TomoSeq data search

Data search

Results for MligTC455_53886

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_53886

123

2.56

Mlig455_068271

Neo: -

Age: Down-Up-Down

STARD10

Mlig455_068271 {REF} {Length: 2322} {TRANSSPLICED} {Pfam: START domain [PF01852.21, score=105.5]} {Human: ENSG00000214530, STARD10, StAR related lipid transfer domain containing 10, [Score=206, Expect=6e-65]} {Mouse: ENSMUSG00000030688, Stard10, START domain containing 10, [Score=207, Expect=9e-66]} {Celegans: WBGene00012127, T28D6.7, [RH, Score=216, Expect=4e-69]} {Smed: dd_Smed_v6_498_0_1, dd_Smed_v6_498_0_1, [RH, Score=294, Expect=4e-100]} {RNA1509_25193} {RNA1310_26702.1} {RNA815_13572.1}

Cumulative graph for MligTC455_53886

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	0.913	1.946	0.58078	1.00000
RegionR2	1.241	1.946	0.17141	0.51793
RegionR3	-0.436	1.946	0.58247	1.00000
RegionR4	-1.114	1.946	0.23547	0.52980
RegionR5	-0.42	1.946	0.53378	0.89658
RegionR6	-0.332	1.946	0.66144	1.00000
RegionR7	-0.96	1.946	0.36570	1.00000
RegionR8	1.109	1.946	0.25559	0.87543

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-4.881	1.946	0.38943	1.00000
RegenerationR2	-0.456	1.946	0.58902	0.91074
RegenerationR3	1.031	1.946	0.28633	0.71831
RegenerationR4	0.241	1.946	0.82909	0.99723
RegenerationR5	0.327	1.946	0.68984	0.94784
RegenerationR6	-1.462	1.946	0.23835	0.58595
RegenerationBL	0.626	1.946	0.59740	0.94516
RegenerationTP	0.525	1.946	0.64312	0.98516

Genes with expression patterns similar to MligTC455_53886

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_53886	123	2.56	Mlig455_068271	Neo: - Age: Down-Up-Down	STARD10	5	1.000	1.000	1.000	1.000	-	1.000	Mlig455_068271 {REF} {Length: 2322} {TRANSSPLICED} {Pfam: START domain [PF01852.21, score=105.5]} {Human: ENSG00000214530, STARD10, StAR related lipid transfer domain containing 10, [Score=206, Expect=6e-65]} {Mouse: ENSMUSG00000030688, Stard10, START domain containing 10, [Score=207, Expect=9e-66]} {Celegans: WBGene00012127, T28D6.7, [RH, Score=216, Expect=4e-69]} {Smed: dd_Smed_v6_498_0_1, dd_Smed_v6_498_0_1, [RH, Score=294, Expect=4e-100]} {RNA1509_25193} {RNA1310_26702.1} {RNA815_13572.1}
2.	MligTC455_18485	31	0.64	Mlig455_025676	Neo: - Age: logFC(26M/2M)=-0.535	BEST3	1.823	-	-	0.974	0.849	-	-	Mlig455_025676 {REF} {Length: 2042} {Pfam: Bestrophin, RFP-TM, chloride channel [PF01062.23, score=192.0]} {Human: ENSG00000127325, BEST3, bestrophin 3, [Score=130, Expect=4e-31]} {Mouse: ENSMUSG00000037418, Best1, bestrophin 1, [Score=128, Expect=7e-31]; ENSMUSG00000020169, Best3, bestrophin 3, [Score=127, Expect=2e-30]} {Dmel: FBgn0040238, Best1, Bestrophin 1, [Score=122, Expect=6e-29]} {Celegans: WBGene00009340, best-14, Bestrophin homolog 14, [Score=110, Expect=7e-26]} {Smed: dd_Smed_v6_3859_0_1, dd_Smed_v6_3859_0_1, [Score=236, Expect=9e-71]} {RNA1509_5589} {RNA1310_3796.1} {RNA815_2846.1}
3.	MligTC455_21785	107	2.24	Mlig455_005064	Neo: - Age: Up-Down-Up, logFC(26M/2M)=-0.389	KRIT1	0.985	-	-	0.985	-	-	-	Mlig455_005064 {REF} {Length: 4037} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=53.0]; Ankyrin repeats (many copies) [PF13857.8, score=50.3]; Ankyrin repeats (many copies) [PF13637.8, score=40.3]; Ankyrin repeat [PF00023.32, score=35.8]; Ankyrin repeat [PF13606.8, score=32.7]; FERM central domain [PF00373.20, score=26.3]} {Human: ENSG00000001631, KRIT1, KRIT1, ankyrin repeat containing, [RH, Score=218, Expect=2e-60]; ENSG00000285953, AC000120.3, novel protein, [RH, Score=209, Expect=2e-57]} {Mouse: ENSMUSG00000000600, Krit1, KRIT1, ankyrin repeat containing, [RH, Score=207, Expect=1e-56]} {Dmel: FBgn0029137, Patsas, [Score=51.6, Expect=2e-06]} {Celegans: WBGene00013955, kri-1, KRIT 1 (Krev interaction trapped/cerebral cavernous malformation 1) homolog; Krev interaction trapped/cerebral cavernous malformation 1 isoform a, [RH, Score=85.9, Expect=5e-17]} {Smed: dd_Smed_v6_10935_0_1, dd_Smed_v6_10935_0_1, [RH, Score=137, Expect=3e-33]} {RNA1509_17918} {RNA1310_6799, RNA1509_17918} {RNA1509_17918, RNA815_1724}
4.	MligTC455_32224	245	5.1	Mlig455_048779	Neo: - Age: -	EFCAB7	0.978	-	-	0.978	-	-	-	Mlig455_048779 {REF} {Length: 2643} {TRANSSPLICED} {Pfam: EF hand [PF00036.34, score=71.0]; EF-hand domain pair [PF13499.8, score=67.2]; EF-hand domain [PF13405.8, score=63.7]; EF hand [PF13202.8, score=63.0]; EF-hand domain pair [PF13833.8, score=45.9]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=24.0]; EF hand [PF14788.8, score=19.7]} {Human: ENSG00000203965, EFCAB7, EF-hand calcium binding domain 7, [Score=153, Expect=6e-39]} {Mouse: ENSMUSG00000091898, Tnnc1, troponin C, cardiac/slow skeletal, [Score=72.8, Expect=1e-14]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=57.0, Expect=2e-09]} {Celegans: WBGene00006861, cal-5, CALmodulin related genes, [Score=57.8, Expect=1e-09]} {Smed: dd_Smed_v6_12168_0_1, dd_Smed_v6_12168_0_1, [Score=186, Expect=4e-51]} {RNA1509_55933} {RNA1310_1543.2, RNA1509_55933} {RNA1509_55933, RNA815_2194}
5.	MligTC455_08846	13	0.26	Mlig455_051270	Neo: - Age: -		0.968	-	-	0.968	-	-	-	Mlig455_051270 {REF} {Length: 1527} {NoTransDecoderORF} {RNA1509_25886} {RNA1310_73804} {RNA815_59042}
6.	MligTC455_13266	49	1.03	Mlig455_027179	Neo: - Age: Down-Up-Down		0.96	-	-	0.960	-	-	-	Mlig455_027179 {REF} {Length: 704} {RNA1310_72558} {RNA815_28618}
7.	MligTC455_28315	110	2.29	Mlig455_030359	Neo: - Age: -		0.955	-	-	0.955	-	-	-	Mlig455_030359 {REF} {Length: 735} {NoTransDecoderORF} {RNA1509_25022} {RNA1310_71196} {RNA815_23623}
8.	MligTC455_37450	79	1.64	Mlig455_046274	Neo: - Age: Down-Down-Up		0.955	-	-	-	0.955	-	-	Mlig455_046274 {REF} {Length: 3846} {TRANSSPLICED} {Pfam: Tetratricopeptide repeat [PF07719.19, score=22.6]} {RNA1509_23513} {RNA1310_2903.2} {RNA815_5096}

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