M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_21429

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_21429 18 0.37 Mlig455_049174

Neo: -

Age: -

 Mlig455_049174 {REF} {Length: 2613} {NoTransDecoderORF} {RNA1310_50381} {RNA815_39191}

Cumulative graph for MligTC455_21429

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.097 0.529 1.00000 1.00000
RegionR2 0.789 0.529 0.99997 1.00000
RegionR3 -0.332 0.529 0.99995 1.00000
RegionR4 -1.229 0.529 0.99990 1.00000
RegionR5 -0.972 0.529 0.99999 1.00000
RegionR6 -0.675 0.529 0.99999 1.00000
RegionR7 0.77 0.529 0.99998 1.00000
RegionR8 1.553 0.529 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.821 0.529 1.00000 1.00000
RegenerationR2 1.299 0.529 1.00000 1.00000
RegenerationR3 -0.809 0.529 0.99995 1.00000
RegenerationR4 -0.447 0.529 0.99994 1.00000
RegenerationR5 1.751 0.529 0.99982 1.00000
RegenerationR6 1.936 0.529 0.99971 1.00000
RegenerationBL -1.805 0.529 1.00000 1.00000
RegenerationTP -1.019 0.529 0.99999 1.00000


Genes with expression patterns similar to MligTC455_21429

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_21429 18 0.37 Mlig455_049174

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_049174 {REF} {Length: 2613} {NoTransDecoderORF} {RNA1310_50381} {RNA815_39191}
2. MligTC455_14596 9 0.19 Mlig455_063884

Neo: -

Age: -

 0.991 - - - - 0.991 - Mlig455_063884 {REF} {Length: 439} {NoTransDecoderORF} {RNA1310_138760}
3. MligTC455_57696 4 0.08 Mlig455_019716

Neo: -

Age: -

 0.986 - - - - 0.986 - Mlig455_019716 {REF} {Length: 85} {NoTransDecoderORF}
4. MligTC455_26220 49 1.03 Mlig455_032627

Neo: Irradiation

Age: -

 0.983 - - - - 0.983 - Mlig455_032627 {REF} {Length: 4049} {TRANSSPLICED} {RNA1509_38431} {RNA1310_17439} {RNA815_9396}
5. MligTC455_08375 13 0.27 Mlig455_029564

Neo: -

Age: -

 0.981 - - - - 0.981 - Mlig455_029564 {REF} {Length: 647} {NoTransDecoderORF}
6. MligTC455_49644 38 0.79 Mlig455_027199

Neo: Int S/G2/M

Age: -

 0.979 - - - - 0.979 - Mlig455_027199 {REF} {Length: 2902} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=44.2]} {RNA1509_25402} {RNA1310_45818.1} {RNA815_14744.1}
7. MligTC455_25719 165 3.44 Mlig455_004747

Neo: -

Age: -

 CHP1 0.978 - - - - 0.978 - Mlig455_004747 {REF} {Length: 2272} {TRANSSPLICED} {Pfam: EF-hand domain pair [PF13499.8, score=45.0]; EF-hand domain [PF13405.8, score=34.9]; EF hand [PF00036.34, score=28.8]; EF hand [PF13202.8, score=22.3]; EF-hand domain pair [PF13833.8, score=18.6]} {Human: ENSG00000187446, CHP1, calcineurin like EF-hand protein 1, [Score=122, Expect=2e-34]} {Mouse: ENSMUSG00000014077, Chp1, calcineurin-like EF hand protein 1, [RH, Score=123, Expect=5e-35]} {Dmel: FBgn0037358, elm, ethanol sensitive with low memory, [RH, Score=142, Expect=9e-43]} {Celegans: WBGene00014109, chpf-1, Calcineurin-like EF-Hand Protein Family member, [RH, Score=115, Expect=2e-32]} {Smed: dd_Smed_v6_1504_0_1, dd_Smed_v6_1504_0_1, [RH, Score=118, Expect=9e-34]} {RNA1509_12947} {RNA1310_50406} {RNA815_26406}
8. MligTC455_06741 156 3.25 Mlig455_001405, Mlig455_056658, Mlig455_064262, Mlig455_070036

Neo: -

Age: -

 0.971 - - - - 0.971 -

Mlig455_001405 {REF} {Length: 203} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_55741} {RNA1310_25713} {RNA815_19630.1}

Mlig455_056658 {REF} {Length: 355} {NoTransDecoderORF} {RNA1509_55741} {RNA1310_25713} {RNA815_19630.1}

Mlig455_064262 {REF} {Length: 202} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_55741} {RNA1310_25713} {RNA815_19630.1}

Mlig455_070036 {REF} {Length: 244} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_55741} {RNA1310_25713} {RNA815_19630.1}
9. MligTC455_38792 39 0.81 Mlig455_018807, Mlig455_029868

Neo: -

Age: -

 RPN1 0.968 - - - - 0.968 -

Mlig455_018807 {REF} {Length: 2985} {Pfam: Ribophorin I [PF04597.16, score=429.0]; DNA repair REX1-B [PF14966.8, score=27.1]} {Human: ENSG00000163902, RPN1, ribophorin I, [RH, Score=521, Expect=3e-179]} {Mouse: ENSMUSG00000030062, Rpn1, ribophorin I, [RH, Score=521, Expect=1e-179]} {Dmel: FBgn0053303, CG33303, [RH, Score=397, Expect=3e-133]} {Celegans: WBGene00020683, ribo-1, Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1, [RH, Score=350, Expect=3e-113]} {Smed: dd_Smed_v6_853_0_1, dd_Smed_v6_853_0_1, [RH, Score=572, Expect=0.0]} {RNA1509_1279} {RNA1310_5963} {RNA815_1798.1}

Mlig455_029868 {REF} {Length: 355} {RNA1509_21181} {RNA1310_15650.2} {RNA815_22833}
10. MligTC455_12423 7 0.14 Mlig455_067821

Neo: -

Age: -

 0.967 - - - - 0.967 - Mlig455_067821 {REF} {Length: 422} {NoTransDecoderORF} {RNA1509_20962} {RNA1310_1856.3} {RNA815_6906.1}
11. MligTC455_37365 43 0.9 Mlig455_018623

Neo: -

Age: logFC(26M/2M)=1.793

 0.965 - - - - 0.965 - Mlig455_018623 {REF} {Length: 776} {NoTransDecoderORF} {RNA1509_6435} {RNA1310_5963} {RNA815_1798.1}
12. MligTC455_25648 207 4.31 Mlig455_032380

Neo: Int S/G2/M

Age: -

 0.962 - - - - 0.962 - Mlig455_032380 {REF} {Length: 2398} {RNA1310_62405.2} {RNA815_37381.1}
13. MligTC455_26289 103 2.15 Mlig455_031915

Neo: -

Age: Up-Down-Down

Region-enriched R2: 3.261/0.04331

 0.959 - - - - 0.959 - Mlig455_031915 {REF} {Length: 3995} {Pfam: Elongation factor G C-terminus [PF00679.26, score=37.7]} {RNA1509_50100} {RNA1310_17404.1} {RNA815_5685.2}
14. MligTC455_52237 15 0.32 Mlig455_013491

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_013491 {REF} {Length: 1488} {NoTransDecoderORF} {RNA1509_50956} {RNA1310_27383} {RNA815_9852.1}
15. MligTC455_53814 76 1.59 Mlig455_013605

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_013605 {REF} {Length: 467} {NoTransDecoderORF} {RNA1509_22316} {RNA1310_77656}
16. MligTC455_18491 8 0.17 Mlig455_064111

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_064111 {REF} {Length: 2875} {NoTransDecoderORF} {RNA1509_54153} {RNA1310_60879} {RNA815_57959}
17. MligTC455_12745 82 1.71 Mlig455_027479

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.603

 PRXL2C 0.954 - - - - 0.954 - Mlig455_027479 {REF} {Length: 2497} {Pfam: AhpC/TSA antioxidant enzyme [PF13911.8, score=35.1]; AhpC/TSA family [PF00578.23, score=27.1]; Redoxin [PF08534.12, score=25.1]} {Human: ENSG00000158122, PRXL2C, peroxiredoxin like 2C, [RH, Score=137, Expect=1e-39]} {Mouse: ENSMUSG00000021482, Aaed1, AhpC/TSA antioxidant enzyme domain containing 1, [RH, Score=134, Expect=1e-38]} {Smed: dd_Smed_v6_4424_0_1, dd_Smed_v6_4424_0_1, [Score=135, Expect=2e-39]} {RNA1509_42365} {RNA1310_38096, RNA1509_42365} {RNA1509_42365, RNA815_19477}
18. MligTC455_25537 267 5.55 Mlig455_004658

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_004658 {REF} {Length: 3956} {TRANSSPLICED} {Pfam: Gamma tubulin complex component C-terminal [PF04130.15, score=54.0]; Gamma tubulin complex component N-terminal [PF17681.3, score=19.7]} {Mouse: ENSMUSG00000033790, Tubgcp5, tubulin, gamma complex associated protein 5, [Score=57.4, Expect=8e-08]} {RNA1509_14096, RNA1509_41301} {RNA1310_22726, RNA1509_41301} {RNA1509_41301, RNA815_17783}
19. MligTC455_33332 15 0.32 Mlig455_050529

Neo: -

Age: -

 TLR4 0.951 - - - - 0.951 - Mlig455_050529 {REF} {Length: 5807} {Pfam: Leucine rich repeat [PF13855.8, score=88.8]; Leucine Rich repeats (2 copies) [PF12799.9, score=65.7]; TIR domain [PF01582.22, score=26.4]; Leucine Rich Repeat [PF00560.35, score=23.4]; TIR domain [PF13676.8, score=21.7]} {Human: ENSG00000136869, TLR4, toll like receptor 4, [Score=83.2, Expect=1e-15]} {Mouse: ENSMUSG00000030600, Lrfn1, leucine rich repeat and fibronectin type III domain containing 1, [Score=72.0, Expect=2e-12]} {Dmel: FBgn0026760, Tehao, [Score=79.7, Expect=6e-15]} {Celegans: WBGene00004854, slt-1, Slit homolog 1 protein, [Score=53.1, Expect=8e-07]} {RNA1310_135658} {RNA815_11474}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA