M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_51479

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_51479 285 5.94 Mlig455_015075

Neo: -

Age: -

 Mlig455_015075 {REF} {Length: 2603} {NoTransDecoderORF} {RNA1509_22350, RNA1509_37697} {RNA1310_36377, RNA1509_22350, RNA1509_37697} {RNA1509_22350, RNA1509_37697, RNA815_27320}

Cumulative graph for MligTC455_51479

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.719 2.935 0.78766 1.00000
RegionR2 -0.006 2.935 0.98913 1.00000
RegionR3 -0.266 2.935 0.82697 1.00000
RegionR4 -2.464 2.935 0.09103 0.28863
RegionR5 0.892 2.935 0.41014 0.76902
RegionR6 0.165 2.935 0.89853 1.00000
RegionR7 1.038 2.935 0.40604 1.00000
RegionR8 1.36 2.935 0.40797 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.18 2.935 0.95406 1.00000
RegenerationR2 0.397 2.935 0.77388 0.98129
RegenerationR3 0.678 2.935 0.65665 0.93181
RegenerationR4 1.767 2.935 0.23111 0.67967
RegenerationR5 -0.33 2.935 0.80716 0.99038
RegenerationR6 0.247 2.935 0.87708 1.00000
RegenerationBL 1.318 2.935 0.33109 0.69737
RegenerationTP 1.118 2.935 0.44444 0.86363


Genes with expression patterns similar to MligTC455_51479

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_51479 285 5.94 Mlig455_015075

Neo: -

Age: -

 5 1.000 - 1.000 1.000 1.000 1.000 Mlig455_015075 {REF} {Length: 2603} {NoTransDecoderORF} {RNA1509_22350, RNA1509_37697} {RNA1310_36377, RNA1509_22350, RNA1509_37697} {RNA1509_22350, RNA1509_37697, RNA815_27320}
2. MligTC455_51480 270 5.62 Mlig455_027153

Neo: -

Age: -

 2.723 0.988 - 0.743 - 0.992 - Mlig455_027153 {REF} {Length: 479} {NoTransDecoderORF} {RNA1509_37697} {RNA1310_36377} {RNA815_27320}
3. MligTC455_01032 21 0.43 Mlig455_006069

Neo: -

Age: -

 1.826 - - - 0.957 0.869 - Mlig455_006069 {REF} {Length: 2849} {RNA1509_41972} {RNA1310_1374.1} {RNA815_21848}
4. MligTC455_47336 188 3.92 Mlig455_012695

Neo: Irradiation

Age: -

 PPIL4 1.759 0.798 - - 0.961 - - Mlig455_012695 {REF} {Length: 7286} {TRANSSPLICED} {Pfam: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD [PF00160.23, score=127.3]; DEAD/DEAH box helicase [PF00270.31, score=67.8]; Helicase conserved C-terminal domain [PF00271.33, score=65.7]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=53.4]} {Human: ENSG00000131013, PPIL4, peptidylprolyl isomerase like 4, [RH, Score=432, Expect=3e-140]} {Mouse: ENSMUSG00000015757, Ppil4, peptidylprolyl isomerase (cyclophilin)-like 4, [RH, Score=431, Expect=3e-140]} {Dmel: FBgn0027617, CG5808, [Score=431, Expect=7e-138]} {Celegans: WBGene00000890, sig-7, Peptidyl-prolyl cis-trans isomerase sig-7, [RH, Score=429, Expect=1e-140]} {Smed: dd_Smed_v6_5960_0_1, dd_Smed_v6_5960_0_1, [RH, Score=473, Expect=8e-157]} {RNA1509_23861} {RNA1310_14777, RNA1509_23861} {RNA1509_23861, RNA815_14242}
5. MligTC455_28700 84 1.76 Mlig455_062682

Neo: -

Age: -

 CHERP 1.67 - - - 0.970 - 0.700 Mlig455_062682 {REF} {Length: 3833} {TRANSSPLICED} {Pfam: CID domain [PF04818.15, score=81.7]} {Human: ENSG00000085872, CHERP, calcium homeostasis endoplasmic reticulum protein, [RH, Score=140, Expect=2e-33]} {Mouse: ENSMUSG00000052488, Cherp, calcium homeostasis endoplasmic reticulum protein, [RH, Score=140, Expect=1e-33]} {Dmel: FBgn0261872, scaf6, SR-related CTD associated factor 6, [RH, Score=162, Expect=1e-40]} {Celegans: WBGene00006442, tag-65, SR-related CTD associated factor 6, [Score=89.7, Expect=3e-18]} {Smed: dd_Smed_v6_4684_0_1, dd_Smed_v6_4684_0_1, [RH, Score=193, Expect=4e-51]} {RNA1509_37244} {RNA1310_7506} {RNA815_19825}
6. MligTC455_41483 50 1.05 Mlig455_006754

Neo: -

Age: -

 0.982 - - - - 0.982 - Mlig455_006754 {REF} {Length: 3493} {RNA1310_64559} {RNA815_57833}
7. MligTC455_33069 146 3.04 Mlig455_011944

Neo: -

Age: Down-Up-Down

 0.972 - - - - 0.972 - Mlig455_011944 {REF} {Length: 1422} {TRANSSPLICED} {RNA1509_20571, RNA1509_24355, RNA1509_56123} {RNA1310_38731, RNA1509_24355, RNA1509_56123} {RNA1509_24355, RNA1509_56123, RNA815_19943}
8. MligTC455_28089 22 0.46 Mlig455_016453

Neo: -

Age: -

 ZNF595 0.969 - - - 0.969 - - Mlig455_016453 {REF} {Length: 4711} {TRANSSPLICED} {Pfam: Zinc-finger double domain [PF13465.8, score=90.9]; Zinc finger, C2H2 type [PF00096.28, score=74.7]; C2H2-type zinc finger [PF13894.8, score=47.6]; Transcription elongation factor Elf1 like [PF05129.15, score=18.7]} {Human: ENSG00000272602, ZNF595, zinc finger protein 595, [Score=145, Expect=4e-39]; ENSG00000204611, ZNF616, zinc finger protein 616, [Score=144, Expect=1e-37]; ENSG00000267041, ZNF850, zinc finger protein 850, [Score=144, Expect=2e-37]; ENSG00000278318, ZNF229, zinc finger protein 229, [Score=144, Expect=2e-37]; ENSG00000198440, ZNF583, zinc finger protein 583, [Score=143, Expect=1e-37]; ENSG00000198939, ZFP2, ZFP2 zinc finger protein, [Score=141, Expect=2e-37]; ENSG00000187187, ZNF546, zinc finger protein 546, [Score=141, Expect=2e-36]; ENSG00000281526, ZNF546, zinc finger protein 546, [Score=141, Expect=2e-36]; ENSG00000182903, ZNF721, zinc finger protein 721, [Score=140, Expect=4e-36]; ENSG00000198538, ZNF28, zinc finger protein 28, [Score=140, Expect=4e-36]; ENSG00000197050, ZNF420, zinc finger protein 420, [Score=139, Expect=6e-36]; ENSG00000131115, ZNF227, zinc finger protein 227, [Score=139, Expect=1e-35]; ENSG00000197951, ZNF71, zinc finger protein 71, [Score=139, Expect=1e-36]; ENSG00000197566, ZNF624, zinc finger protein 624, [Score=139, Expect=1e-35]; ENSG00000182318, ZSCAN22, zinc finger and SCAN domain containing 22, [Score=139, Expect=2e-36]; ENSG00000181450, ZNF678, zinc finger protein 678, [Score=139, Expect=3e-36]} {Mouse: ENSMUSG00000096916, Zfp850, zinc finger protein 850, [Score=147, Expect=6e-39]; ENSMUSG00000078877, Gm14295, predicted gene 14295, [Score=146, Expect=3e-38]; ENSMUSG00000072763, 5430403G16Rik, RIKEN cDNA 5430403G16 gene, [Score=144, Expect=1e-37]; ENSMUSG00000102030, Gm29106, predicted gene 29106, [Score=144, Expect=1e-37]; ENSMUSG00000078881, Gm14434, predicted gene 14434, [Score=142, Expect=7e-38]; ENSMUSG00000078880, Gm14308, predicted gene 14308, [Score=142, Expect=7e-38]; ENSMUSG00000078886, Gm2026, predicted gene 2026, [Score=142, Expect=7e-38]; ENSMUSG00000094475, Gm11007, predicted gene 11007, [Score=142, Expect=6e-38]; ENSMUSG00000078897, Gm4724, predicted gene 4724, [Score=142, Expect=7e-38]; ENSMUSG00000094932, Gm2007, predicted gene 2007, [Score=142, Expect=6e-38]; ENSMUSG00000055305, Zfp93, zinc finger protein 93, [Score=142, Expect=3e-37]; ENSMUSG00000078899, Gm4631, predicted gene 4631, [Score=142, Expect=6e-38]; ENSMUSG00000069476, Zfp616, zinc finger protein 616, [Score=141, Expect=2e-36]; ENSMUSG00000078878, Gm14305, predicted gene 14305, [Score=140, Expect=3e-37]; ENSMUSG00000063108, Zfp26, zinc finger protein 26, [Score=140, Expect=4e-36]; ENSMUSG00000058883, Zfp708, zinc finger protein 708, [Score=140, Expect=1e-36]} {Dmel: FBgn0001325, Kr, Kruppel, [Score=123, Expect=4e-31]} {Celegans: WBGene00003909, pag-3, Zinc finger protein PAG-3, [Score=120, Expect=3e-31]} {Smed: dd_Smed_v6_36618_0_1, dd_Smed_v6_36618_0_1, [Score=106, Expect=3e-27]} {RNA1509_30169, RNA1509_38205, RNA1509_47022, RNA1509_8819} {RNA1310_8762, RNA1509_38205, RNA1509_47022, RNA1509_8819} {RNA1509_38205, RNA1509_47022, RNA1509_8819, RNA815_3859}
9. MligTC455_42296 21 0.44 Mlig455_053339

Neo: -

Age: -

 PIP5K1A 0.963 - - - - 0.963 - Mlig455_053339 {REF} {Length: 2073} {TRANSSPLICED} {Pfam: Phosphatidylinositol-4-phosphate 5-Kinase [PF01504.20, score=268.3]} {Human: ENSG00000143398, PIP5K1A, phosphatidylinositol-4-phosphate 5-kinase type 1 alpha, [RH, Score=417, Expect=9e-140]} {Mouse: ENSMUSG00000034902, Pip5k1c, phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma, [RH, Score=409, Expect=5e-136]} {Dmel: FBgn0016984, sktl, skittles, [Score=435, Expect=2e-144]} {Celegans: WBGene00004087, ppk-1, PIP Kinase, [Score=409, Expect=1e-136]} {Smed: dd_Smed_v6_7632_0_3, dd_Smed_v6_7632_0_3, [Score=414, Expect=8e-140]} {RNA1509_26123} {RNA1310_25286.1} {RNA815_4999.1}
10. MligTC455_33166 57 1.2 Mlig455_059521

Neo: -

Age: Down-Up-Down

 0.962 - - - - - 0.962 Mlig455_059521 {REF} {Length: 812} {NoTransDecoderORF} {RNA1509_31268} {RNA1310_8042.1} {RNA815_21467}
11. MligTC455_28871 42 0.88 Mlig455_014977, Mlig455_045105, Mlig455_070240

Neo: Irradiation

Age: Up-Down-Down, logFC(26M/2M)=0.436

 NYNRIN 0.959 - - - - 0.959 -

Mlig455_014977 {REF} {Length: 5538} {Smed: dd_Smed_v6_73290_0_1, dd_Smed_v6_73290_0_1, [Score=43.5, Expect=4e-07]} {RNA1509_43263} {RNA1310_12394.1} {RNA815_22479}

Mlig455_045105 {REF} {Length: 712} {Pfam: Integrase core domain [PF00665.28, score=48.2]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=48.5, Expect=1e-05]} {Smed: dd_Smed_v6_3718_0_1, dd_Smed_v6_3718_0_1, [Score=66.2, Expect=3e-12]} {RNA1509_43263} {RNA1310_12394.2} {RNA815_26248.2}

Mlig455_070240 {REF} {Length: 8589} {TRANSSPLICED} {Smed: dd_Smed_v6_73290_0_1, dd_Smed_v6_73290_0_1, [Score=43.5, Expect=4e-07]} {RNA1509_43263} {RNA1310_12394.1, RNA1509_43263} {RNA1509_43263, RNA815_166}
12. MligTC455_09826 156 3.26 Mlig455_056834

Neo: -

Age: Down-Up-Down

 0.957 - - - - - 0.957 Mlig455_056834 {REF} {Length: 1255} {TRANSSPLICED} {RNA1310_44102} {RNA815_12654}
13. MligTC455_12635 46 0.96 Mlig455_035482

Neo: -

Age: -

 0.957 - - - 0.957 - - Mlig455_035482 {REF} {Length: 1106} {NoTransDecoderORF} {RNA1509_12003} {RNA1310_15400}
14. MligTC455_39406 44 0.92 Mlig455_026121

Neo: -

Age: Up-Down-Down

 RBMS1 0.957 - - - 0.957 - - Mlig455_026121 {REF} {Length: 2550} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=40.0]} {Human: ENSG00000153250, RBMS1, RNA binding motif single stranded interacting protein 1, [Score=106, Expect=1e-24]; ENSG00000144642, RBMS3, RNA binding motif single stranded interacting protein 3, [Score=102, Expect=5e-23]; ENSG00000076067, RBMS2, RNA binding motif single stranded interacting protein 2, [Score=102, Expect=4e-23]} {Mouse: ENSMUSG00000026970, Rbms1, RNA binding motif, single stranded interacting protein 1, [Score=110, Expect=4e-26]} {Dmel: FBgn0052423, shep, alan shepard, [Score=84.7, Expect=3e-17]} {Celegans: WBGene00006331, sup-26, SUPpressor, [Score=100, Expect=9e-23]} {Smed: dd_Smed_v6_3832_0_1, dd_Smed_v6_3832_0_1, [RH, Score=105, Expect=9e-25]} {RNA1310_39053} {RNA815_20087}
15. MligTC455_49710 69 1.45 Mlig455_064824

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_064824 {REF} {Length: 1191} {NoTransDecoderORF} {RNA1509_51983} {RNA1310_69193} {RNA815_28501}
16. MligTC455_11681 9 0.19 Mlig455_022655

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_022655 {REF} {Length: 693} {NoTransDecoderORF} {RNA1310_74751.2}
17. MligTC455_22257 24 0.49 Mlig455_002961

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_002961 {REF} {Length: 1429} {NoTransDecoderORF} {RNA1509_19236} {RNA1310_28041.2} {RNA815_50832.1}
18. MligTC455_31323 119 2.48 Mlig455_064684

Neo: -

Age: -

 ACP2 0.953 - - - - 0.953 - Mlig455_064684 {REF} {Length: 3113} {TRANSSPLICED} {Pfam: Histidine phosphatase superfamily (branch 2) [PF00328.24, score=78.1]} {Human: ENSG00000134575, ACP2, acid phosphatase 2, lysosomal, [Score=179, Expect=4e-51]} {Mouse: ENSMUSG00000002103, Acp2, acid phosphatase 2, lysosomal, [Score=185, Expect=3e-53]} {Dmel: FBgn0000032, Acph-1, Acid phosphatase 1, [Score=173, Expect=6e-49]} {Celegans: WBGene00015161, pho-5, Putative acid phosphatase 5, [RH, Score=169, Expect=9e-48]} {Smed: dd_Smed_v6_11594_0_1, dd_Smed_v6_11594_0_1, [RH, Score=179, Expect=6e-51]} {RNA1509_29407} {RNA1310_15922, RNA1509_29407} {RNA1509_29407, RNA815_8033}
19. MligTC455_33068 138 2.87 Mlig455_011936

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_011936 {REF} {Length: 1402} {TRANSSPLICED} {RNA1509_20571} {RNA1310_38731} {RNA815_19943}
20. MligTC455_51690 58 1.2 Mlig455_031667

Neo: -

Age: -

 CNKSR3 0.953 - - - 0.953 - - Mlig455_031667 {REF} {Length: 3455} {Pfam: SAM domain (Sterile alpha motif) [PF00536.32, score=34.6]; SAM domain (Sterile alpha motif) [PF07647.19, score=33.9]; Connector enhancer of kinase suppressor of ras [PF10534.11, score=24.4]; PDZ domain [PF00595.26, score=19.3]} {Human: ENSG00000153721, CNKSR3, CNKSR family member 3, [Score=79.0, Expect=7e-15]} {Mouse: ENSMUSG00000015202, Cnksr3, Cnksr family member 3, [Score=79.0, Expect=4e-15]} {RNA1509_17630} {RNA1310_4367.2} {RNA815_23045.1}
21. MligTC455_13251 89 1.86 Mlig455_005191

Neo: -

Age: logFC(26M/2M)=-0.503

 0.951 - - - 0.951 - - Mlig455_005191 {REF} {Length: 651} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=36.6]} {Mouse: ENSMUSG00000066279, Chrna10, cholinergic receptor, nicotinic, alpha polypeptide 10, [Score=41.2, Expect=9e-06]} {RNA1509_40279} {RNA1310_35227} {RNA815_50075}
22. MligTC455_13797 16 0.33 Mlig455_032687

Neo: -

Age: -

Region-enriched R4: 5.327/0.01197

 0.95 - - - 0.950 - - Mlig455_032687 {REF} {Length: 629} {NoTransDecoderORF} {RNA1310_93307.2}
23. MligTC455_42364 9 0.2 Mlig455_007252

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_007252 {REF} {Length: 523} {RNA1509_2515} {RNA1310_11307} {RNA815_3258.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA