M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_55327

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_55327 12 0.26 Mlig455_035498

Neo: -

Age: -

 Mlig455_035498 {REF} {Length: 3149} {TRANSSPLICED} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=127.7]; Endonuclease-reverse transcriptase [PF14529.8, score=75.9]} {RNA1509_32599} {RNA1310_1123.1} {RNA815_252.1}

Cumulative graph for MligTC455_55327

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_55327

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_55327 12 0.26 Mlig455_035498

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_035498 {REF} {Length: 3149} {TRANSSPLICED} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=127.7]; Endonuclease-reverse transcriptase [PF14529.8, score=75.9]} {RNA1509_32599} {RNA1310_1123.1} {RNA815_252.1}
2. MligTC455_04782 14 0.28 Mlig455_042726

Neo: -

Age: -

 0.992 - - - - 0.992 - Mlig455_042726 {REF} {Length: 2882} {TRANSSPLICED} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=117.5]; Endonuclease-reverse transcriptase [PF14529.8, score=76.5]} {RNA1509_32599} {RNA1310_1188} {RNA815_252.1}
3. MligTC455_38178 19 0.39 Mlig455_025460

Neo: -

Age: -

 SIX4 0.984 - - - - 0.984 - Mlig455_025460 {REF} {Length: 2329} {Pfam: Transcriptional regulator, SIX1, N-terminal SD domain [PF16878.7, score=141.7]; Homeodomain [PF00046.31, score=57.9]; Homeobox KN domain [PF05920.13, score=40.9]} {Human: ENSG00000100625, SIX4, SIX homeobox 4, [RH, Score=271, Expect=6e-84]} {Mouse: ENSMUSG00000034460, Six4, sine oculis-related homeobox 4, [RH, Score=270, Expect=1e-83]} {Dmel: FBgn0027364, Six4, [RH, Score=254, Expect=2e-81]} {Celegans: WBGene00000454, ceh-33, Homeobox protein ceh-33, [Score=202, Expect=3e-63]} {Smed: dd_Smed_v6_37930_0_1, dd_Smed_v6_37930_0_1, [RH, Score=244, Expect=7e-79]}
4. MligTC455_30866 34 0.71 Mlig455_046838, Mlig455_051777, Mlig455_057617

Neo: -

Age: -

 0.982 - - - - 0.982 -

Mlig455_046838 {REF} {Length: 3493} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=116.6]; Endonuclease-reverse transcriptase [PF14529.8, score=76.1]; DDE superfamily endonuclease [PF13358.8, score=48.0]; Transposase [PF01498.20, score=30.4]} {Smed: dd_Smed_v6_16239_0_2, dd_Smed_v6_16239_0_2, [RH, Score=180, Expect=3e-52]} {RNA1509_489} {RNA1310_933} {RNA815_252.1}

Mlig455_051777 {REF} {Length: 3726} {TRANSSPLICED} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=126.7]; Endonuclease-reverse transcriptase [PF14529.8, score=77.1]} {RNA1509_32599} {RNA1310_1188} {RNA815_252.1}

Mlig455_057617 {REF} {Length: 2886} {TRANSSPLICED} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=117.2]; Endonuclease-reverse transcriptase [PF14529.8, score=76.5]} {RNA1509_489} {RNA1310_1123.1} {RNA815_252.1}
5. MligTC455_34367 19 0.41 Mlig455_012646, Mlig455_028858, Mlig455_064019

Neo: -

Age: Up-Down-Down

 0.982 - - - - 0.982 -

Mlig455_012646 {REF} {Length: 1929} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=60.6]} {RNA1509_32599} {RNA1310_1659} {RNA815_252.2}

Mlig455_028858 {REF} {Length: 4856} {TRANSSPLICED} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=117.8]; Endonuclease-reverse transcriptase [PF14529.8, score=73.1]} {RNA1509_32599} {RNA1310_1123.1} {RNA815_252.1}

Mlig455_064019 {REF} {Length: 1818} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=119.9]; RNase H [PF00075.26, score=49.6]; Reverse transcriptase-like [PF13456.8, score=20.9]} {RNA1509_32599} {RNA1310_1659} {RNA815_252.1}
6. MligTC455_40502 75 1.57 Mlig455_011578

Neo: -

Age: Down-Up-Down

 SPATA18 0.975 - - - - 0.975 - Mlig455_011578 {REF} {Length: 2873} {TRANSSPLICED} {Pfam: Mitochondria-eating protein [PF16026.7, score=153.7]} {Human: ENSG00000163071, SPATA18, spermatogenesis associated 18, [Score=179, Expect=2e-48]} {Mouse: ENSMUSG00000029155, Spata18, spermatogenesis associated 18, [Score=220, Expect=3e-63]} {Smed: dd_Smed_v6_6321_0_1, dd_Smed_v6_6321_0_1, [Score=344, Expect=3e-111]} {RNA1509_30652} {RNA1310_30604} {RNA815_17332}
7. MligTC455_01394 23 0.48 Mlig455_005557

Neo: -

Age: -

Regeneration-upregulated R2: 6.973

Regeneration-enriched R2: 6.973

 0.973 - - - - 0.973 - Mlig455_005557 {REF} {Length: 2240} {NoTransDecoderORF} {RNA1310_104498.1}
8. MligTC455_16876 78 1.62 Mlig455_025697

Neo: Irradiation

Age: Up-Down-Down

 RBCK1 0.971 - - - - 0.971 - Mlig455_025697 {REF} {Length: 3925} {Pfam: Zn-finger in Ran binding protein and others [PF00641.20, score=29.6]} {Human: ENSG00000125826, RBCK1, RANBP2-type and C3HC4-type zinc finger containing 1, [Score=55.1, Expect=1e-07]} {RNA1509_38159, RNA1509_38232} {RNA1310_12341.1, RNA1509_38159} {RNA1509_38159, RNA815_19924}
9. MligTC455_26283 32 0.66 Mlig455_017872

Neo: -

Age: -

 0.968 - - - - 0.968 - Mlig455_017872 {REF} {Length: 2794} {RNA1509_998} {RNA1310_87.2} {RNA815_3880}
10. MligTC455_50577 372 7.75 Mlig455_009754, Mlig455_070109

Neo: -

Age: Up-Down-Down

Region-enriched R2: 2.637/0.02987

 DOK7 0.968 - - - - 0.968 -

Mlig455_009754 {REF} {Length: 6723} {Human: ENSG00000175920, DOK7, docking protein 7, [RH, Score=57.4, Expect=7e-08]} {Mouse: ENSMUSG00000044716, Dok7, docking protein 7, [RH, Score=58.2, Expect=3e-08]} {Smed: dd_Smed_v6_7993_0_1, dd_Smed_v6_7993_0_1, [RH, Score=60.5, Expect=3e-09]} {RNA1509_32355} {RNA1310_8851} {RNA815_23525}

Mlig455_070109 {REF} {Length: 4418} {Human: ENSG00000175920, DOK7, docking protein 7, [RH, Score=57.4, Expect=6e-08]} {Mouse: ENSMUSG00000044716, Dok7, docking protein 7, [RH, Score=58.5, Expect=2e-08]} {Smed: dd_Smed_v6_7993_0_1, dd_Smed_v6_7993_0_1, [RH, Score=60.8, Expect=3e-09]} {RNA1509_32355} {RNA1310_8851} {RNA815_23525}
11. MligTC455_18891 275 5.73 Mlig455_024941

Neo: -

Age: -

Region-enriched R2: 2.016/0.02450

 0.961 - - - - 0.961 - Mlig455_024941 {REF} {Length: 394} {NoTransDecoderORF} {RNA1509_45136} {RNA1310_56753} {RNA815_28269}
12. MligTC455_22762 328 6.84 Mlig455_036232

Neo: -

Age: logFC(26M/2M)=0.467

 ELOVL4 0.959 - - - - 0.959 - Mlig455_036232 {REF} {Length: 1770} {TRANSSPLICED} {Pfam: GNS1/SUR4 family [PF01151.20, score=205.6]} {Human: ENSG00000118402, ELOVL4, ELOVL fatty acid elongase 4, [RH, Score=308, Expect=2e-104]} {Mouse: ENSMUSG00000032262, Elovl4, elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4, [RH, Score=304, Expect=5e-103]} {Dmel: FBgn0052072, Elo68alpha, Elongase 68alpha, [RH, Score=214, Expect=2e-68]} {Celegans: WBGene00001245, elo-7, Elongation of very long chain fatty acids protein, [Score=81.3, Expect=1e-17]} {Smed: dd_Smed_v6_7835_0_1, dd_Smed_v6_7835_0_1, [Score=308, Expect=2e-105]} {RNA1509_11261} {RNA1310_21427.1} {RNA815_6649.1}
13. MligTC455_28586 32 0.66 Mlig455_032084

Neo: -

Age: Up-Down-Down

 0.957 - - - - 0.957 - Mlig455_032084 {REF} {Length: 7595} {RNA1509_42521, RNA1509_44223, RNA1509_46209} {RNA1310_31499, RNA1509_42521, RNA1509_46209} {RNA1509_42521, RNA1509_46209, RNA815_19070}
14. MligTC455_17269 486 10.13 Mlig455_025715, Mlig455_025767

Neo: -

Age: Up-Down-Down

 MAP3K3 0.956 - - - - 0.956 -

Mlig455_025715 {REF} {Length: 8424} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=230.7]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=149.4]; PB1 domain [PF00564.26, score=24.9]; Fungal protein kinase [PF17667.3, score=22.9]; Kinase-like [PF14531.8, score=20.6]; ABC1 atypical kinase-like domain [PF03109.18, score=18.1]} {Human: ENSG00000198909, MAP3K3, mitogen-activated protein kinase kinase kinase 3, [RH, Score=344, Expect=6e-105]; ENSG00000169967, MAP3K2, mitogen-activated protein kinase kinase kinase 2, [RH, Score=341, Expect=1e-103]} {Mouse: ENSMUSG00000020700, Map3k3, mitogen-activated protein kinase kinase kinase 3, [RH, Score=338, Expect=6e-103]; ENSMUSG00000024383, Map3k2, mitogen-activated protein kinase kinase kinase 2, [RH, Score=336, Expect=5e-102]} {Dmel: FBgn0024329, Mekk1, [Score=163, Expect=3e-40]} {Celegans: WBGene00003822, nsy-1, Mitogen-activated protein kinase kinase kinase nsy-1, [Score=166, Expect=3e-41]} {Smed: dd_Smed_v6_9266_0_1, dd_Smed_v6_9266_0_1, [RH, Score=281, Expect=1e-82]} {RNA1509_28700} {RNA1310_9149} {RNA815_5510}

Mlig455_025767 {REF} {Length: 6531} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=232.7]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=151.4]; PB1 domain [PF00564.26, score=27.0]; Fungal protein kinase [PF17667.3, score=24.7]; Kinase-like [PF14531.8, score=23.5]; ABC1 atypical kinase-like domain [PF03109.18, score=20.0]} {Human: ENSG00000198909, MAP3K3, mitogen-activated protein kinase kinase kinase 3, [RH, Score=348, Expect=1e-112]; ENSG00000169967, MAP3K2, mitogen-activated protein kinase kinase kinase 2, [RH, Score=345, Expect=3e-111]} {Mouse: ENSMUSG00000020700, Map3k3, mitogen-activated protein kinase kinase kinase 3, [RH, Score=344, Expect=4e-111]; ENSMUSG00000024383, Map3k2, mitogen-activated protein kinase kinase kinase 2, [RH, Score=340, Expect=9e-110]} {Dmel: FBgn0024329, Mekk1, [Score=166, Expect=2e-43]} {Celegans: WBGene00001526, gck-1, Germinal center kinase 1, [Score=167, Expect=8e-45]} {Smed: dd_Smed_v6_9266_0_1, dd_Smed_v6_9266_0_1, [RH, Score=286, Expect=1e-89]} {RNA1509_34435, RNA1509_39187} {RNA1310_8418.1, RNA1509_34435, RNA1509_39187} {RNA1509_34435, RNA1509_39187, RNA815_5510}
15. MligTC455_33475 168 3.5 Mlig455_036879

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.551

Region-enriched R8: 7.210/0.00005
Region-enriched R7: 5.996/0.00183

 0.956 - - - - 0.956 - Mlig455_036879 {REF} {Length: 2954} {RNA1509_20567} {RNA1310_1034.1} {RNA815_502.1}
16. MligTC455_28213 41 0.86 Mlig455_043975

Neo: -

Age: -

Region-enriched R4: 1.672/0.04531

 0.954 - - - - 0.954 - Mlig455_043975 {REF} {Length: 2640} {Mouse: ENSMUSG00000070331, Qrich2, glutamine rich 2, [Score=58.2, Expect=6e-08]} {RNA1509_245} {RNA1310_71097} {RNA815_18938.2}
17. MligTC455_48998 844 17.59 Mlig455_042574

Neo: -

Age: -

 GRIK2 0.954 - - - - 0.954 - Mlig455_042574 {REF} {Length: 4545} {Pfam: Ligand-gated ion channel [PF00060.28, score=98.9]; Receptor family ligand binding region [PF01094.30, score=46.6]; Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=43.9]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=39.5]} {Human: ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=128, Expect=3e-29]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=126, Expect=1e-28]} {Mouse: ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=125, Expect=1e-28]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=125, Expect=2e-28]; ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=122, Expect=2e-27]} {Dmel: FBgn0039927, CG11155, [Score=142, Expect=8e-34]} {Celegans: WBGene00001614, glr-3, GLutamate Receptor family (AMPA), [Score=129, Expect=6e-30]} {Smed: dd_Smed_v6_31078_0_1, dd_Smed_v6_31078_0_1, [Score=223, Expect=3e-64]} {RNA1509_10680} {RNA1310_13007.1} {RNA815_11044}
18. MligTC455_01420 20 0.41 Mlig455_030565

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_030565 {REF} {Length: 1528} {RNA1509_15264} {RNA1310_26288} {RNA815_11358}
19. MligTC455_20655 13 0.28 Mlig455_013604

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_013604 {REF} {Length: 487} {NoTransDecoderORF} {RNA1509_17723} {RNA1310_2938.1} {RNA815_14343.1}
20. MligTC455_22226 219 4.55 Mlig455_056124

Neo: -

Age: -

 DNAH12 0.952 - - - - 0.952 - Mlig455_056124 {REF} {Length: 12587} {Pfam: Hydrolytic ATP binding site of dynein motor region [PF12774.9, score=508.4]; Dynein heavy chain, N-terminal region 2 [PF08393.15, score=465.5]; Dynein heavy chain C-terminal domain [PF18199.3, score=385.3]; P-loop containing dynein motor region D4 [PF12780.9, score=347.2]; ATP-binding dynein motor region [PF12781.9, score=299.3]; P-loop containing dynein motor region [PF12775.9, score=276.4]; Dynein heavy chain AAA lid domain [PF18198.3, score=192.4]; Microtubule-binding stalk of dynein motor [PF12777.9, score=176.8]; Dynein heavy chain region D6 P-loop domain [PF03028.17, score=153.9]; Dynein heavy chain AAA lid domain [PF17852.3, score=118.0]; AAA domain (dynein-related subfamily) [PF07728.16, score=76.5]; AAA+ lid domain [PF17857.3, score=60.1]; ATPase family associated with various cellular activities (AAA) [PF00004.31, score=36.0]; AAA domain [PF13401.8, score=21.7]; RNA helicase [PF00910.24, score=20.4]} {Human: ENSG00000174844, DNAH12, dynein axonemal heavy chain 12, [RH, Score=5023, Expect=0.0]} {Mouse: ENSMUSG00000021879, Dnah12, dynein, axonemal, heavy chain 12, [RH, Score=5006, Expect=0.0]; ENSMUSG00000116451, Dnah12, dynein, axonemal, heavy chain 12, [RH, Score=5006, Expect=0.0]} {Dmel: FBgn0013811, Dhc62B, Dynein heavy chain at 62B, [RH, Score=3675, Expect=0.0]} {Celegans: WBGene00000485, che-3, Cytoplasmic dynein 2 heavy chain 1, [Score=1005, Expect=0.0]} {Smed: dd_Smed_v6_6941_0_1, dd_Smed_v6_6941_0_1, [RH, Score=5650, Expect=0.0]} {RNA1509_306, RNA1509_4980} {RNA1310_68.1, RNA1509_306, RNA1509_4980} {RNA1509_306, RNA1509_4980, RNA815_82}
21. MligTC455_39581 52 1.08 Mlig455_019568

Neo: -

Age: Up-Down-Up

 0.952 - - - - 0.952 - Mlig455_019568 {REF} {Length: 4393} {TRANSSPLICED} {Pfam: Peptidase family M13 [PF01431.23, score=19.5]} {Dmel: FBgn0039023, CG4723, [Score=51.2, Expect=4e-06]} {RNA1310_32083} {RNA815_12766}
22. MligTC455_08551 88 1.82 Mlig455_024773

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_024773 {REF} {Length: 512}
23. MligTC455_41647 712 14.83 Mlig455_068028

Neo: -

Age: logFC(26M/2M)=-0.268

Region-enriched R7: 1.877/0.00218

 KLC1 0.951 - - - - 0.951 - Mlig455_068028 {REF} {Length: 3251} {Pfam: Tetratricopeptide repeat [PF13424.8, score=217.7]; Tetratricopeptide repeat [PF13374.8, score=174.6]; Tetratricopeptide repeat [PF13176.8, score=95.9]; Tetratricopeptide repeat [PF00515.30, score=78.8]; Tetratricopeptide repeat [PF07719.19, score=61.0]; Tetratricopeptide repeat [PF13432.8, score=49.5]; Tetratricopeptide repeat [PF13181.8, score=47.6]; Tetratricopeptide repeat [PF07721.16, score=39.7]; MalT-like TPR region [PF17874.3, score=36.5]; Tetratricopeptide repeat [PF14559.8, score=35.5]; Tetratricopeptide repeat [PF13428.8, score=32.1]; Tetratricopeptide repeat [PF13431.8, score=29.0]; Anaphase-promoting complex, cyclosome, subunit 3 [PF12895.9, score=27.0]} {Human: ENSG00000126214, KLC1, kinesin light chain 1, [RH, Score=539, Expect=0.0]; ENSG00000256500, AL139300.1, novel protein, [RH, Score=536, Expect=0.0]; ENSG00000174996, KLC2, kinesin light chain 2, [RH, Score=516, Expect=1e-178]} {Mouse: ENSMUSG00000021288, Klc1, kinesin light chain 1, [RH, Score=534, Expect=0.0]; ENSMUSG00000024862, Klc2, kinesin light chain 2, [RH, Score=514, Expect=4e-178]} {Dmel: FBgn0010235, Klc, Kinesin light chain, [RH, Score=515, Expect=3e-180]} {Celegans: WBGene00002215, klc-2, Kinesin light chain, [RH, Score=509, Expect=6e-178]} {Smed: dd_Smed_v6_8806_0_1, dd_Smed_v6_8806_0_1, [RH, Score=522, Expect=0.0]} {RNA1509_19452, RNA1509_33672, RNA1509_41767, RNA1509_59912} {RNA1310_2618, RNA1509_19452, RNA1509_33672, RNA1509_41767, RNA1509_59912} {RNA1509_19452, RNA1509_33672, RNA1509_41767, RNA1509_59912, RNA815_6395}
24. MligTC455_02232 152 3.17 Mlig455_002887

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_002887 {REF} {Length: 1354} {Dmel: FBgn0035253, CG7971, [Score=47.8, Expect=6e-06]} {RNA1310_125762}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA