M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_28550

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_28550 147 3.06 Mlig455_048750

Neo: -

Age: logFC(26M/2M)=1.038

Region-enriched R5: 2.521/0.03072

 NDRG1 Mlig455_048750 {REF} {Length: 2415} {TRANSSPLICED} {Pfam: Ndr family [PF03096.16, score=186.2]} {Human: ENSG00000104419, NDRG1, N-myc downstream regulated 1, [Score=125, Expect=9e-32]; ENSG00000101079, NDRG3, NDRG family member 3, [Score=122, Expect=1e-30]} {Mouse: ENSMUSG00000027634, Ndrg3, N-myc downstream regulated gene 3, [Score=119, Expect=1e-29]; ENSMUSG00000005125, Ndrg1, N-myc downstream regulated gene 1, [Score=118, Expect=3e-29]} {Dmel: FBgn0043070, MESK2, Misexpression suppressor of KSR 2, [Score=127, Expect=2e-32]} {Celegans: WBGene00013020, Y48G10A.3, [RH, Score=117, Expect=1e-29]} {Smed: dd_Smed_v6_1911_0_1, dd_Smed_v6_1911_0_1, [Score=226, Expect=2e-70]} {RNA1509_13688} {RNA1310_24392} {RNA815_9919}

Cumulative graph for MligTC455_28550

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.957 2.315 0.99972 1.00000
RegionR2 0.883 2.315 0.44341 0.83246
RegionR3 0.625 2.315 0.54156 1.00000
RegionR4 2.074 2.315 0.07986 0.26455
RegionR5 2.521 2.315 0.00427 0.03072
RegionR6 1.214 2.315 0.29170 0.88322
RegionR7 0.994 2.315 0.45389 1.00000
RegionR8 -4.354 2.315 0.99956 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.341 2.315 1.00000 1.00000
RegenerationR2 -0.618 2.315 0.34522 0.77904
RegenerationR3 1.037 2.315 0.18228 0.61872
RegenerationR4 0.376 2.315 0.62040 0.92089
RegenerationR5 0.243 2.315 0.69933 0.95135
RegenerationR6 0.557 2.315 0.48376 0.79428
RegenerationBL 2.763 2.315 0.03343 0.20496
RegenerationTP 3.609 2.315 0.03257 0.30235


Genes with expression patterns similar to MligTC455_28550

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_28550 147 3.06 Mlig455_048750

Neo: -

Age: logFC(26M/2M)=1.038

Region-enriched R5: 2.521/0.03072

 NDRG1 5 1.000 - 1.000 1.000 1.000 1.000 Mlig455_048750 {REF} {Length: 2415} {TRANSSPLICED} {Pfam: Ndr family [PF03096.16, score=186.2]} {Human: ENSG00000104419, NDRG1, N-myc downstream regulated 1, [Score=125, Expect=9e-32]; ENSG00000101079, NDRG3, NDRG family member 3, [Score=122, Expect=1e-30]} {Mouse: ENSMUSG00000027634, Ndrg3, N-myc downstream regulated gene 3, [Score=119, Expect=1e-29]; ENSMUSG00000005125, Ndrg1, N-myc downstream regulated gene 1, [Score=118, Expect=3e-29]} {Dmel: FBgn0043070, MESK2, Misexpression suppressor of KSR 2, [Score=127, Expect=2e-32]} {Celegans: WBGene00013020, Y48G10A.3, [RH, Score=117, Expect=1e-29]} {Smed: dd_Smed_v6_1911_0_1, dd_Smed_v6_1911_0_1, [Score=226, Expect=2e-70]} {RNA1509_13688} {RNA1310_24392} {RNA815_9919}
2. MligTC455_19886 82 1.72 Mlig455_062209

Neo: -

Age: -

 1.67 - - 0.953 0.717 - - Mlig455_062209 {REF} {Length: 3409} {Pfam: Sodium:neurotransmitter symporter family [PF00209.20, score=42.5]} {Smed: dd_Smed_v6_8649_0_1, dd_Smed_v6_8649_0_1, [RH, Score=334, Expect=7e-106]} {RNA1509_22422} {RNA1310_4548} {RNA815_8182}
3. MligTC455_19231 149 3.11 Mlig455_064092

Neo: -

Age: -

Region-enriched R7: 4.202/0.00037
Region-enriched R6: 3.700/0.00828

 0.984 - - - - 0.984 - Mlig455_064092 {REF} {Length: 1757} {RNA1509_35166} {RNA1310_79280} {RNA815_45488}
4. MligTC455_34364 572 11.92 Mlig455_033652

Neo: -

Age: Up-Up-Down

 0.97 - - - 0.970 - - Mlig455_033652 {REF} {Length: 1805} {NoTransDecoderORF} {RNA1509_33860} {RNA1310_19318, RNA1509_33860} {RNA1509_33860, RNA815_15100}
5. MligTC455_35022 166 3.45 Mlig455_007549

Neo: -

Age: logFC(26M/2M)=1.108

 NDUFA2 0.967 - - - - 0.967 - Mlig455_007549 {REF} {Length: 645} {TRANSSPLICED} {Pfam: Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain [PF05047.18, score=49.8]} {Human: ENSG00000131495, NDUFA2, NADH:ubiquinone oxidoreductase subunit A2, [RH, Score=97.1, Expect=2e-27]} {Mouse: ENSMUSG00000014294, Ndufa2, NADH:ubiquinone oxidoreductase subunit A2, [RH, Score=94.7, Expect=1e-26]} {Dmel: FBgn0040705, ND-B8, NADH dehydrogenase (ubiquinone) B8 subunit, [RH, Score=68.6, Expect=2e-16]} {Celegans: WBGene00013406, Y63D3A.7, [RH, Score=88.2, Expect=2e-24]} {Smed: dd_Smed_v6_1815_0_1, dd_Smed_v6_1815_0_1, [RH, Score=87.4, Expect=3e-24]} {RNA1509_16031} {RNA1310_56837.1} {RNA815_28457}
6. MligTC455_41483 50 1.05 Mlig455_006754

Neo: -

Age: -

 0.966 - - - - 0.966 - Mlig455_006754 {REF} {Length: 3493} {RNA1310_64559} {RNA815_57833}
7. MligTC455_12709 342 7.13 Mlig455_000494

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=0.963

Region-enriched R3: 4.960/0.00124
Region-enriched R5: 4.179/0.00235

Regeneration-upregulated TP: 7.755

Regeneration-enriched TP: 7.755

 0.965 - - - - 0.965 - Mlig455_000494 {REF} {Length: 1364} {RNA1509_6476} {RNA1310_70627.1} {RNA815_15963}
8. MligTC455_51698 365 7.61 Mlig455_028928

Neo: Irradiation

Age: -

Region-enriched R5: 1.818/0.00019

 TADA1 0.965 - - - - 0.965 - Mlig455_028928 {REF} {Length: 3298} {Pfam: Transcriptional regulator of RNA polII, SAGA, subunit [PF12767.9, score=36.6]} {Human: ENSG00000152382, TADA1, transcriptional adaptor 1, [RH, Score=57.0, Expect=2e-08]} {Mouse: ENSMUSG00000026563, Tada1, transcriptional adaptor 1, [RH, Score=57.0, Expect=2e-08]} {RNA1509_27031, RNA1509_50645} {RNA1310_10602.1, RNA1509_27031, RNA1509_50645} {RNA1509_27031, RNA1509_50645, RNA815_2679.1}
9. MligTC455_27687 322 6.71 Mlig455_070624

Neo: Irradiation

Age: -

 ZFP62 0.962 - - - 0.962 - - Mlig455_070624 {REF} {Length: 6382} {TRANSSPLICED} {Pfam: C2H2-type zinc finger [PF13894.8, score=89.8]; Zinc-finger double domain [PF13465.8, score=82.9]; Zinc finger, C2H2 type [PF00096.28, score=66.6]; Zinc finger C2H2-type, 3 repeats [PF18868.3, score=23.7]} {Human: ENSG00000196670, ZFP62, ZFP62 zinc finger protein, [Score=153, Expect=5e-37]; ENSG00000167380, ZNF226, zinc finger protein 226, [Score=153, Expect=3e-37]; ENSG00000272602, ZNF595, zinc finger protein 595, [Score=152, Expect=1e-38]; ENSG00000196867, ZFP28, ZFP28 zinc finger protein, [Score=150, Expect=4e-36]; ENSG00000197961, ZNF121, zinc finger protein 121, [Score=149, Expect=3e-38]; ENSG00000283201, AC092329.3, novel protein, [Score=147, Expect=1e-36]} {Mouse: ENSMUSG00000063108, Zfp26, zinc finger protein 26, [Score=154, Expect=2e-37]; ENSMUSG00000049321, Zfp2, zinc finger protein 2, [Score=149, Expect=2e-37]; ENSMUSG00000046311, Zfp62, zinc finger protein 62, [Score=147, Expect=3e-35]; ENSMUSG00000062861, Zfp28, zinc finger protein 28, [Score=147, Expect=2e-35]} {Dmel: FBgn0020309, crol, crooked legs, [Score=127, Expect=2e-29]} {Celegans: WBGene00003909, pag-3, Zinc finger protein PAG-3, [Score=84.7, Expect=4e-17]} {Smed: dd_Smed_v6_5058_0_1, dd_Smed_v6_5058_0_1, [RH, Score=830, Expect=0.0]} {RNA1509_1385, RNA1509_19208} {RNA1310_615.1, RNA1509_19208} {RNA1509_19208, RNA815_756}
10. MligTC455_45643 71 1.47 Mlig455_034710

Neo: -

Age: -

 MYNN 0.961 - - - 0.961 - - Mlig455_034710 {REF} {Length: 1929} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=50.7]; C2H2-type zinc finger [PF13894.8, score=44.8]; Zinc-finger double domain [PF13465.8, score=28.9]; C2H2-type zinc finger [PF13912.8, score=27.4]; C2H2-type zinc ribbon [PF15909.7, score=24.3]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=20.9]; Zinc finger C2H2-type, 3 repeats [PF18868.3, score=19.5]} {Human: ENSG00000085274, MYNN, myoneurin, [Score=83.2, Expect=1e-17]; ENSG00000213988, ZNF90, zinc finger protein 90, [Score=79.3, Expect=2e-16]} {Mouse: ENSMUSG00000091183, Gm5141, predicted gene 5141, [Score=82.8, Expect=1e-17]; ENSMUSG00000037730, Mynn, myoneurin, [Score=82.4, Expect=1e-17]; ENSMUSG00000074867, Zfp808, zinc finger protein 808, [Score=80.1, Expect=8e-17]} {Dmel: FBgn0005642, wdn, wings down, [Score=73.9, Expect=7e-15]} {Celegans: WBGene00012385, Y5F2A.4, [Score=65.1, Expect=4e-12]} {Smed: dd_Smed_v6_19859_0_1, dd_Smed_v6_19859_0_1, [Score=62.4, Expect=3e-11]} {RNA1509_15772} {RNA1310_17539} {RNA815_4812}
11. MligTC455_41444 445 9.26 Mlig455_001547

Neo: Irradiation

Age: Up-Up-Down

 TRIM3 0.958 - - - 0.958 - - Mlig455_001547 {REF} {Length: 5402} {Pfam: NHL repeat [PF01436.23, score=78.7]; B-box zinc finger [PF00643.26, score=43.4]} {Human: ENSG00000110171, TRIM3, tripartite motif containing 3, [Score=123, Expect=3e-28]} {Mouse: ENSMUSG00000036989, Trim3, tripartite motif-containing 3, [Score=122, Expect=4e-28]} {Dmel: FBgn0026206, mei-P26, meiotic P26, [RH, Score=459, Expect=1e-144]} {Celegans: WBGene00003559, ncl-1, B-box type zinc finger protein ncl-1, [Score=223, Expect=3e-61]} {Smed: dd_Smed_v6_6250_0_1, dd_Smed_v6_6250_0_1, [RH, Score=556, Expect=0.0]} {RNA1509_4482} {RNA1310_1955, RNA1509_4482} {RNA1509_4482, RNA815_2913.1}
12. MligTC455_52777 186 3.88 Mlig455_053495

Neo: -

Age: Down-Down-Up

 0.958 - - - - 0.958 - Mlig455_053495 {REF} {Length: 1069} {TRANSSPLICED} {RNA1509_51911} {RNA1310_24820.2} {RNA815_14661}
13. MligTC455_32471 396 8.25 Mlig455_010246

Neo: -

Age: Down-Down-Up

Region-enriched R4: 1.797/0.02628

 0.957 - - - - 0.957 - Mlig455_010246 {REF} {Length: 1841} {RNA1509_19589, RNA1509_37340} {RNA1310_40610, RNA1509_19589, RNA1509_37340} {RNA1509_19589, RNA1509_37340, RNA815_19739}
14. MligTC455_38425 255 5.31 Mlig455_010880

Neo: -

Age: -

 THADA 0.955 - - - 0.955 - - Mlig455_010880 {REF} {Length: 6504} {TRANSSPLICED} {Pfam: Putative death-receptor fusion protein (DUF2428) [PF10350.11, score=184.7]} {Human: ENSG00000115970, THADA, THADA, armadillo repeat containing, [Score=230, Expect=6e-60]} {Mouse: ENSMUSG00000024251, Thada, thyroid adenoma associated, [Score=221, Expect=2e-57]} {Dmel: FBgn0031077, THADA, [RH, Score=152, Expect=1e-36]} {Celegans: WBGene00022361, Y92H12A.5, [RH, Score=137, Expect=5e-32]} {Smed: dd_Smed_v6_12325_0_1, dd_Smed_v6_12325_0_1, [Score=184, Expect=1e-46]} {RNA1509_25979, RNA1509_55847} {RNA1310_2458.1, RNA1509_25979, RNA1509_55847} {RNA1509_25979, RNA1509_55847, RNA815_9736}
15. MligTC455_49615 1273 26.51 Mlig455_029719, Mlig455_034865

Neo: -

Age: logFC(26M/2M)=0.276

Regeneration-upregulated BL: 3.129

Regeneration-enriched BL: 3.129

 SHOC2 0.954 - - - - - 0.954

Mlig455_029719 {REF} {Length: 3635} {Pfam: Leucine rich repeat [PF13855.8, score=213.0]; Leucine Rich repeats (2 copies) [PF12799.9, score=106.0]; Leucine Rich Repeat [PF00560.35, score=35.5]; Leucine-rich repeat [PF14580.8, score=32.1]; BspA type Leucine rich repeat region (6 copies) [PF13306.8, score=22.9]} {Human: ENSG00000108061, SHOC2, SHOC2, leucine rich repeat scaffold protein, [Score=380, Expect=6e-124]} {Mouse: ENSMUSG00000024976, Shoc2, Shoc2, leucine rich repeat scaffold protein, [Score=379, Expect=2e-123]} {Dmel: FBgn0038504, Sur-8, [Score=403, Expect=3e-132]} {Celegans: WBGene00004929, soc-2, Leucine-rich repeat protein soc-2, [Score=359, Expect=3e-116]} {Smed: dd_Smed_v6_1909_0_1, dd_Smed_v6_1909_0_1, [Score=351, Expect=5e-113]} {RNA1509_12617, RNA1509_35671} {RNA1310_9871.1, RNA1509_12617, RNA1509_35671} {RNA1509_12617, RNA1509_35671, RNA815_10195}

Mlig455_034865 {REF} {Length: 3049} {Pfam: Leucine rich repeat [PF13855.8, score=181.1]; Leucine Rich repeats (2 copies) [PF12799.9, score=93.1]; Leucine-rich repeat [PF14580.8, score=36.5]; Leucine Rich Repeat [PF00560.35, score=32.7]; BspA type Leucine rich repeat region (6 copies) [PF13306.8, score=25.7]} {Human: ENSG00000108061, SHOC2, SHOC2, leucine rich repeat scaffold protein, [Score=270, Expect=4e-85]} {Mouse: ENSMUSG00000024976, Shoc2, Shoc2, leucine rich repeat scaffold protein, [Score=270, Expect=3e-85]} {Dmel: FBgn0038504, Sur-8, [Score=286, Expect=7e-91]} {Celegans: WBGene00004929, soc-2, Leucine-rich repeat protein soc-2, [Score=249, Expect=1e-77]} {Smed: dd_Smed_v6_6416_0_1, dd_Smed_v6_6416_0_1, [Score=260, Expect=1e-81]} {RNA1509_12617} {RNA1310_9871.2} {RNA815_10195}
16. MligTC455_52439 266 5.53 Mlig455_065368

Neo: -

Age: logFC(26M/2M)=-0.267

 0.953 - - - - 0.953 - Mlig455_065368 {REF} {Length: 2661} {TRANSSPLICED} {RNA1509_22620} {RNA1310_9393.1, RNA1509_22620} {RNA1509_22620, RNA815_16638}
17. MligTC455_38426 258 5.37 Mlig455_010852, Mlig455_010883

Neo: -

Age: Up-Down-Down

 0.951 - - - 0.951 - -

Mlig455_010852 {REF} {Length: 2558} {tRNA: His(GTG), score=60.8} {RNA1509_34614} {RNA1310_44996, RNA1509_34614} {RNA1509_34614, RNA815_60524}

Mlig455_010883 {REF} {Length: 183} {NoTransDecoderORF} {tRNA: His(GTG), score=60.8} {RNA1509_11551}
18. MligTC455_35189 272 5.67 Mlig455_017704

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=2.807

 ASTE1 0.95 - - - 0.950 - - Mlig455_017704 {REF} {Length: 3005} {TRANSSPLICED} {Pfam: XPG domain containing [PF12813.9, score=40.2]; XPG N-terminal domain [PF00752.19, score=31.3]} {Human: ENSG00000034533, ASTE1, asteroid homolog 1, [Score=112, Expect=2e-25]} {Mouse: ENSMUSG00000032567, Aste1, asteroid homolog 1, [Score=97.8, Expect=1e-20]} {Dmel: FBgn0015905, ast, asteroid, [Score=86.7, Expect=2e-17]} {Smed: dd_Smed_v6_12690_0_1, dd_Smed_v6_12690_0_1, [Score=135, Expect=1e-33]} {RNA1509_21473} {RNA1310_12314.1} {RNA815_6412}
19. MligTC455_35190 272 5.66 Mlig455_017756

Neo: -

Age: -

 0.95 - - - 0.950 - - Mlig455_017756 {REF} {Length: 2768} {TRANSSPLICED} {RNA1509_21473} {RNA1310_12314.1} {RNA815_6412}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA