Data search
Results for MligTC455_26503
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_26503 | 114 | 2.37 | Mlig455_055217 | Neo: Int S/G2/M Age: - Region-enriched R4: 7.372/0.00058 |
CPSF6 | Mlig455_055217 {REF} {Length: 5089} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=26.5]} {Human: ENSG00000111605, CPSF6, cleavage and polyadenylation specific factor 6, [RH, Score=139, Expect=1e-34]} {Mouse: ENSMUSG00000055531, Cpsf6, cleavage and polyadenylation specific factor 6, [RH, Score=139, Expect=2e-34]} {Dmel: FBgn0035872, CG7185, [RH, Score=133, Expect=3e-32]} {Celegans: WBGene00008362, cfim-2, Cleavage Factor IM (CFIm) homolog, [RH, Score=96.7, Expect=7e-21]} {Smed: dd_Smed_v6_4839_0_1, dd_Smed_v6_4839_0_1, [RH, Score=152, Expect=2e-39]} {RNA1509_8357} {RNA1310_5998} {RNA815_15488} |
Cumulative graph for MligTC455_26503
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -3.315 | 1.911 | 0.99980 | 1.00000 | |
| RegionR2 | -4.439 | 1.911 | 0.99974 | 1.00000 | |
| RegionR3 | -1.17 | 1.911 | 0.99977 | 1.00000 | |
| RegionR4 | 7.372 | 1.911 | 0.00003 | 0.00058 | |
| RegionR5 | 3.639 | 1.911 | 0.01449 | 0.07621 | |
| RegionR6 | 1.419 | 1.911 | 0.26666 | 0.85478 | |
| RegionR7 | -1.749 | 1.911 | 1.00000 | 1.00000 | |
| RegionR8 | -1.757 | 1.911 | 0.99984 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | 6.643 | 1.911 | 0.27907 | 0.97979 | |
| RegenerationR2 | 5.106 | 1.911 | 0.00023 | 0.01971 | |
| RegenerationR3 | 3.168 | 1.911 | 0.04223 | 0.35978 | |
| RegenerationR4 | -0.151 | 1.911 | 0.81303 | 0.99046 | |
| RegenerationR5 | 0.968 | 1.911 | 0.44008 | 0.82432 | |
| RegenerationR6 | 2.76 | 1.911 | 0.05416 | 0.29155 | |
| RegenerationBL | 4.087 | 1.911 | 0.03118 | 0.19747 | |
| RegenerationTP | 2.525 | 1.911 | 0.33928 | 0.78274 |
Genes with expression patterns similar to MligTC455_26503
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_26503 | 114 | 2.37 | Mlig455_055217 | Neo: Int S/G2/M Age: - Region-enriched R4: 7.372/0.00058 |
CPSF6 | 3 | - | - | - | 1.000 | 1.000 | 1.000 | Mlig455_055217 {REF} {Length: 5089} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=26.5]} {Human: ENSG00000111605, CPSF6, cleavage and polyadenylation specific factor 6, [RH, Score=139, Expect=1e-34]} {Mouse: ENSMUSG00000055531, Cpsf6, cleavage and polyadenylation specific factor 6, [RH, Score=139, Expect=2e-34]} {Dmel: FBgn0035872, CG7185, [RH, Score=133, Expect=3e-32]} {Celegans: WBGene00008362, cfim-2, Cleavage Factor IM (CFIm) homolog, [RH, Score=96.7, Expect=7e-21]} {Smed: dd_Smed_v6_4839_0_1, dd_Smed_v6_4839_0_1, [RH, Score=152, Expect=2e-39]} {RNA1509_8357} {RNA1310_5998} {RNA815_15488} |
| 2. | MligTC455_19032 | 289 | 6.02 | Mlig455_039183 | Neo: - Age: - |
KAT7 | 1.841 | - | - | - | 0.870 | 0.971 | - | Mlig455_039183 {REF} {Length: 1908} {TRANSSPLICED} {Pfam: MOZ/SAS family [PF01853.20, score=236.2]; MYST family zinc finger domain [PF17772.3, score=42.3]; Zinc finger, C2HC type [PF01530.20, score=34.8]} {Human: ENSG00000136504, KAT7, lysine acetyltransferase 7, [RH, Score=322, Expect=2e-107]} {Mouse: ENSMUSG00000038909, Kat7, K(lysine) acetyltransferase 7, [RH, Score=323, Expect=2e-106]} {Dmel: FBgn0028387, chm, chameau, [Score=290, Expect=8e-91]} {Celegans: WBGene00007029, mys-1, Histone acetyltransferase Tip60 homolog, [Score=256, Expect=1e-81]} {Smed: dd_Smed_v6_4706_1_4, dd_Smed_v6_4706_1_4, [Score=233, Expect=2e-72]} {RNA1509_35665} {RNA1310_17590, RNA1509_35665} {RNA1509_35665, RNA815_13639.1} |
| 3. | MligTC455_32335 | 202 | 4.21 | Mlig455_017656 | Neo: - Age: Up-Down-Down |
FXR1 | 1.839 | - | - | - | 0.960 | - | 0.879 | Mlig455_017656 {REF} {Length: 3938} {Pfam: KH domain [PF00013.31, score=61.5]; FMRP KH0 domain [PF17904.3, score=29.8]; Agenet domain [PF05641.14, score=22.2]} {Human: ENSG00000114416, FXR1, FMR1 autosomal homolog 1, [RH, Score=275, Expect=6e-84]} {Mouse: ENSMUSG00000027680, Fxr1, fragile X mental retardation gene 1, autosomal homolog, [RH, Score=277, Expect=1e-84]} {Dmel: FBgn0028734, Fmr1, [RH, Score=237, Expect=3e-69]} {Smed: dd_Smed_v6_2105_0_1, dd_Smed_v6_2105_0_1, [RH, Score=216, Expect=6e-63]} {RNA1509_38590} {RNA1310_3140.1} {RNA815_2441} |
| 4. | MligTC455_47208 | 1083 | 22.56 | Mlig455_034771 | Neo: Int S/G2/M Age: - Regeneration-upregulated BL: 1.670 Regeneration-enriched BL: 1.670 |
E2F4 | 0.965 | - | - | - | 0.965 | - | - | Mlig455_034771 {REF} {Length: 2224} {TRANSSPLICED} {Pfam: E2F/DP family winged-helix DNA-binding domain [PF02319.22, score=89.0]; E2F transcription factor CC-MB domain [PF16421.7, score=79.6]} {Human: ENSG00000205250, E2F4, E2F transcription factor 4, [RH, Score=207, Expect=2e-62]} {Mouse: ENSMUSG00000014859, E2f4, E2F transcription factor 4, [RH, Score=206, Expect=4e-62]} {Dmel: FBgn0011766, E2f1, E2F transcription factor 1, [RH, Score=107, Expect=5e-25]} {Celegans: WBGene00001161, efl-1, E2F-like (Mammalian transcription factor); EFL-1, [RH, Score=124, Expect=2e-32]} {Smed: dd_Smed_v6_3130_0_1, dd_Smed_v6_3130_0_1, [RH, Score=110, Expect=3e-28]} {RNA1509_11778, RNA1509_30431, RNA1509_39358} {RNA1310_22021, RNA1509_11778, RNA1509_30431, RNA1509_39358} {RNA1509_11778, RNA1509_30431, RNA1509_39358, RNA815_22661} |
| 5. | MligTC455_44892 | 642 | 13.37 | Mlig455_048764 | Neo: - Age: logFC(26M/2M)=0.308 |
SMARCC2 | 0.96 | - | - | - | 0.960 | - | - | Mlig455_048764 {REF} {Length: 4246} {Pfam: SWIRM-associated domain at the C-terminal [PF16498.7, score=52.9]; SWIRM-associated region 1 [PF16495.7, score=25.2]} {Human: ENSG00000139613, SMARCC2, SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2, [Score=108, Expect=6e-24]} {Mouse: ENSMUSG00000025369, Smarcc2, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2, [Score=110, Expect=2e-24]} {Dmel: FBgn0002783, mor, moira, [Score=89.0, Expect=6e-18]} {Celegans: WBGene00004203, swsn-1, SWI/SNF nucleosome remodeling complex component; SWI3-like protein, [Score=94.4, Expect=7e-20]} {Smed: dd_Smed_v6_1804_0_1, dd_Smed_v6_1804_0_1, [Score=90.1, Expect=2e-18]} {RNA1509_49479} {RNA1310_2189} {RNA815_8217} |
| 6. | MligTC455_20514 | 1263 | 26.31 | Mlig455_008860 | Neo: Int S/G2/M Age: - Region-enriched R5: 1.491/0.00005 Regeneration-upregulated BL: 1.687 Regeneration-enriched BL: 1.687 |
RPA1 | 0.959 | - | - | - | 0.959 | - | - | Mlig455_008860 {REF} {Length: 2265} {TRANSSPLICED} {Pfam: Replication factor-A C terminal domain [PF08646.12, score=145.1]; Replication protein A OB domain [PF16900.7, score=113.7]; Replication factor-A protein 1, N-terminal domain [PF04057.14, score=63.4]; OB-fold nucleic acid binding domain [PF01336.27, score=53.1]; Cell division control protein 24, OB domain 3 [PF17244.4, score=31.4]} {Human: ENSG00000132383, RPA1, replication protein A1, [Score=456, Expect=2e-153]} {Mouse: ENSMUSG00000000751, Rpa1, replication protein A1, [Score=452, Expect=9e-152]} {Dmel: FBgn0010173, RpA-70, Replication Protein A 70, [Score=391, Expect=1e-128]} {Celegans: WBGene00017546, rpa-1, Probable replication factor A 73 kDa subunit, [Score=204, Expect=2e-57]} {Smed: dd_Smed_v6_3342_0_1, dd_Smed_v6_3342_0_1, [Score=399, Expect=1e-132]} {RNA1509_4117} {RNA1310_8147} {RNA815_2777} |
| 7. | MligTC455_37126 | 1036 | 21.59 | Mlig455_059720 | Neo: - Age: - |
POLR1A | 0.959 | - | - | - | 0.959 | - | - | Mlig455_059720 {REF} {Length: 1092} {Pfam: RNA polymerase Rpb1, domain 5 [PF04998.19, score=52.0]} {Human: ENSG00000068654, POLR1A, RNA polymerase I subunit A, [Score=120, Expect=2e-30]} {Mouse: ENSMUSG00000049553, Polr1a, polymerase (RNA) I polypeptide A, [Score=120, Expect=1e-30]} {Dmel: FBgn0019938, RpI1, RNA polymerase I subunit, [Score=117, Expect=1e-29]} {Celegans: WBGene00012999, rpoa-1, RNA POlymerase I (A) subunit, [Score=107, Expect=3e-26]} {Smed: dd_Smed_v6_9059_1_1, dd_Smed_v6_9059_1_1, [RH, Score=101, Expect=1e-27]} {RNA1509_15567} {RNA1310_628.3} {RNA815_11233} |
| 8. | MligTC455_26561 | 64 | 1.32 | Mlig455_070940 | Neo: - Age: - |
0.956 | - | - | - | - | - | 0.956 | Mlig455_070940 {REF} {Length: 1652} {TRANSSPLICED} {Pfam: Protein of unknown function (DUF3096) [PF11295.10, score=23.9]} {RNA1509_55741} {RNA1310_34586} {RNA815_56684} | |
| 9. | MligTC455_44305 | 2330 | 48.55 | Mlig455_002521 | Neo: - Age: - |
PABPN1 | 0.955 | - | - | - | 0.955 | - | - | Mlig455_002521 {REF} {Length: 1194} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=64.1]} {Human: ENSG00000100836, PABPN1, poly(A) binding protein nuclear 1, [RH, Score=186, Expect=1e-57]; ENSG00000258643, BCL2L2-PABPN1, BCL2L2-PABPN1 readthrough, [RH, Score=181, Expect=2e-55]} {Mouse: ENSMUSG00000022194, Pabpn1, poly(A) binding protein, nuclear 1, [RH, Score=184, Expect=2e-57]; ENSMUSG00000092232, Gm20521, predicted gene 20521, [RH, Score=180, Expect=2e-55]} {Dmel: FBgn0005648, Pabp2, [RH, Score=218, Expect=7e-72]} {Celegans: WBGene00003904, pabp-2, PolyA Binding Protein (Nuclear), [RH, Score=157, Expect=4e-48]} {Smed: dd_Smed_v6_2924_0_1, dd_Smed_v6_2924_0_1, [RH, Score=150, Expect=2e-45]} {RNA1509_10120, RNA1509_16224} {RNA1310_27727, RNA1509_10120, RNA1509_16224} {RNA1509_10120, RNA1509_16224, RNA815_12820} |
| 10. | MligTC455_31671 | 799 | 16.64 | Mlig455_007386 | Neo: Irradiation Age: - |
RAD21 | 0.953 | - | - | - | 0.953 | - | - | Mlig455_007386 {REF} {Length: 3384} {TRANSSPLICED} {Pfam: N terminus of Rad21 / Rec8 like protein [PF04825.15, score=137.7]} {Human: ENSG00000164754, RAD21, RAD21 cohesin complex component, [RH, Score=274, Expect=5e-85]} {Mouse: ENSMUSG00000022314, Rad21, RAD21 cohesin complex component, [RH, Score=275, Expect=4e-85]} {Dmel: FBgn0260987, vtd, verthandi, [RH, Score=276, Expect=4e-85]} {Celegans: WBGene00000591, coh-1, COHesin family, [RH, Score=201, Expect=6e-58]} {Smed: dd_Smed_v6_4032_0_1, dd_Smed_v6_4032_0_1, [RH, Score=288, Expect=3e-89]} {RNA1509_59154, RNA1509_59509} {RNA1310_10984.1, RNA1509_59154, RNA1509_59509} {RNA1509_59154, RNA1509_59509, RNA815_23741} |
| 11. | MligTC455_44306 | 2319 | 48.32 | Mlig455_002647 | Neo: Int S/G2/M Age: - |
PABPN1 | 0.953 | - | - | - | 0.953 | - | - | Mlig455_002647 {REF} {Length: 1192} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=64.1]} {Human: ENSG00000100836, PABPN1, poly(A) binding protein nuclear 1, [RH, Score=186, Expect=6e-58]; ENSG00000258643, BCL2L2-PABPN1, BCL2L2-PABPN1 readthrough, [RH, Score=182, Expect=9e-56]} {Mouse: ENSMUSG00000022194, Pabpn1, poly(A) binding protein, nuclear 1, [RH, Score=185, Expect=1e-57]; ENSMUSG00000092232, Gm20521, predicted gene 20521, [RH, Score=181, Expect=1e-55]} {Dmel: FBgn0005648, Pabp2, [RH, Score=219, Expect=5e-72]} {Celegans: WBGene00003904, pabp-2, PolyA Binding Protein (Nuclear), [RH, Score=157, Expect=3e-48]} {Smed: dd_Smed_v6_2924_0_1, dd_Smed_v6_2924_0_1, [RH, Score=150, Expect=2e-45]} {RNA1509_10120} {RNA1310_27727} {RNA815_12820} |
| 12. | MligTC455_32868 | 1086 | 22.62 | Mlig455_025290 | Neo: Neoblast, stringent Age: logFC(26M/2M)=0.427 |
0.952 | - | - | - | 0.952 | - | - | Mlig455_025290 {REF} {Length: 374} {NoTransDecoderORF} {RNA1509_10682} {RNA1310_58158.1} {RNA815_15804} | |
| 13. | MligTC455_41744 | 975 | 20.32 | Mlig455_043745, Mlig455_047480 | Neo: - Age: - |
CERS5 | 0.952 | - | - | - | - | - | 0.952 | Mlig455_043745 {REF} {Length: 2514} {TRANSSPLICED} {Pfam: TLC domain [PF03798.18, score=143.0]; Homeodomain [PF00046.31, score=27.4]} {Human: ENSG00000139624, CERS5, ceramide synthase 5, [RH, Score=249, Expect=2e-79]; ENSG00000143418, CERS2, ceramide synthase 2, [RH, Score=239, Expect=1e-75]; ENSG00000172292, CERS6, ceramide synthase 6, [RH, Score=238, Expect=7e-75]} {Mouse: ENSMUSG00000023021, Cers5, ceramide synthase 5, [RH, Score=269, Expect=6e-87]} {Dmel: FBgn0040918, schlank, [RH, Score=226, Expect=1e-70]} {Celegans: WBGene00002043, hyl-1, Ceramide synthase hyl-1, [RH, Score=159, Expect=4e-46]} {Smed: dd_Smed_v6_4223_0_1, dd_Smed_v6_4223_0_1, [RH, Score=236, Expect=5e-75]} {RNA1509_46469, RNA1509_47741} {RNA1310_13424.2, RNA1509_47741} {RNA1509_47741, RNA815_10078.1} Mlig455_047480 {REF} {Length: 2921} {Pfam: TLC domain [PF03798.18, score=143.0]; Homeodomain [PF00046.31, score=27.4]} {Human: ENSG00000139624, CERS5, ceramide synthase 5, [RH, Score=249, Expect=3e-79]; ENSG00000143418, CERS2, ceramide synthase 2, [RH, Score=239, Expect=1e-75]; ENSG00000172292, CERS6, ceramide synthase 6, [RH, Score=237, Expect=8e-75]} {Mouse: ENSMUSG00000023021, Cers5, ceramide synthase 5, [RH, Score=270, Expect=2e-87]} {Dmel: FBgn0040918, schlank, [RH, Score=227, Expect=4e-71]} {Celegans: WBGene00002043, hyl-1, Ceramide synthase hyl-1, [RH, Score=159, Expect=4e-46]} {Smed: dd_Smed_v6_4223_0_1, dd_Smed_v6_4223_0_1, [RH, Score=234, Expect=1e-74]} {RNA1509_46469} {RNA1310_13424.2} {RNA815_10078.1} |
| 14. | MligTC455_28108 | 147 | 3.07 | Mlig455_049966, Mlig455_051247 | Neo: - Age: - |
0.951 | - | - | - | - | - | 0.951 | Mlig455_049966 {REF} {Length: 1643} {NoTransDecoderORF} {RNA1509_57004} {RNA1310_14078} {RNA815_15623} Mlig455_051247 {REF} {Length: 862} {NoTransDecoderORF} {RNA1509_57004} {RNA1310_15891} {RNA815_15623} |
Berezikov Lab - 2020-2021 © ERIBA