclic nucleotide-binding domain [PF00027.31, score=74.7]} {Human: ENSG00000149646, CNBD2, cyclic nucleotide binding domain containing 2, [Score=67.4, Expect=2e-11]; ENSG00000185532, PRKG1, protein kinase cGMP-dependent 1, [Score=64.3, Expect=4e-10]} {Mouse: ENSMUSG00000052920, Prkg1, protein kinase, cGMP-dependent, type I, [Score=64.7, Expect=2e-10]; ENSMUSG00000038085, Cnbd2, cyclic nucleotide binding domain containing 2, [Score=63.9, Expect=2e-10]} {Dmel: FBgn0259243, Pka-R1, Protein kinase, cAMP-dependent, regulatory subunit type 1, [Score=57.4, Expect=1e-08]} {Celegans: WBGene00015650, pkg-2, Protein Kinase, cGMP-dependent, [Score=61.2, Expect=1e-09]} {Smed: dd_Smed_v6_17565_0_1, dd_Smed_v6_17565_0_1, [Score=174, Expect=1e-46]} {RNA1310_33768} {RNA815_47620}
22. MligTC455_34815 30 0.63 Mlig455_020979

Neo: -

Age: -

 0.971 - - 0.971 - - - Mlig455_020979 {REF} {Length: 1394} {RNA1310_37266}
23. MligTC455_39002 35 0.72 Mlig455_041561

Neo: -

Age: -

 0.971 - - 0.971 - - - Mlig455_041561 {REF} {Length: 743} {NoTransDecoderORF} {RNA1509_13203} {RNA1310_24973} {RNA815_7432}
24. MligTC455_07736 28 0.58 Mlig455_008920

Neo: -

Age: -

 0.97 - - 0.970 - - - Mlig455_008920 {REF} {Length: 531} {NoTransDecoderORF} {RNA1509_59553} {RNA1310_6578} {RNA815_48322}
25. MligTC455_39001 28 0.57 Mlig455_027878

Neo: -

Age: -

 0.97 - - 0.970 - - - Mlig455_027878 {REF} {Length: 1017} {NoTransDecoderORF} {RNA1509_13203} {RNA1310_24973} {RNA815_7432}
26. MligTC455_11168 10 0.21 Mlig455_015184

Neo: -

Age: -

 0.965 - - 0.965 - - - Mlig455_015184 {REF} {Length: 1552} {NoTransDecoderORF} {RNA1509_44393} {RNA1310_60529.2} {RNA815_62333}
27. MligTC455_17210 20 0.42 Mlig455_055047

Neo: -

Age: -

 0.965 - - 0.965 - - - Mlig455_055047 {REF} {Length: 1907} {RNA1310_63298} {RNA815_53381}
28. MligTC455_25445 12 0.24 Mlig455_021534

Neo: -

Age: Up-Down-Up

 CACNA1D 0.965 - - 0.965 - - - Mlig455_021534 {REF} {Length: 4880} {Pfam: Ion transport protein [PF00520.33, score=359.2]; Voltage gated calcium channel IQ domain [PF08763.13, score=102.5]; Voltage-dependent L-type calcium channel, IQ-associated [PF16905.7, score=91.9]} {Human: ENSG00000157388, CACNA1D, calcium voltage-gated channel subunit alpha1 D, [Score=971, Expect=0.0]; ENSG00000081248, CACNA1S, calcium voltage-gated channel subunit alpha1 S, [Score=957, Expect=0.0]; ENSG00000151067, CACNA1C, calcium voltage-gated channel subunit alpha1 C, [Score=944, Expect=0.0]; ENSG00000285479, CACNA1C, calcium voltage-gated channel subunit alpha1 C, [Score=944, Expect=0.0]} {Mouse: ENSMUSG00000015968, Cacna1d, calcium channel, voltage-dependent, L type, alpha 1D subunit, [Score=971, Expect=0.0]; ENSMUSG00000051331, Cacna1c, calcium channel, voltage-dependent, L type, alpha 1C subunit, [Score=959, Expect=0.0]; ENSMUSG00000026407, Cacna1s, calcium channel, voltage-dependent, L type, alpha 1S subunit, [Score=958, Expect=0.0]} {Dmel: FBgn0001991, Ca-alpha1D, Ca[2+]-channel protein alpha[[1]] subunit D, [Score=989, Expect=0.0]} {Celegans: WBGene00001187, egl-19, Voltage-dependent L-type calcium channel subunit alpha, [Score=1053, Expect=0.0]} {Smed: dd_Smed_v6_8899_0_17, dd_Smed_v6_8899_0_17, [Score=1104, Expect=0.0]} {RNA1509_48072} {RNA1310_376.1} {RNA815_1126.1}
29. MligTC455_36703 21 0.43 Mlig455_032688

Neo: -

Age: -

 0.965 - - 0.965 - - - Mlig455_032688 {REF} {Length: 7822} {RNA1509_59817} {RNA1310_14959.1} {RNA815_22311}
30. MligTC455_51807 28 0.59 Mlig455_046394

Neo: -

Age: -

 GPSM2 0.964 - - 0.964 - - - Mlig455_046394 {REF} {Length: 3388} {Pfam: Tetratricopeptide repeat [PF13424.8, score=114.4]; Tetratricopeptide repeat [PF13176.8, score=96.0]; Tetratricopeptide repeat [PF00515.30, score=94.3]; GoLoco motif [PF02188.19, score=85.6]; Tetratricopeptide repeat [PF07719.19, score=55.0]; Tetratricopeptide repeat [PF13181.8, score=42.2]; Tetratricopeptide repeat [PF13374.8, score=32.8]; Rapsyn N-terminal myristoylation and linker region [PF10579.11, score=20.1]} {Human: ENSG00000121957, GPSM2, G protein signaling modulator 2, [RH, Score=542, Expect=0.0]} {Mouse: ENSMUSG00000027883, Gpsm2, G-protein signalling modulator 2 (AGS3-like, C. elegans), [RH, Score=532, Expect=1e-180]; ENSMUSG00000026930, Gpsm1, G-protein signalling modulator 1 (AGS3-like, C. elegans), [RH, Score=511, Expect=1e-172]} {Dmel: FBgn0040080, pins, partner of inscuteable, [RH, Score=530, Expect=2e-180]} {Celegans: WBGene00000092, ags-3, Activator of G protein Signalling, [RH, Score=266, Expect=7e-80]} {Smed: dd_Smed_v6_6548_1_1, dd_Smed_v6_6548_1_1, [RH, Score=477, Expect=1e-159]} {RNA1310_18538} {RNA815_41322}
31. MligTC455_09916 99 2.06 Mlig455_041793

Neo: -

Age: Up-Down-Up

 SLC24A3 0.962 - - 0.962 - - - Mlig455_041793 {REF} {Length: 2836} {Pfam: Sodium/calcium exchanger protein [PF01699.26, score=164.2]} {Human: ENSG00000185052, SLC24A3, solute carrier family 24 member 3, [Score=273, Expect=3e-81]; ENSG00000140090, SLC24A4, solute carrier family 24 member 4, [Score=272, Expect=4e-81]; ENSG00000155886, SLC24A2, solute carrier family 24 member 2, [Score=266, Expect=1e-78]} {Mouse: ENSMUSG00000037996, Slc24a2, solute carrier family 24 (sodium/potassium/calcium exchanger), member 2, [Score=271, Expect=7e-80]; ENSMUSG00000063873, Slc24a3, solute carrier family 24 (sodium/potassium/calcium exchanger), member 3, [Score=268, Expect=5e-80]; ENSMUSG00000041771, Slc24a4, solute carrier family 24 (sodium/potassium/calcium exchanger), member 4, [Score=267, Expect=1e-79]} {Dmel: FBgn0028704, Nckx30C, [Score=256, Expect=1e-73]} {Celegans: WBGene00003569, ncx-4, Na/Ca eXchangers, [Score=143, Expect=9e-36]} {Smed: dd_Smed_v6_9736_0_1, dd_Smed_v6_9736_0_1, [Score=285, Expect=1e-86]} {RNA1310_23810} {RNA815_17580}
32. MligTC455_25820 32 0.67 Mlig455_061208

Neo: -

Age: -

 0.96 - - 0.960 - - - Mlig455_061208 {REF} {Length: 1262} {Celegans: WBGene00018026, F35A5.4, [Score=48.1, Expect=1e-06]} {RNA1310_123558}
33. MligTC455_29940 77 1.61 Mlig455_034001

Neo: -

Age: -

 0.959 - - 0.959 - - - Mlig455_034001 {REF} {Length: 682} {RNA1310_20478} {RNA815_17869}
34. MligTC455_29941 78 1.63 Mlig455_060382

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.608

 EEFSEC 0.959 - - 0.959 - - - Mlig455_060382 {REF} {Length: 3426} {TRANSSPLICED} {Pfam: Elongation factor Tu GTP binding domain [PF00009.29, score=97.7]; ERCC4 domain [PF02732.17, score=62.1]; Elongation factor Tu domain 2 [PF03144.27, score=29.4]; 50S ribosome-binding GTPase [PF01926.25, score=26.4]; Signal recognition particle receptor beta subunit [PF09439.12, score=21.6]} {Human: ENSG00000132394, EEFSEC, eukaryotic elongation factor, selenocysteine-tRNA specific, [Score=427, Expect=9e-138]; ENSG00000284869, EEFSEC, eukaryotic elongation factor, selenocysteine-tRNA specific, [Score=427, Expect=9e-138]} {Mouse: ENSMUSG00000033216, Eefsec, eukaryotic elongation factor, selenocysteine-tRNA-specific, [Score=420, Expect=6e-136]} {Dmel: FBgn0034627, eEFSec, eukaryotic translation elongation factor, selenocysteine-specific, [Score=365, Expect=2e-115]} {Celegans: WBGene00008133, efsc-1, Eukaryotic Elongation Factor, SelenoCysteine-tRNA-specific, [Score=184, Expect=1e-49]} {Smed: dd_Smed_v6_4481_0_1, dd_Smed_v6_4481_0_1, [Score=388, Expect=1e-123]} {RNA1509_11359} {RNA1310_13242.1} {RNA815_31217}
35. MligTC455_20200 47 0.97 Mlig455_021962

Neo: -

Age: -

 KCNMA1 0.958 - - 0.958 - - - Mlig455_021962 {REF} {Length: 3749} {Pfam: Calcium-activated BK potassium channel alpha subunit [PF03493.20, score=76.1]; Ion channel [PF07885.18, score=61.3]; Ion transport protein [PF00520.33, score=34.6]; Ligand-gated ion channel [PF00060.28, score=23.9]} {Human: ENSG00000156113, KCNMA1, potassium calcium-activated channel subfamily M alpha 1, [Score=634, Expect=0.0]} {Mouse: ENSMUSG00000063142, Kcnma1, potassium large conductance calcium-activated channel, subfamily M, alpha member 1, [Score=628, Expect=0.0]} {Dmel: FBgn0003429, slo, slowpoke, [Score=449, Expect=8e-139]} {Celegans: WBGene00004830, slo-1, Calcium-activated potassium channel slo-1, [Score=444, Expect=2e-137]} {Smed: dd_Smed_v6_5509_0_1, dd_Smed_v6_5509_0_1, [Score=610, Expect=0.0]} {RNA1310_43306.1} {RNA815_38585}
36. MligTC455_33046 67 1.4 Mlig455_013269, Mlig455_032133, Mlig455_032300, Mlig455_054137, Mlig455_056421, Mlig455_065759

Neo: -

Age: Up-Down-Down

 0.958 - - 0.958 - - -

Mlig455_013269 {REF} {Length: 847} {Pfam: Recombination endonuclease VII [PF02945.17, score=31.7]} {Celegans: WBGene00016348, C33E10.6, [Score=80.9, Expect=4e-17]} {Smed: dd_Smed_v6_9974_1_5, dd_Smed_v6_9974_1_5, [Score=93.6, Expect=1e-21]} {RNA1509_39151} {RNA1310_2387} {RNA815_59939}

Mlig455_032133 {REF} {Length: 905} {Pfam: Recombination endonuclease VII [PF02945.17, score=32.0]; Borrelia P83/100 protein [PF05262.13, score=18.2]} {Celegans: WBGene00016348, C33E10.6, [Score=82.0, Expect=4e-17]} {Smed: dd_Smed_v6_9974_1_2, dd_Smed_v6_9974_1_2, [Score=95.9, Expect=6e-22]} {RNA1509_39151} {RNA1310_2387} {RNA815_59939}

Mlig455_032300 {REF} {Length: 1525} {Pfam: Borrelia P83/100 protein [PF05262.13, score=21.0]; Phosphatidylinositol-4-phosphate 5-Kinase [PF01504.20, score=19.4]; Contractile injection system tape measure protein [PF19268.1, score=18.6]} {RNA1509_13774} {RNA1310_41660} {RNA815_55778}

Mlig455_054137 {REF} {Length: 899} {Pfam: Recombination endonuclease VII [PF02945.17, score=31.1]} {Celegans: WBGene00016348, C33E10.6, [Score=80.1, Expect=1e-16]} {Smed: dd_Smed_v6_9974_1_2, dd_Smed_v6_9974_1_2, [Score=111, Expect=3e-27]} {RNA1509_39151} {RNA1310_2387} {RNA815_19338}

Mlig455_056421 {REF} {Length: 1944} {Pfam: Transcription factor IIA, alpha/beta subunit [PF03153.15, score=21.4]} {Smed: dd_Smed_v6_14361_0_10, dd_Smed_v6_14361_0_10, [Score=51.2, Expect=7e-09]} {RNA1509_21624} {RNA1310_2387} {RNA815_19338}

Mlig455_065759 {REF} {Length: 1453} {Pfam: Recombination endonuclease VII [PF02945.17, score=30.3]} {Celegans: WBGene00016348, C33E10.6, [Score=101, Expect=9e-23]} {Smed: dd_Smed_v6_9974_1_2, dd_Smed_v6_9974_1_2, [Score=142, Expect=2e-36]} {RNA1509_39151} {RNA1310_2387} {RNA815_19338}
37. MligTC455_53333 44 0.91 Mlig455_019019, Mlig455_055684

Neo: -

Age: Up-Down-Up

Region-enriched R4: 4.725/0.03950

 CHRNA7 0.958 - - 0.958 - - -

Mlig455_019019 {REF} {Length: 2615} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=154.0]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=93.9]} {Human: ENSG00000175344, CHRNA7, cholinergic receptor nicotinic alpha 7 subunit, [Score=210, Expect=2e-59]; ENSG00000274542, AC243734.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=208, Expect=5e-59]; ENSG00000282088, AC254952.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=207, Expect=8e-59]; ENSG00000120903, CHRNA2, cholinergic receptor nicotinic alpha 2 subunit, [Score=206, Expect=3e-58]} {Mouse: ENSMUSG00000030525, Chrna7, cholinergic receptor, nicotinic, alpha polypeptide 7, [Score=209, Expect=1e-59]; ENSMUSG00000032303, Chrna3, cholinergic receptor, nicotinic, alpha polypeptide 3, [Score=205, Expect=3e-58]} {Dmel: FBgn0000039, nAChRalpha2, nicotinic Acetylcholine Receptor alpha2, [Score=221, Expect=3e-63]} {Celegans: WBGene00006774, unc-38, Acetylcholine receptor subunit alpha-type unc-38, [Score=190, Expect=7e-53]} {Smed: dd_Smed_v6_9503_0_1, dd_Smed_v6_9503_0_1, [Score=426, Expect=5e-142]} {RNA1509_56207} {RNA1310_26355} {RNA815_26644}

Mlig455_055684 {REF} {Length: 2604} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=154.0]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=94.7]} {Human: ENSG00000175344, CHRNA7, cholinergic receptor nicotinic alpha 7 subunit, [Score=211, Expect=9e-60]; ENSG00000274542, AC243734.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=209, Expect=3e-59]; ENSG00000282088, AC254952.1, cholinergic receptor nicotinic alpha 7 subunit, [Score=208, Expect=5e-59]; ENSG00000120903, CHRNA2, cholinergic receptor nicotinic alpha 2 subunit, [Score=207, Expect=7e-59]} {Mouse: ENSMUSG00000030525, Chrna7, cholinergic receptor, nicotinic, alpha polypeptide 7, [Score=209, Expect=9e-60]; ENSMUSG00000032303, Chrna3, cholinergic receptor, nicotinic, alpha polypeptide 3, [Score=204, Expect=1e-57]} {Dmel: FBgn0000039, nAChRalpha2, nicotinic Acetylcholine Receptor alpha2, [Score=222, Expect=1e-63]} {Celegans: WBGene00006774, unc-38, Acetylcholine receptor subunit alpha-type unc-38, [Score=190, Expect=6e-53]} {Smed: dd_Smed_v6_9503_0_1, dd_Smed_v6_9503_0_1, [Score=427, Expect=3e-142]} {RNA1509_56207} {RNA1310_26355} {RNA815_26644}
38. MligTC455_39719 44 0.92 Mlig455_063602

Neo: -

Age: -

 MPDZ 0.955 - - 0.955 - - - Mlig455_063602 {REF} {Length: 2307} {Pfam: PDZ domain [PF00595.26, score=187.6]; PDZ domain [PF17820.3, score=85.4]; PDZ domain [PF13180.8, score=85.1]} {Human: ENSG00000107186, MPDZ, multiple PDZ domain crumbs cell polarity complex component, [Score=244, Expect=9e-70]} {Mouse: ENSMUSG00000028402, Mpdz, multiple PDZ domain protein, [Score=237, Expect=7e-67]} {Dmel: FBgn0263289, scrib, scribbled, [Score=88.6, Expect=6e-18]} {Celegans: WBGene00003404, mpz-1, Multiple PDZ domain protein, [Score=137, Expect=7e-35]} {Smed: dd_Smed_v6_4520_0_1, dd_Smed_v6_4520_0_1, [Score=147, Expect=2e-37]} {RNA1310_8275.3} {RNA815_16615}
39. MligTC455_29632 21 0.44 Mlig455_054227

Neo: -

Age: Down-Up-Down

 ANKRD50 0.953 - - 0.953 - - - Mlig455_054227 {REF} {Length: 5889} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=128.1]; Ankyrin repeats (many copies) [PF13637.8, score=114.1]; Ankyrin repeat [PF13606.8, score=90.5]; Ankyrin repeats (many copies) [PF13857.8, score=86.8]; Ankyrin repeat [PF00023.32, score=45.5]; Mab-21 protein [PF03281.16, score=31.7]} {Human: ENSG00000151458, ANKRD50, ankyrin repeat domain 50, [Score=94.7, Expect=9e-19]} {Mouse: ENSMUSG00000044864, Ankrd50, ankyrin repeat domain 50, [Score=95.9, Expect=2e-19]} {Dmel: FBgn0041096, rols, rolling pebbles, [Score=82.0, Expect=3e-15]} {Celegans: WBGene00006616, trp-4, TRP (Transient receptor potential) channel family, [Score=69.7, Expect=2e-11]} {Smed: dd_Smed_v6_6779_0_1, dd_Smed_v6_6779_0_1, [Score=83.2, Expect=9e-16]} {RNA1509_24245, RNA1509_27730, RNA1509_49510, RNA1509_49520} {RNA1310_4721, RNA1509_24245, RNA1509_49510, RNA1509_49520} {RNA1509_24245, RNA1509_49510, RNA1509_49520, RNA815_2426.1}
40. MligTC455_49922 36 0.76 Mlig455_049338

Neo: -

Age: Down-Down-Up

Region-enriched R2: 7.622/0.00496

 0.953 - - 0.953 - - - Mlig455_049338 {REF} {Length: 971} {RNA1310_37449} {RNA815_3585}
41. MligTC455_19187 156 3.26 Mlig455_018418

Neo: -

Age: -

Region-enriched R2: 2.105/0.03594

 NRXN1 0.951 - - 0.951 - - - Mlig455_018418 {REF} {Length: 6075} {Pfam: Laminin G domain [PF02210.26, score=290.6]; Laminin G domain [PF00054.25, score=213.6]; Syndecan domain [PF01034.22, score=25.6]; EGF-like domain [PF00008.29, score=22.7]} {Human: ENSG00000179915, NRXN1, neurexin 1, [RH, Score=396, Expect=2e-114]} {Mouse: ENSMUSG00000024109, Nrxn1, neurexin I, [Score=408, Expect=3e-119]} {Dmel: FBgn0038975, Nrx-1, Neurexin 1, [Score=315, Expect=2e-87]} {Celegans: WBGene00007799, nrx-1, NRX-1 beta isoform; NeuReXin related, [Score=119, Expect=9e-27]} {Smed: dd_Smed_v6_13697_0_1, dd_Smed_v6_13697_0_1, [RH, Score=429, Expect=2e-128]} {RNA1509_34878} {RNA1310_1222.1} {RNA815_16735}
42. MligTC455_33725 46 0.96 Mlig455_059862

Neo: -

Age: -

 0.951 - - 0.951 - - - Mlig455_059862 {REF} {Length: 2526} {tRNA: Asp(GTC), score=67.3} {RNA1310_22634} {RNA815_27671}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA