M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_30761

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_30761 3551 73.99 Mlig455_039585, Mlig455_069818

Neo: -

Age: Up-Up-Down

Mlig455_039585 {REF} {Length: 5014} {Pfam: Ammonium Transporter Family [PF00909.23, score=121.3]} {Dmel: FBgn0038309, Amt, Ammonium transporter, [Score=160, Expect=3e-47]} {Celegans: WBGene00000135, amt-3, Putative ammonium transporter 3, [Score=136, Expect=4e-38]} {RNA1509_11254, RNA1509_1200} {RNA1310_29002, RNA1509_11254} {RNA1509_11254, RNA815_7853.1}

Mlig455_069818 {REF} {Length: 1115} {TRANSSPLICED} {RNA1509_1693} {RNA1310_29002} {RNA815_7853.1}

Cumulative graph for MligTC455_30761

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.763 6.342 0.08147 0.62322
RegionR2 -0.088 6.342 0.90295 1.00000
RegionR3 0.835 6.342 0.14817 0.65383
RegionR4 0.645 6.342 0.33448 0.65304
RegionR5 0.953 6.342 0.08672 0.27679
RegionR6 0.314 6.342 0.59121 1.00000
RegionR7 -0.382 6.342 0.52948 1.00000
RegionR8 -0.515 6.342 0.44561 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.959 6.342 0.08337 0.78241
RegenerationR2 0.193 6.342 0.79870 0.98950
RegenerationR3 -0.34 6.342 0.65818 0.93253
RegenerationR4 0.026 6.342 0.97574 1.00000
RegenerationR5 0.107 6.342 0.89456 1.00000
RegenerationR6 0.158 6.342 0.83903 0.99523
RegenerationBL -0.177 6.342 0.80048 1.00000
RegenerationTP 1.358 6.342 0.06401 0.40947


Genes with expression patterns similar to MligTC455_30761

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_30761 3551 73.99 Mlig455_039585, Mlig455_069818

Neo: -

Age: Up-Up-Down

 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_039585 {REF} {Length: 5014} {Pfam: Ammonium Transporter Family [PF00909.23, score=121.3]} {Dmel: FBgn0038309, Amt, Ammonium transporter, [Score=160, Expect=3e-47]} {Celegans: WBGene00000135, amt-3, Putative ammonium transporter 3, [Score=136, Expect=4e-38]} {RNA1509_11254, RNA1509_1200} {RNA1310_29002, RNA1509_11254} {RNA1509_11254, RNA815_7853.1}

Mlig455_069818 {REF} {Length: 1115} {TRANSSPLICED} {RNA1509_1693} {RNA1310_29002} {RNA815_7853.1}
2. MligTC455_30759 3803 79.23 Mlig455_007018, Mlig455_019153

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=5.943

 5.929 0.995 0.999 0.992 0.997 0.998 0.948

Mlig455_007018 {REF} {Length: 1111} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_1200} {RNA1310_29002} {RNA815_7853.1}

Mlig455_019153 {REF} {Length: 1071} {TRANSSPLICED} {RNA1509_1693} {RNA1310_29002} {RNA815_7853.1}
3. MligTC455_30758 1926 40.12 Mlig455_000739

Neo: -

Age: -

 5.921 0.988 0.994 0.991 0.997 0.998 0.953 Mlig455_000739 {REF} {Length: 672} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_1200} {RNA1310_29002} {RNA815_14771.2}
4. MligTC455_30762 5596 116.58 Mlig455_058999, Mlig455_068841, Mlig455_070941

Neo: -

Age: logFC(26M/2M)=0.399

 5.918 0.998 0.998 0.994 0.998 0.998 0.932

Mlig455_058999 {REF} {Length: 1070} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_1693} {RNA1310_29002} {RNA815_7853.1}

Mlig455_068841 {REF} {Length: 1111} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_1693} {RNA1310_29002} {RNA815_7853.1}

Mlig455_070941 {REF} {Length: 1067} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_1693} {RNA1310_29002} {RNA815_7853.1}
5. MligTC455_30760 5612 116.91 Mlig455_006073, Mlig455_011942, Mlig455_052693

Neo: -

Age: logFC(26M/2M)=1.042

 5.915 0.998 0.998 0.994 0.998 0.999 0.928

Mlig455_006073 {REF} {Length: 1112} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_1693} {RNA1310_29002} {RNA815_7853.1}

Mlig455_011942 {REF} {Length: 1109} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_1200, RNA1509_21131} {RNA1310_29002, RNA1509_21131} {RNA1509_21131, RNA815_7853.1}

Mlig455_052693 {REF} {Length: 1111} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_1200} {RNA1310_29002} {RNA815_7853.1}
6. MligTC455_30763 3106 64.71 Mlig455_047787, Mlig455_052629

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=1.501

 5.746 0.983 0.999 0.966 0.984 0.961 0.853

Mlig455_047787 {REF} {Length: 1115} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_1200} {RNA1310_29002} {RNA815_7853.1}

Mlig455_052629 {REF} {Length: 1115} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_1693} {RNA1310_29002} {RNA815_7853.1}
7. MligTC455_30764 1181 24.6 Mlig455_046032

Neo: -

Age: -

 3.615 0.996 0.997 0.721 0.901 - - Mlig455_046032 {REF} {Length: 1106} {TRANSSPLICED} {RNA1509_1693} {RNA1310_29002} {RNA815_7853.1}
8. MligTC455_24072 15044 313.41 Mlig455_016722

Neo: -

Age: Up-Up-Up, logFC(26M/2M)=1.151

 1.663 - 0.707 - 0.956 - - Mlig455_016722 {REF} {Length: 299} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_46177, RNA1509_48305} {RNA1310_18921, RNA1509_46177, RNA1509_48305} {RNA1509_46177, RNA1509_48305, RNA815_55354}
9. MligTC455_24071 15044 313.42 Mlig455_016654

Neo: -

Age: logFC(26M/2M)=-3.446

 1.659 - 0.703 - 0.956 - - Mlig455_016654 {REF} {Length: 294} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_28400} {RNA1310_18921} {RNA815_55354}
10. MligTC455_39212 26 0.55 Mlig455_032317

Neo: -

Age: -

 0.976 - - - - 0.976 - Mlig455_032317 {REF} {Length: 883} {RNA1509_17207} {RNA1310_664.1} {RNA815_31923}
11. MligTC455_35212 16892 351.93 Mlig455_044941

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.224

 0.97 - - - 0.970 - - Mlig455_044941 {REF} {Length: 340} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_10393, RNA1509_27766} {RNA1310_51653.1, RNA1509_10393} {RNA1509_10393, RNA815_11337}
12. MligTC455_05203 626 13.05 Mlig455_063689

Neo: -

Age: -

Region-enriched R5: 1.244/0.00217

 PPP5C 0.969 - - - - 0.969 - Mlig455_063689 {REF} {Length: 3401} {TRANSSPLICED} {Pfam: Calcineurin-like phosphoesterase [PF00149.30, score=122.4]; PPP5 TPR repeat region [PF08321.14, score=99.6]; Tetratricopeptide repeat [PF00515.30, score=40.7]; Tetratricopeptide repeat [PF07719.19, score=40.7]; Tetratricopeptide repeat [PF13428.8, score=31.9]; Tetratricopeptide repeat [PF13174.8, score=26.7]; TPR repeat [PF13414.8, score=26.4]; Tetratricopeptide repeat [PF13181.8, score=25.2]; Tetratricopeptide repeat [PF13371.8, score=19.8]; Tetratricopeptide repeat [PF13424.8, score=19.8]} {Human: ENSG00000011485, PPP5C, protein phosphatase 5 catalytic subunit, [RH, Score=634, Expect=0.0]} {Mouse: ENSMUSG00000003099, Ppp5c, protein phosphatase 5, catalytic subunit, [RH, Score=632, Expect=0.0]} {Dmel: FBgn0005777, PpD3, Protein phosphatase D3, [RH, Score=624, Expect=0.0]} {Celegans: WBGene00012665, pph-5, Serine/threonine-protein phosphatase 5, [RH, Score=582, Expect=0.0]} {Smed: dd_Smed_v6_5206_0_1, dd_Smed_v6_5206_0_1, [RH, Score=456, Expect=7e-159]} {RNA1509_15200, RNA1509_49608, RNA1509_53051, RNA1509_9274} {RNA1310_18809, RNA1509_15200, RNA1509_49608, RNA1509_53051, RNA1509_9274} {RNA1509_15200, RNA1509_49608, RNA1509_53051, RNA1509_9274, RNA815_5683}
13. MligTC455_29274 1490 31.05 Mlig455_010337

Neo: -

Age: -

 0.969 - - - - 0.969 - Mlig455_010337 {REF} {Length: 4823} {TRANSSPLICED} {RNA1509_23118, RNA1509_40105} {RNA1310_26014.1, RNA1509_23118, RNA1509_40105} {RNA1509_23118, RNA1509_40105, RNA815_13372}
14. MligTC455_30251 170 3.54 Mlig455_065306

Neo: -

Age: -

 0.967 - - - - 0.967 - Mlig455_065306 {REF} {Length: 2067} {Pfam: Protein of unknown function (DUF3421) [PF11901.10, score=28.7]} {Smed: dd_Smed_v6_2232_0_1, dd_Smed_v6_2232_0_1, [Score=46.6, Expect=2e-06]} {RNA1509_33034} {RNA1310_48677} {RNA815_43418.2}
15. MligTC455_29590 8591 178.98 Mlig455_034789

Neo: Int S/G2/M

Age: Down-Down-Up

 RPL34 0.962 - - - 0.962 - - Mlig455_034789 {REF} {Length: 504} {TRANSSPLICED} {Pfam: Ribosomal protein L34e [PF01199.20, score=134.7]} {Human: ENSG00000109475, RPL34, ribosomal protein L34, [RH, Score=124, Expect=8e-38]} {Mouse: ENSMUSG00000062006, Rpl34, ribosomal protein L34, [RH, Score=125, Expect=4e-38]} {Dmel: FBgn0039406, RpL34a, Ribosomal protein L34a, [RH, Score=152, Expect=2e-48]} {Celegans: WBGene00004448, rpl-34, Ribosomal Protein, Large subunit, [RH, Score=118, Expect=7e-36]} {Smed: dd_Smed_v6_110_0_1, dd_Smed_v6_110_0_1, [RH, Score=151, Expect=4e-49]} {RNA1509_418, RNA1509_846} {RNA1310_70667, RNA1509_846} {RNA1509_846, RNA815_30525}
16. MligTC455_30659 7438 154.97 Mlig455_008135, Mlig455_012766, Mlig455_021205, Mlig455_026385, Mlig455_035726, Mlig455_035727, Mlig455_067397, Mlig455_070688, Mlig455_070937

Neo: -

Age: Down-Up-Down

Region-enriched R8: 1.647/0.04332

 KMT5A 0.962 - - - - 0.962 -

Mlig455_008135 {REF} {Length: 3237} {RNA1509_2996} {RNA1310_18007} {RNA815_15022}

Mlig455_012766 {REF} {Length: 4660} {TRANSSPLICED} {RNA1509_2996} {RNA1310_18007} {RNA815_15022}

Mlig455_021205 {REF} {Length: 3235} {RNA1509_2996} {RNA1310_18007} {RNA815_15022}

Mlig455_026385 {REF} {Length: 2839} {TRANSSPLICED} {RNA1509_44078} {RNA1310_33930} {RNA815_15022}

Mlig455_035726 {REF} {Length: 1020} {Pfam: SET domain [PF00856.30, score=45.1]} {Human: ENSG00000183955, KMT5A, lysine methyltransferase 5A, [Score=62.4, Expect=2e-10]} {Mouse: ENSMUSG00000049327, Kmt5a, lysine methyltransferase 5A, [Score=64.7, Expect=2e-11]} {Dmel: FBgn0011474, PR-Set7, PR/SET domain containing protein 7, [Score=76.6, Expect=3e-15]} {Celegans: WBGene00004781, set-1, Histone-lysine N-methyltransferase set-1, [Score=77.0, Expect=2e-16]} {Smed: dd_Smed_v6_5677_0_1, dd_Smed_v6_5677_0_1, [Score=78.2, Expect=2e-16]} {RNA1509_2996} {RNA1310_18007} {RNA815_15022}

Mlig455_035727 {REF} {Length: 2924} {TRANSSPLICED} {RNA1509_44078} {RNA1310_31019} {RNA815_15022}

Mlig455_067397 {REF} {Length: 2535} {RNA1509_2996} {RNA1310_18007} {RNA815_15022}

Mlig455_070688 {REF} {Length: 2537} {RNA1509_2996} {RNA1310_18007, RNA1509_2996} {RNA1509_2996, RNA815_15022}

Mlig455_070937 {REF} {Length: 2433} {RNA1509_2996, RNA1509_31638} {RNA1310_18007, RNA1509_31638} {RNA1509_31638, RNA815_15022}
17. MligTC455_50138 1177 24.53 Mlig455_008691

Neo: -

Age: Down-Up-Down

Region-enriched R8: 1.511/0.01036

 CAPN3 0.961 - - - - 0.961 - Mlig455_008691 {REF} {Length: 3512} {Pfam: Calpain family cysteine protease [PF00648.23, score=409.5]; Calpain large subunit, domain III [PF01067.24, score=136.5]; EF hand [PF00036.34, score=33.6]; EF-hand domain pair [PF13499.8, score=27.9]; EF-hand domain [PF13405.8, score=26.5]; EF-hand domain pair [PF13833.8, score=26.3]} {Human: ENSG00000092529, CAPN3, calpain 3, [Score=575, Expect=0.0]; ENSG00000135773, CAPN9, calpain 9, [Score=561, Expect=0.0]} {Mouse: ENSMUSG00000031981, Capn9, calpain 9, [Score=570, Expect=0.0]; ENSMUSG00000079110, Capn3, calpain 3, [Score=560, Expect=0.0]} {Dmel: FBgn0025866, CalpB, Calpain-B, [Score=572, Expect=0.0]} {Celegans: WBGene00000542, clp-1, Calpain clp-1, [Score=444, Expect=8e-146]} {Smed: dd_Smed_v6_1971_0_3, dd_Smed_v6_1971_0_3, [Score=733, Expect=0.0]} {RNA1509_29688, RNA1509_38988, RNA1509_6401} {RNA1310_4156, RNA1509_29688, RNA1509_38988, RNA1509_6401} {RNA1509_29688, RNA1509_38988, RNA1509_6401, RNA815_1243.1}
18. MligTC455_25336 37677 784.94 Mlig455_016656, Mlig455_016723

Neo: Neoblast

Age: Down-Up-Up, logFC(26M/2M)=0.523

 0.958 - - - 0.958 - -

Mlig455_016656 {REF} {Length: 352} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_7299} {RNA1310_96662} {RNA815_41567.2}

Mlig455_016723 {REF} {Length: 352} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_2303, RNA1509_23250, RNA1509_3857, RNA1509_41408, RNA1509_5502, RNA1509_7299} {RNA1310_96662, RNA1509_2303, RNA1509_23250, RNA1509_3857, RNA1509_41408, RNA1509_5502, RNA1509_7299} {RNA1509_2303, RNA1509_23250, RNA1509_3857, RNA1509_41408, RNA1509_5502, RNA1509_7299, RNA815_41567.2}
19. MligTC455_23616 3656 76.17 Mlig455_002619

Neo: Neoblast

Age: -

 EIF3E 0.951 - - - 0.951 - - Mlig455_002619 {REF} {Length: 2641} {Pfam: eIF3 subunit 6 N terminal domain [PF09440.12, score=110.9]; PCI domain [PF01399.29, score=66.3]; Protein of unknown function (DUF3791) [PF12668.9, score=19.1]} {Human: ENSG00000104408, EIF3E, eukaryotic translation initiation factor 3 subunit E, [RH, Score=435, Expect=3e-150]} {Mouse: ENSMUSG00000022336, Eif3e, eukaryotic translation initiation factor 3, subunit E, [RH, Score=435, Expect=2e-150]} {Dmel: FBgn0025582, eIF3e, eukaryotic translation initiation factor 3 subunit e, [RH, Score=372, Expect=5e-126]} {Celegans: WBGene00001228, eif-3.E, Eukaryotic translation initiation factor 3 subunit E, [RH, Score=327, Expect=3e-108]} {Smed: dd_Smed_v6_1600_0_1, dd_Smed_v6_1600_0_1, [RH, Score=402, Expect=7e-138]} {RNA1509_1478, RNA1509_16636, RNA1509_3105} {RNA1310_11423, RNA1509_1478, RNA1509_16636, RNA1509_3105} {RNA1509_1478, RNA1509_16636, RNA1509_3105, RNA815_7794}
20. MligTC455_33664 285 5.95 Mlig455_070034

Neo: -

Age: -

 ADRA1A 0.95 - - - - 0.950 - Mlig455_070034 {REF} {Length: 2855} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=104.8]; Serpentine type 7TM GPCR chemoreceptor Srx [PF10328.11, score=37.0]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=21.3]} {Human: ENSG00000120907, ADRA1A, adrenoceptor alpha 1A, [Score=85.1, Expect=5e-17]; ENSG00000102195, GPR50, G protein-coupled receptor 50, [Score=82.4, Expect=5e-16]} {Mouse: ENSMUSG00000056380, Gpr50, G-protein-coupled receptor 50, [Score=83.2, Expect=2e-16]} {Dmel: FBgn0025631, moody, [Score=89.0, Expect=2e-18]} {Celegans: WBGene00006475, tyra-3, TYRAmine receptor, [Score=61.6, Expect=5e-10]} {Smed: dd_Smed_v6_54079_0_1, dd_Smed_v6_54079_0_1, [Score=69.7, Expect=9e-13]} {RNA1509_25254} {RNA1310_23746} {RNA815_34946}
21. MligTC455_42499 982 20.45 Mlig455_062692

Neo: Irradiation

Age: -

Region-enriched R4: 1.491/0.00202

 PPHLN1 0.95 - - - - 0.950 - Mlig455_062692 {REF} {Length: 2168} {Pfam: Transcriptional regulatory protein LGE1 [PF11488.10, score=19.5]} {Human: ENSG00000134283, PPHLN1, periphilin 1, [Score=73.9, Expect=4e-14]} {Mouse: ENSMUSG00000036167, Pphln1, periphilin 1, [Score=73.6, Expect=2e-14]} {Smed: dd_Smed_v6_3002_0_2, dd_Smed_v6_3002_0_2, [Score=73.2, Expect=3e-14]} {RNA1509_3916} {RNA1310_29650.1} {RNA815_12725}
22. MligTC455_47340 1613 33.6 Mlig455_067342

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.480

 0.95 - - - - 0.950 - Mlig455_067342 {REF} {Length: 1430} {RNA1509_11932} {RNA1310_46975.1, RNA1509_11932} {RNA1509_11932, RNA815_50642}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA