M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_31671

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_31671 799 16.64 Mlig455_007386

Neo: Irradiation

Age: -

 RAD21 Mlig455_007386 {REF} {Length: 3384} {TRANSSPLICED} {Pfam: N terminus of Rad21 / Rec8 like protein [PF04825.15, score=137.7]} {Human: ENSG00000164754, RAD21, RAD21 cohesin complex component, [RH, Score=274, Expect=5e-85]} {Mouse: ENSMUSG00000022314, Rad21, RAD21 cohesin complex component, [RH, Score=275, Expect=4e-85]} {Dmel: FBgn0260987, vtd, verthandi, [RH, Score=276, Expect=4e-85]} {Celegans: WBGene00000591, coh-1, COHesin family, [RH, Score=201, Expect=6e-58]} {Smed: dd_Smed_v6_4032_0_1, dd_Smed_v6_4032_0_1, [RH, Score=288, Expect=3e-89]} {RNA1509_59154, RNA1509_59509} {RNA1310_10984.1, RNA1509_59154, RNA1509_59509} {RNA1509_59154, RNA1509_59509, RNA815_23741}

Cumulative graph for MligTC455_31671

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.277 4.367 0.14789 0.76159
RegionR2 0.342 4.367 0.43315 0.82325
RegionR3 0.252 4.367 0.48866 0.98759
RegionR4 0.146 4.367 0.73759 1.00000
RegionR5 0.264 4.367 0.44069 0.80164
RegionR6 0.48 4.367 0.18535 0.75102
RegionR7 0.129 4.367 0.79198 1.00000
RegionR8 0.664 4.367 0.22074 0.82839

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.87 4.367 0.38661 1.00000
RegenerationR2 0.044 4.367 0.87889 1.00000
RegenerationR3 0.229 4.367 0.48334 0.85209
RegenerationR4 0.51 4.367 0.14503 0.57063
RegenerationR5 0.622 4.367 0.03142 0.29555
RegenerationR6 0.702 4.367 0.02751 0.20725
RegenerationBL 0.585 4.367 0.14721 0.45800
RegenerationTP -0.056 4.367 0.90435 1.00000


Genes with expression patterns similar to MligTC455_31671

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_31671 799 16.64 Mlig455_007386

Neo: Irradiation

Age: -

 RAD21 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_007386 {REF} {Length: 3384} {TRANSSPLICED} {Pfam: N terminus of Rad21 / Rec8 like protein [PF04825.15, score=137.7]} {Human: ENSG00000164754, RAD21, RAD21 cohesin complex component, [RH, Score=274, Expect=5e-85]} {Mouse: ENSMUSG00000022314, Rad21, RAD21 cohesin complex component, [RH, Score=275, Expect=4e-85]} {Dmel: FBgn0260987, vtd, verthandi, [RH, Score=276, Expect=4e-85]} {Celegans: WBGene00000591, coh-1, COHesin family, [RH, Score=201, Expect=6e-58]} {Smed: dd_Smed_v6_4032_0_1, dd_Smed_v6_4032_0_1, [RH, Score=288, Expect=3e-89]} {RNA1509_59154, RNA1509_59509} {RNA1310_10984.1, RNA1509_59154, RNA1509_59509} {RNA1509_59154, RNA1509_59509, RNA815_23741}
2. MligTC455_45874 2616 54.5 Mlig455_025351, Mlig455_025395

Neo: Int S/G2/M

Age: -

Region-enriched R4: 1.206/0.01823

Regeneration-enriched BL: 2.077
Regeneration-enriched R6: 1.475

 DHX15 2.487 - - - 0.952 0.735 0.800

Mlig455_025351 {REF} {Length: 3219} {Pfam: Helicase associated domain (HA2) [PF04408.25, score=76.1]; Oligonucleotide/oligosaccharide-binding (OB)-fold [PF07717.18, score=54.1]; Helicase conserved C-terminal domain [PF00271.33, score=44.9]; DEAD/DEAH box helicase [PF00270.31, score=32.8]; AAA domain [PF13245.8, score=20.0]; AAA domain [PF13401.8, score=18.9]} {Human: ENSG00000109606, DHX15, DEAH-box helicase 15, [Score=1049, Expect=0.0]} {Mouse: ENSMUSG00000029169, Dhx15, DEAH (Asp-Glu-Ala-His) box polypeptide 15, [Score=1036, Expect=0.0]} {Dmel: FBgn0033160, Dhx15, DEAH-box helicase 15, [Score=1030, Expect=0.0]} {Celegans: WBGene00018967, ddx-15, Pre-mRNA-splicing factor ATP-dependent RNA helicase ddx-15, [Score=941, Expect=0.0]} {Smed: dd_Smed_v6_2043_0_1, dd_Smed_v6_2043_0_1, [Score=1092, Expect=0.0]} {RNA1509_2301} {RNA1310_4345.1} {RNA815_408.1}

Mlig455_025395 {REF} {Length: 2952} {TRANSSPLICED} {Pfam: Oligonucleotide/oligosaccharide-binding (OB)-fold [PF07717.18, score=82.3]; Helicase associated domain (HA2) [PF04408.25, score=80.5]; Helicase conserved C-terminal domain [PF00271.33, score=44.8]; DEAD/DEAH box helicase [PF00270.31, score=32.7]; AAA domain [PF13245.8, score=20.0]; AAA domain [PF13401.8, score=18.8]} {Human: ENSG00000109606, DHX15, DEAH-box helicase 15, [RH, Score=1192, Expect=0.0]} {Mouse: ENSMUSG00000029169, Dhx15, DEAH (Asp-Glu-Ala-His) box polypeptide 15, [RH, Score=1191, Expect=0.0]} {Dmel: FBgn0033160, Dhx15, DEAH-box helicase 15, [RH, Score=1186, Expect=0.0]} {Celegans: WBGene00018967, ddx-15, Pre-mRNA-splicing factor ATP-dependent RNA helicase ddx-15, [RH, Score=1094, Expect=0.0]} {Smed: dd_Smed_v6_2043_0_1, dd_Smed_v6_2043_0_1, [RH, Score=1235, Expect=0.0]} {RNA1509_2301} {RNA1310_4345.2} {RNA815_408.2}
3. MligTC455_27955 539 11.23 Mlig455_050133

Neo: -

Age: -

Regeneration-enriched BL: 2.316
Regeneration-enriched R6: 1.860

 KLHDC8B 1.885 - - - 0.959 - 0.926 Mlig455_050133 {REF} {Length: 2014} {TRANSSPLICED} {Pfam: Kelch motif [PF01344.27, score=121.0]; Kelch motif [PF13964.8, score=114.7]; Galactose oxidase, central domain [PF13418.8, score=80.3]; Galactose oxidase, central domain [PF13415.8, score=76.8]; Kelch motif [PF07646.17, score=50.6]; Kelch motif [PF13854.8, score=41.2]; Protein of unknown function (DUF1668) [PF07893.15, score=28.3]} {Human: ENSG00000185909, KLHDC8B, kelch domain containing 8B, [RH, Score=162, Expect=4e-46]} {Mouse: ENSMUSG00000032609, Klhdc8b, kelch domain containing 8B, [RH, Score=162, Expect=2e-46]} {Dmel: FBgn0040230, dbo, diablo, [Score=67.4, Expect=6e-12]} {Celegans: WBGene00008269, C53A5.11, [Score=57.8, Expect=4e-09]} {Smed: dd_Smed_v6_2508_0_1, dd_Smed_v6_2508_0_1, [RH, Score=160, Expect=3e-46]} {RNA1509_20477} {RNA1310_11616, RNA1509_20477} {RNA1509_20477, RNA815_11073}
4. MligTC455_54314 1737 36.2 Mlig455_031145

Neo: Irradiation

Age: logFC(26M/2M)=0.240

Region-enriched R5: 1.323/0.00010

 CEP95 1.847 - - - 0.972 - 0.875 Mlig455_031145 {REF} {Length: 2001} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF5745) [PF19016.2, score=71.0]} {Human: ENSG00000258890, CEP95, centrosomal protein 95, [Score=82.0, Expect=5e-16]} {Mouse: ENSMUSG00000018372, Cep95, centrosomal protein 95, [Score=79.3, Expect=2e-15]} {Smed: dd_Smed_v6_8515_0_1, dd_Smed_v6_8515_0_1, [Score=73.9, Expect=5e-14]} {RNA1509_4062, RNA1509_51472} {RNA1310_13760, RNA1509_4062, RNA1509_51472} {RNA1509_4062, RNA1509_51472, RNA815_19737}
5. MligTC455_54315 1719 35.82 Mlig455_031154

Neo: Irradiation

Age: -

Region-enriched R5: 1.397/0.00013

 CEP95 1.834 - - - 0.960 - 0.874 Mlig455_031154 {REF} {Length: 1994} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF5745) [PF19016.2, score=70.0]} {Human: ENSG00000258890, CEP95, centrosomal protein 95, [Score=85.1, Expect=5e-17]} {Mouse: ENSMUSG00000018372, Cep95, centrosomal protein 95, [Score=83.6, Expect=9e-17]} {Smed: dd_Smed_v6_8515_0_1, dd_Smed_v6_8515_0_1, [Score=76.3, Expect=1e-14]} {RNA1509_4062} {RNA1310_13760} {RNA815_19737}
6. MligTC455_15404 774 16.13 Mlig455_015252

Neo: Irradiation

Age: -

 WBP2NL 1.74 - - - 0.955 - 0.785 Mlig455_015252 {REF} {Length: 1820} {Human: ENSG00000183066, WBP2NL, WBP2 N-terminal like, [Score=50.1, Expect=5e-07]} {RNA1509_35087, RNA1509_43246, RNA1509_49119} {RNA1310_35993, RNA1509_35087, RNA1509_43246, RNA1509_49119} {RNA1509_35087, RNA1509_43246, RNA1509_49119, RNA815_16196.1}
7. MligTC455_37797 1708 35.59 Mlig455_052264, Mlig455_052350

Neo: Neoblast, stringent

Age: logFC(26M/2M)=-0.294

Regeneration-enriched BL: 1.878
Regeneration-enriched R6: 1.533

 LRWD1 0.977 - - - 0.977 - -

Mlig455_052264 {REF} {Length: 5281} {TRANSSPLICED} {Pfam: NAB conserved region 2 (NCD2) [PF04905.15, score=67.7]; Leucine rich repeat [PF13855.8, score=30.0]; WD domain, G-beta repeat [PF00400.34, score=24.3]; Leucine Rich repeats (2 copies) [PF12799.9, score=22.5]} {Human: ENSG00000161036, LRWD1, leucine rich repeats and WD repeat domain containing 1, [RH, Score=206, Expect=3e-55]} {Mouse: ENSMUSG00000029703, Lrwd1, leucine-rich repeats and WD repeat domain containing 1, [RH, Score=211, Expect=6e-57]} {Dmel: FBgn0032391, escl, [Score=57.8, Expect=6e-08]} {Celegans: WBGene00003107, mab-10, [RH, Score=55.1, Expect=4e-07]} {Smed: dd_Smed_v6_2942_0_1, dd_Smed_v6_2942_0_1, [RH, Score=437, Expect=3e-127]} {RNA1509_1906} {RNA1310_947} {RNA815_870}

Mlig455_052350 {REF} {Length: 5956} {TRANSSPLICED} {Pfam: NAB conserved region 2 (NCD2) [PF04905.15, score=67.8]; Leucine rich repeat [PF13855.8, score=30.0]; WD domain, G-beta repeat [PF00400.34, score=24.3]; Leucine Rich repeats (2 copies) [PF12799.9, score=22.5]} {Human: ENSG00000161036, LRWD1, leucine rich repeats and WD repeat domain containing 1, [RH, Score=206, Expect=3e-55]} {Mouse: ENSMUSG00000029703, Lrwd1, leucine-rich repeats and WD repeat domain containing 1, [RH, Score=211, Expect=6e-57]} {Dmel: FBgn0032391, escl, [Score=57.8, Expect=6e-08]} {Celegans: WBGene00003107, mab-10, [RH, Score=55.1, Expect=4e-07]} {Smed: dd_Smed_v6_2942_0_1, dd_Smed_v6_2942_0_1, [RH, Score=437, Expect=3e-127]} {RNA1509_1906} {RNA1310_947, RNA1509_1906} {RNA1509_1906, RNA815_870}
8. MligTC455_44305 2330 48.55 Mlig455_002521

Neo: -

Age: -

 PABPN1 0.97 - - - 0.970 - - Mlig455_002521 {REF} {Length: 1194} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=64.1]} {Human: ENSG00000100836, PABPN1, poly(A) binding protein nuclear 1, [RH, Score=186, Expect=1e-57]; ENSG00000258643, BCL2L2-PABPN1, BCL2L2-PABPN1 readthrough, [RH, Score=181, Expect=2e-55]} {Mouse: ENSMUSG00000022194, Pabpn1, poly(A) binding protein, nuclear 1, [RH, Score=184, Expect=2e-57]; ENSMUSG00000092232, Gm20521, predicted gene 20521, [RH, Score=180, Expect=2e-55]} {Dmel: FBgn0005648, Pabp2, [RH, Score=218, Expect=7e-72]} {Celegans: WBGene00003904, pabp-2, PolyA Binding Protein (Nuclear), [RH, Score=157, Expect=4e-48]} {Smed: dd_Smed_v6_2924_0_1, dd_Smed_v6_2924_0_1, [RH, Score=150, Expect=2e-45]} {RNA1509_10120, RNA1509_16224} {RNA1310_27727, RNA1509_10120, RNA1509_16224} {RNA1509_10120, RNA1509_16224, RNA815_12820}
9. MligTC455_44892 642 13.37 Mlig455_048764

Neo: -

Age: logFC(26M/2M)=0.308

 SMARCC2 0.968 - - - 0.968 - - Mlig455_048764 {REF} {Length: 4246} {Pfam: SWIRM-associated domain at the C-terminal [PF16498.7, score=52.9]; SWIRM-associated region 1 [PF16495.7, score=25.2]} {Human: ENSG00000139613, SMARCC2, SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2, [Score=108, Expect=6e-24]} {Mouse: ENSMUSG00000025369, Smarcc2, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2, [Score=110, Expect=2e-24]} {Dmel: FBgn0002783, mor, moira, [Score=89.0, Expect=6e-18]} {Celegans: WBGene00004203, swsn-1, SWI/SNF nucleosome remodeling complex component; SWI3-like protein, [Score=94.4, Expect=7e-20]} {Smed: dd_Smed_v6_1804_0_1, dd_Smed_v6_1804_0_1, [Score=90.1, Expect=2e-18]} {RNA1509_49479} {RNA1310_2189} {RNA815_8217}
10. MligTC455_43209 379 7.89 Mlig455_016249

Neo: -

Age: Down-Up-Down

 TAF9 0.966 - - - 0.966 - - Mlig455_016249 {REF} {Length: 2000} {TRANSSPLICED} {Pfam: Transcription initiation factor IID, 31kD subunit [PF02291.17, score=132.0]; CENP-S protein [PF15630.8, score=31.7]; Bromodomain associated [PF07524.15, score=23.9]; Centromere kinetochore component CENP-T histone fold [PF15511.8, score=23.6]} {Human: ENSG00000276463, TAF9, TATA-box binding protein associated factor 9, [RH, Score=135, Expect=6e-39]; ENSG00000273841, TAF9, TATA-box binding protein associated factor 9, [RH, Score=135, Expect=6e-39]; ENSG00000187325, TAF9B, TATA-box binding protein associated factor 9b, [RH, Score=134, Expect=2e-38]} {Mouse: ENSMUSG00000078941, Ak6, adenylate kinase 6, [RH, Score=135, Expect=4e-39]; ENSMUSG00000052293, Taf9, TATA-box binding protein associated factor 9, [RH, Score=135, Expect=4e-39]; ENSMUSG00000047242, Taf9b, TATA-box binding protein associated factor 9B, [RH, Score=132, Expect=4e-38]} {Dmel: FBgn0000617, e(y)1, enhancer of yellow 1, [RH, Score=128, Expect=4e-36]} {RNA1509_26456, RNA1509_41155} {RNA1310_14966.2, RNA1509_26456, RNA1509_41155} {RNA1509_26456, RNA1509_41155, RNA815_17644}
11. MligTC455_30214 590 12.28 Mlig455_006816

Neo: -

Age: -

 PIF1 0.964 - - - 0.964 - - Mlig455_006816 {REF} {Length: 9659} {Pfam: PIF1-like helicase [PF05970.16, score=336.9]; AAA domain [PF13604.8, score=49.7]; AAA domain [PF13245.8, score=21.1]} {Human: ENSG00000140451, PIF1, PIF1 5'-to-3' DNA helicase, [Score=90.1, Expect=1e-18]} {Mouse: ENSMUSG00000041064, Pif1, PIF1 5'-to-3' DNA helicase, [Score=85.9, Expect=2e-17]} {Dmel: FBgn0031540, Pif1, Pif1 ortholog, [Score=92.8, Expect=1e-19]} {Celegans: WBGene00019136, F59H6.5, [Score=217, Expect=1e-61]} {Smed: dd_Smed_v6_16842_0_1, dd_Smed_v6_16842_0_1, [Score=85.9, Expect=9e-18]} {RNA1509_7353} {RNA1310_1123.1} {RNA815_252.1}
12. MligTC455_41069 296 6.17 Mlig455_035980

Neo: Irradiation

Age: Down-Up-Down, logFC(26M/2M)=-0.378

 0.962 - - - 0.962 - - Mlig455_035980 {REF} {Length: 3621} {RNA1509_22396, RNA1509_50430} {RNA1310_14148.1, RNA1509_50430} {RNA1509_50430, RNA815_10177}
13. MligTC455_38901 1001 20.86 Mlig455_016893

Neo: -

Age: -

 METTL13 0.961 - - - - - 0.961 Mlig455_016893 {REF} {Length: 2256} {TRANSSPLICED} {Pfam: Methyltransferase domain [PF08241.14, score=43.6]; Methyltransferase domain [PF13649.8, score=43.0]; Methyltransferase domain [PF13847.8, score=35.8]; Methyltransferase domain [PF08242.14, score=30.1]; Methyltransferase small domain [PF05175.16, score=24.2]; Methyltransferase domain [PF13679.8, score=22.4]} {Human: ENSG00000010165, METTL13, methyltransferase like 13, [RH, Score=236, Expect=1e-67]} {Mouse: ENSMUSG00000026694, Mettl13, methyltransferase like 13, [RH, Score=248, Expect=3e-72]} {Dmel: FBgn0032873, CG2614, [RH, Score=172, Expect=2e-45]} {Celegans: WBGene00015282, C01B10.8, [RH, Score=149, Expect=7e-38]} {Smed: dd_Smed_v6_8741_0_1, dd_Smed_v6_8741_0_1, [RH, Score=186, Expect=1e-50]} {RNA1509_56015} {RNA1310_11646.2, RNA1509_56015} {RNA1509_56015, RNA815_4084.1}
14. MligTC455_41070 310 6.46 Mlig455_047644

Neo: Irradiation

Age: Down-Up-Down

 0.961 - - - 0.961 - - Mlig455_047644 {REF} {Length: 3607} {RNA1509_22396, RNA1509_50089} {RNA1310_14148.1, RNA1509_22396, RNA1509_50089} {RNA1509_22396, RNA1509_50089, RNA815_10177}
15. MligTC455_45788 733 15.27 Mlig455_022011

Neo: Int S/G2/M

Age: Down-Down-Up

Regeneration-upregulated R6: 1.534

Regeneration-enriched R6: 1.534

 0.96 - - - 0.960 - - Mlig455_022011 {REF} {Length: 683} {Pfam: Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term [PF11718.10, score=35.9]} {Dmel: FBgn0261065, Cpsf73, Cleavage and polyadenylation specificity factor 73, [Score=58.5, Expect=8e-11]} {Smed: dd_Smed_v6_2005_0_1, dd_Smed_v6_2005_0_1, [Score=73.9, Expect=2e-16]} {RNA1509_5278} {RNA1310_8263} {RNA815_3205}
16. MligTC455_38902 1000 20.84 Mlig455_016999

Neo: -

Age: -

 METTL13 0.958 - - - - - 0.958 Mlig455_016999 {REF} {Length: 2194} {TRANSSPLICED} {Pfam: Methyltransferase domain [PF08241.14, score=43.6]; Methyltransferase domain [PF13649.8, score=42.8]; Methyltransferase domain [PF13847.8, score=35.9]; Methyltransferase domain [PF08242.14, score=30.2]; Methyltransferase small domain [PF05175.16, score=24.7]; Methyltransferase domain [PF13679.8, score=22.5]} {Human: ENSG00000010165, METTL13, methyltransferase like 13, [RH, Score=236, Expect=8e-68]} {Mouse: ENSMUSG00000026694, Mettl13, methyltransferase like 13, [RH, Score=248, Expect=2e-72]} {Dmel: FBgn0032873, CG2614, [RH, Score=172, Expect=1e-45]} {Celegans: WBGene00015282, C01B10.8, [RH, Score=149, Expect=7e-38]} {Smed: dd_Smed_v6_8741_0_1, dd_Smed_v6_8741_0_1, [RH, Score=186, Expect=9e-51]} {RNA1509_11573} {RNA1310_11646.1} {RNA815_4084.1}
17. MligTC455_20514 1263 26.31 Mlig455_008860

Neo: Int S/G2/M

Age: -

Region-enriched R5: 1.491/0.00005

Regeneration-upregulated BL: 1.687

Regeneration-enriched BL: 1.687

 RPA1 0.957 - - - 0.957 - - Mlig455_008860 {REF} {Length: 2265} {TRANSSPLICED} {Pfam: Replication factor-A C terminal domain [PF08646.12, score=145.1]; Replication protein A OB domain [PF16900.7, score=113.7]; Replication factor-A protein 1, N-terminal domain [PF04057.14, score=63.4]; OB-fold nucleic acid binding domain [PF01336.27, score=53.1]; Cell division control protein 24, OB domain 3 [PF17244.4, score=31.4]} {Human: ENSG00000132383, RPA1, replication protein A1, [Score=456, Expect=2e-153]} {Mouse: ENSMUSG00000000751, Rpa1, replication protein A1, [Score=452, Expect=9e-152]} {Dmel: FBgn0010173, RpA-70, Replication Protein A 70, [Score=391, Expect=1e-128]} {Celegans: WBGene00017546, rpa-1, Probable replication factor A 73 kDa subunit, [Score=204, Expect=2e-57]} {Smed: dd_Smed_v6_3342_0_1, dd_Smed_v6_3342_0_1, [Score=399, Expect=1e-132]} {RNA1509_4117} {RNA1310_8147} {RNA815_2777}
18. MligTC455_36435 206 4.3 Mlig455_063032

Neo: -

Age: -

 RTL1 0.957 - - - 0.957 - - Mlig455_063032 {REF} {Length: 7806} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=45.6]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=24.6]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=65.9, Expect=1e-10]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=108, Expect=1e-24]} {RNA1509_11174} {RNA1310_21447} {RNA815_26029.1}
19. MligTC455_18751 300 6.26 Mlig455_011845

Neo: Irradiation

Age: logFC(26M/2M)=0.450

 0.956 - - - 0.956 - - Mlig455_011845 {REF} {Length: 1955} {RNA1509_21437} {RNA1310_70292.3} {RNA815_45917.2}
20. MligTC455_46945 992 20.68 Mlig455_025688

Neo: Neoblast, stringent

Age: Down-Down-Up

Region-enriched R6: 3.040/0.00002

Regeneration-upregulated BL: 2.709

Regeneration-enriched BL: 2.709

 RREB1 0.956 - - - 0.956 - - Mlig455_025688 {REF} {Length: 2364} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=50.3]; C2H2-type zinc finger [PF13894.8, score=45.1]; Zinc-finger double domain [PF13465.8, score=38.0]; Drought induced 19 protein (Di19), zinc-binding [PF05605.14, score=21.3]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=19.1]} {Human: ENSG00000124782, RREB1, ras responsive element binding protein 1, [RH, Score=104, Expect=1e-22]} {Mouse: ENSMUSG00000039087, Rreb1, ras responsive element binding protein 1, [RH, Score=101, Expect=9e-22]} {Dmel: FBgn0003053, peb, pebbled, [Score=95.5, Expect=5e-20]} {Celegans: WBGene00018567, F47E1.3, [Score=64.3, Expect=1e-10]} {Smed: dd_Smed_v6_10103_0_1, dd_Smed_v6_10103_0_1, [RH, Score=122, Expect=9e-30]} {RNA1509_41001, RNA1509_53538} {RNA1310_12985.1, RNA1509_41001, RNA1509_53538} {RNA1509_41001, RNA1509_53538, RNA815_27232}
21. MligTC455_37441 157 3.28 Mlig455_055697

Neo: -

Age: -

 0.955 - - - 0.955 - - Mlig455_055697 {REF} {Length: 2393} {RNA1509_10526} {RNA1310_31711} {RNA815_17406}
22. MligTC455_37126 1036 21.59 Mlig455_059720

Neo: -

Age: -

 POLR1A 0.954 - - - 0.954 - - Mlig455_059720 {REF} {Length: 1092} {Pfam: RNA polymerase Rpb1, domain 5 [PF04998.19, score=52.0]} {Human: ENSG00000068654, POLR1A, RNA polymerase I subunit A, [Score=120, Expect=2e-30]} {Mouse: ENSMUSG00000049553, Polr1a, polymerase (RNA) I polypeptide A, [Score=120, Expect=1e-30]} {Dmel: FBgn0019938, RpI1, RNA polymerase I subunit, [Score=117, Expect=1e-29]} {Celegans: WBGene00012999, rpoa-1, RNA POlymerase I (A) subunit, [Score=107, Expect=3e-26]} {Smed: dd_Smed_v6_9059_1_1, dd_Smed_v6_9059_1_1, [RH, Score=101, Expect=1e-27]} {RNA1509_15567} {RNA1310_628.3} {RNA815_11233}
23. MligTC455_26503 114 2.37 Mlig455_055217

Neo: Int S/G2/M

Age: -

Region-enriched R4: 7.372/0.00058

 CPSF6 0.953 - - - 0.953 - - Mlig455_055217 {REF} {Length: 5089} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=26.5]} {Human: ENSG00000111605, CPSF6, cleavage and polyadenylation specific factor 6, [RH, Score=139, Expect=1e-34]} {Mouse: ENSMUSG00000055531, Cpsf6, cleavage and polyadenylation specific factor 6, [RH, Score=139, Expect=2e-34]} {Dmel: FBgn0035872, CG7185, [RH, Score=133, Expect=3e-32]} {Celegans: WBGene00008362, cfim-2, Cleavage Factor IM (CFIm) homolog, [RH, Score=96.7, Expect=7e-21]} {Smed: dd_Smed_v6_4839_0_1, dd_Smed_v6_4839_0_1, [RH, Score=152, Expect=2e-39]} {RNA1509_8357} {RNA1310_5998} {RNA815_15488}
24. MligTC455_28441 1828 38.08 Mlig455_026545

Neo: Int S/G2/M

Age: -

 PSMA1 0.95 - - - - - 0.950 Mlig455_026545 {REF} {Length: 1880} {TRANSSPLICED} {Pfam: Proteasome subunit [PF00227.28, score=149.8]; Proteasome subunit A N-terminal signature [PF10584.11, score=45.5]} {Human: ENSG00000129084, PSMA1, proteasome subunit alpha 1, [RH, Score=319, Expect=7e-110]} {Mouse: ENSMUSG00000030751, Psma1, proteasome (prosome, macropain) subunit, alpha type 1, [RH, Score=320, Expect=2e-110]} {Dmel: FBgn0250843, Prosalpha6, Proteasome alpha6 subunit, [RH, Score=259, Expect=2e-86]} {Celegans: WBGene00003927, pas-6, Proteasome subunit alpha type-1, [RH, Score=264, Expect=1e-88]} {Smed: dd_Smed_v6_1278_0_1, dd_Smed_v6_1278_0_1, [RH, Score=303, Expect=1e-103]} {RNA1509_55782, RNA1509_6111} {RNA1310_15113.1, RNA1509_55782, RNA1509_6111} {RNA1509_55782, RNA1509_6111, RNA815_6382}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA