TomoSeq data search

Data search

Results for MligTC455_33018

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_33018

540

11.25

Mlig455_065016

Neo: Int S/G2/M

Age: -

SLX4

Mlig455_065016 {REF} {Length: 3818} {TRANSSPLICED} {Human: ENSG00000188827, SLX4, SLX4 structure-specific endonuclease subunit, [RH, Score=53.5, Expect=1e-06]} {Mouse: ENSMUSG00000039738, Slx4, SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae), [Score=50.1, Expect=1e-05]} {RNA1509_23641, RNA1509_23757} {RNA1310_6766, RNA1509_23641, RNA1509_23757} {RNA1509_23641, RNA1509_23757, RNA815_4724}

Cumulative graph for MligTC455_33018

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.775	3.841	0.44355	1.00000
RegionR2	0.261	3.841	0.59571	0.94753
RegionR3	-0.008	3.841	0.98822	1.00000
RegionR4	0.501	3.841	0.15501	0.40824
RegionR5	0.752	3.841	0.01921	0.09415
RegionR6	0.049	3.841	0.90306	1.00000
RegionR7	-0.005	3.841	0.99388	1.00000
RegionR8	-0.775	3.841	0.34104	0.97462

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.755	3.841	0.65039	1.00000
RegenerationR2	0.323	3.841	0.37690	0.79989
RegenerationR3	0.574	3.841	0.14707	0.57461
RegenerationR4	-0.151	3.841	0.66093	0.93844
RegenerationR5	-0.064	3.841	0.83991	1.00000
RegenerationR6	0.664	3.841	0.09702	0.38742
RegenerationBL	0.043	3.841	0.94078	1.00000
RegenerationTP	0.343	3.841	0.60821	0.96572

Genes with expression patterns similar to MligTC455_33018

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_33018	540	11.25	Mlig455_065016	Neo: Int S/G2/M Age: -	SLX4	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_065016 {REF} {Length: 3818} {TRANSSPLICED} {Human: ENSG00000188827, SLX4, SLX4 structure-specific endonuclease subunit, [RH, Score=53.5, Expect=1e-06]} {Mouse: ENSMUSG00000039738, Slx4, SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae), [Score=50.1, Expect=1e-05]} {RNA1509_23641, RNA1509_23757} {RNA1310_6766, RNA1509_23641, RNA1509_23757} {RNA1509_23641, RNA1509_23757, RNA815_4724}
2.	MligTC455_20748	378	7.87	Mlig455_061316	Neo: Int S/G2/M Age: Up-Up-Down		1.689	0.955	0.734	-	-	-	-	Mlig455_061316 {REF} {Length: 3111} {TRANSSPLICED} {Pfam: WWE domain [PF02825.22, score=19.7]} {RNA1509_8660} {RNA1310_14747} {RNA815_10812.2}
3.	MligTC455_27176	239	4.99	Mlig455_063766	Neo: Irradiation Age: -	C5orf22	1.673	0.960	-	-	0.713	-	-	Mlig455_063766 {REF} {Length: 2615} {TRANSSPLICED} {Pfam: UPF0489 domain [PF12640.9, score=54.3]} {Human: ENSG00000082213, C5orf22, chromosome 5 open reading frame 22, [Score=50.1, Expect=7e-06]} {Mouse: ENSMUSG00000022195, 6030458C11Rik, RIKEN cDNA 6030458C11 gene, [Score=51.2, Expect=2e-06]} {RNA1509_35711} {RNA1310_7857} {RNA815_3337.1}
4.	MligTC455_35412	78	1.63	Mlig455_064234	Neo: - Age: logFC(26M/2M)=-0.522 Region-enriched R4: 5.694/0.00671	PPP3CA	0.968	-	-	-	-	0.968	-	Mlig455_064234 {REF} {Length: 1945} {Pfam: Calcineurin-like phosphoesterase [PF00149.30, score=130.1]} {Human: ENSG00000138814, PPP3CA, protein phosphatase 3 catalytic subunit alpha, [Score=684, Expect=0.0]; ENSG00000107758, PPP3CB, protein phosphatase 3 catalytic subunit beta, [Score=672, Expect=0.0]; ENSG00000120910, PPP3CC, protein phosphatase 3 catalytic subunit gamma, [Score=663, Expect=0.0]} {Mouse: ENSMUSG00000028161, Ppp3ca, protein phosphatase 3, catalytic subunit, alpha isoform, [Score=686, Expect=0.0]; ENSMUSG00000021816, Ppp3cb, protein phosphatase 3, catalytic subunit, beta isoform, [Score=673, Expect=0.0]; ENSMUSG00000022092, Ppp3cc, protein phosphatase 3, catalytic subunit, gamma isoform, [Score=653, Expect=0.0]} {Dmel: FBgn0267912, CanA-14F, Calcineurin A at 14F, [Score=681, Expect=0.0]} {Celegans: WBGene00006527, tax-6, Serine/threonine-protein phosphatase 2B catalytic subunit, [RH, Score=650, Expect=0.0]} {Smed: dd_Smed_v6_9037_0_1, dd_Smed_v6_9037_0_1, [RH, Score=596, Expect=0.0]} {RNA1509_53749} {RNA1310_17931} {RNA815_6996}
5.	MligTC455_26123	80	1.67	Mlig455_037016	Neo: - Age: -		0.965	-	-	-	-	0.965	-	Mlig455_037016 {REF} {Length: 2931} {RNA1509_41127} {RNA1310_16094.1} {RNA815_15247.1}
6.	MligTC455_51318	370	7.71	Mlig455_040327	Neo: Int S/G2/M Age: logFC(26M/2M)=0.854 Region-enriched R5: 1.980/0.00436	RAD51C	0.96	-	-	-	-	0.960	-	Mlig455_040327 {REF} {Length: 1394} {Pfam: Rad51 [PF08423.13, score=138.5]; AAA domain [PF13481.8, score=35.5]; KaiC [PF06745.15, score=18.8]} {Human: ENSG00000108384, RAD51C, RAD51 paralog C, [RH, Score=183, Expect=1e-53]} {Mouse: ENSMUSG00000007646, Rad51c, RAD51 paralog C, [RH, Score=181, Expect=4e-53]} {Dmel: FBgn0003482, spn-D, spindle D, [RH, Score=110, Expect=1e-27]} {Celegans: WBGene00004297, rad-51, RAD51 short isoform; RecA/Rad51/Dmc1-like protein, [Score=70.1, Expect=4e-13]} {Smed: dd_Smed_v6_16724_0_2, dd_Smed_v6_16724_0_2, [RH, Score=184, Expect=2e-55]} {RNA1509_27617} {RNA1310_25633.1} {RNA815_20829}
7.	MligTC455_11294	430	8.95	Mlig455_068327	Neo: - Age: -		0.958	-	-	-	-	0.958	-	Mlig455_068327 {REF} {Length: 1267} {Pfam: Gp5 C-terminal repeat (3 copies) [PF06715.14, score=21.5]} {RNA1509_10965} {RNA1310_87215.1} {RNA815_44952}
8.	MligTC455_53732	1576	32.83	Mlig455_042222	Neo: - Age: -	PPP2CA	0.957	-	-	-	-	0.957	-	Mlig455_042222 {REF} {Length: 1960} {Pfam: Calcineurin-like phosphoesterase [PF00149.30, score=119.5]} {Human: ENSG00000113575, PPP2CA, protein phosphatase 2 catalytic subunit alpha, [RH, Score=590, Expect=0.0]; ENSG00000104695, PPP2CB, protein phosphatase 2 catalytic subunit beta, [RH, Score=588, Expect=0.0]} {Mouse: ENSMUSG00000020349, Ppp2ca, protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform, [RH, Score=589, Expect=0.0]; ENSMUSG00000009630, Ppp2cb, protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform, [RH, Score=588, Expect=0.0]} {Dmel: FBgn0004177, mts, microtubule star, [RH, Score=583, Expect=0.0]} {Celegans: WBGene00002363, let-92, Serine/threonine-protein phosphatase 2A catalytic subunit, [RH, Score=565, Expect=0.0]} {Smed: dd_Smed_v6_1280_0_1, dd_Smed_v6_1280_0_1, [RH, Score=580, Expect=0.0]} {RNA1509_12359, RNA1509_24968, RNA1509_4825} {RNA1310_28799, RNA1509_24968, RNA1509_4825} {RNA1509_24968, RNA1509_4825, RNA815_5316.1}
9.	MligTC455_17864	106	2.22	Mlig455_053276, Mlig455_068205	Neo: - Age: -	TRPM1	0.95	-	-	-	-	0.950	-	Mlig455_053276 {REF} {Length: 4440} {Pfam: Ankyrin repeats (many copies) [PF13637.8, score=58.3]; Ankyrin repeats (3 copies) [PF12796.9, score=56.1]; Ion transport protein [PF00520.33, score=48.5]; Ankyrin repeat [PF13606.8, score=45.7]; Ankyrin repeats (many copies) [PF13857.8, score=41.3]; Ankyrin repeat [PF00023.32, score=37.3]} {Human: ENSG00000274965, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=115, Expect=4e-25]; ENSG00000134160, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=115, Expect=3e-25]} {Mouse: ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=115, Expect=2e-25]} {Dmel: FBgn0260005, wtrw, water witch, [Score=54.3, Expect=8e-07]} {Smed: dd_Smed_v6_8382_0_1, dd_Smed_v6_8382_0_1, [Score=177, Expect=4e-45]} {RNA1310_17511} {RNA815_39080} Mlig455_068205 {REF} {Length: 4167} {Pfam: Ankyrin repeats (many copies) [PF13637.8, score=58.8]; Ankyrin repeats (3 copies) [PF12796.9, score=55.3]; Ion transport protein [PF00520.33, score=48.0]; Ankyrin repeat [PF13606.8, score=44.5]; Ankyrin repeats (many copies) [PF13857.8, score=40.2]; Ankyrin repeat [PF00023.32, score=37.4]} {Human: ENSG00000274965, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=110, Expect=1e-23]; ENSG00000134160, TRPM1, transient receptor potential cation channel subfamily M member 1, [Score=110, Expect=1e-23]} {Mouse: ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=109, Expect=2e-23]} {Dmel: FBgn0027508, Tnks, tankyrase, [Score=53.1, Expect=1e-06]} {Smed: dd_Smed_v6_8382_0_1, dd_Smed_v6_8382_0_1, [Score=177, Expect=4e-45]} {RNA1310_17511} {RNA815_39080}

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