M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_40465

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_40465 165 3.45 Mlig455_012477

Neo: Irradiation

Age: -

 INTS6 Mlig455_012477 {REF} {Length: 4658} {TRANSSPLICED} {Pfam: von Willebrand factor type A domain [PF13519.8, score=61.6]} {Human: ENSG00000102786, INTS6, integrator complex subunit 6, [RH, Score=599, Expect=0.0]; ENSG00000165359, INTS6L, integrator complex subunit 6 like, [RH, Score=586, Expect=0.0]} {Mouse: ENSMUSG00000035161, Ints6, integrator complex subunit 6, [RH, Score=598, Expect=0.0]} {Dmel: FBgn0261383, IntS6, Integrator 6, [RH, Score=457, Expect=7e-143]} {Celegans: WBGene00000994, dic-1, DICE1 (Deleted In Cancer) homolog, [RH, Score=215, Expect=4e-58]} {Smed: dd_Smed_v6_11019_0_1, dd_Smed_v6_11019_0_1, [RH, Score=476, Expect=3e-155]} {RNA1509_16366} {RNA1310_4525} {RNA815_19797}

Cumulative graph for MligTC455_40465

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -5.124 2.61 0.28968 0.94147
RegionR2 0.388 2.61 0.71031 1.00000
RegionR3 0.942 2.61 0.30647 0.84627
RegionR4 1.807 2.61 0.06094 0.22052
RegionR5 1.466 2.61 0.04977 0.18688
RegionR6 0.717 2.61 0.46912 1.00000
RegionR7 0.629 2.61 0.58108 1.00000
RegionR8 -0.825 2.61 0.98129 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.181 2.61 0.99978 1.00000
RegenerationR2 -0.018 2.61 0.96841 1.00000
RegenerationR3 0.034 2.61 0.96826 1.00000
RegenerationR4 -0.767 2.61 0.30267 0.74429
RegenerationR5 0.5 2.61 0.37855 0.78623
RegenerationR6 1.458 2.61 0.03186 0.22344
RegenerationBL 1.295 2.61 0.20692 0.54929
RegenerationTP -0.53 2.61 0.68773 1.00000


Genes with expression patterns similar to MligTC455_40465

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_40465 165 3.45 Mlig455_012477

Neo: Irradiation

Age: -

 INTS6 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_012477 {REF} {Length: 4658} {TRANSSPLICED} {Pfam: von Willebrand factor type A domain [PF13519.8, score=61.6]} {Human: ENSG00000102786, INTS6, integrator complex subunit 6, [RH, Score=599, Expect=0.0]; ENSG00000165359, INTS6L, integrator complex subunit 6 like, [RH, Score=586, Expect=0.0]} {Mouse: ENSMUSG00000035161, Ints6, integrator complex subunit 6, [RH, Score=598, Expect=0.0]} {Dmel: FBgn0261383, IntS6, Integrator 6, [RH, Score=457, Expect=7e-143]} {Celegans: WBGene00000994, dic-1, DICE1 (Deleted In Cancer) homolog, [RH, Score=215, Expect=4e-58]} {Smed: dd_Smed_v6_11019_0_1, dd_Smed_v6_11019_0_1, [RH, Score=476, Expect=3e-155]} {RNA1509_16366} {RNA1310_4525} {RNA815_19797}
2. MligTC455_43628 537 11.19 Mlig455_001214

Neo: Neoblast, stringent

Age: -

Region-enriched R5: 1.841/0.00696

Regeneration-upregulated BL: 2.235

Regeneration-enriched BL: 2.235

 G2E3 2.57 - - 0.723 0.968 - 0.879 Mlig455_001214 {REF} {Length: 2124} {Pfam: PHD-like zinc-binding domain [PF13771.8, score=44.7]} {Human: ENSG00000092140, G2E3, G2/M-phase specific E3 ubiquitin protein ligase, [RH, Score=154, Expect=3e-40]} {Mouse: ENSMUSG00000035293, G2e3, G2/M-phase specific E3 ubiquitin ligase, [RH, Score=142, Expect=2e-36]; ENSMUSG00000021902, Phf7, PHD finger protein 7, [RH, Score=137, Expect=9e-37]} {Dmel: FBgn0005683, pie, pineapple eye, [RH, Score=110, Expect=6e-26]} {Smed: dd_Smed_v6_6301_0_1, dd_Smed_v6_6301_0_1, [RH, Score=116, Expect=3e-28]} {RNA1509_27373} {RNA1310_12923.1, RNA1509_27373} {RNA1509_27373, RNA815_4856}
3. MligTC455_32699 111 2.31 Mlig455_038166

Neo: Irradiation

Age: -

 FGFR3 1.848 - - 0.890 - 0.958 - Mlig455_038166 {REF} {Length: 5381} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=237.1]; Protein kinase domain [PF00069.27, score=125.1]; Immunoglobulin domain [PF13927.8, score=37.2]; Immunoglobulin domain [PF00047.27, score=33.3]; Immunoglobulin domain [PF13895.8, score=29.5]; Immunoglobulin V-set domain [PF07686.19, score=25.2]; Fungal protein kinase [PF17667.3, score=18.8]} {Human: ENSG00000068078, FGFR3, fibroblast growth factor receptor 3, [Score=203, Expect=1e-54]; ENSG00000077782, FGFR1, fibroblast growth factor receptor 1, [Score=199, Expect=4e-53]; ENSG00000160867, FGFR4, fibroblast growth factor receptor 4, [Score=195, Expect=2e-51]} {Mouse: ENSMUSG00000031565, Fgfr1, fibroblast growth factor receptor 1, [Score=199, Expect=3e-53]; ENSMUSG00000054252, Fgfr3, fibroblast growth factor receptor 3, [Score=198, Expect=1e-52]; ENSMUSG00000005320, Fgfr4, fibroblast growth factor receptor 4, [Score=195, Expect=2e-51]; ENSMUSG00000030849, Fgfr2, fibroblast growth factor receptor 2, [Score=193, Expect=9e-51]} {Dmel: FBgn0285896, btl, breathless, [Score=208, Expect=2e-55]} {Celegans: WBGene00001184, egl-15, Myoblast growth factor receptor egl-15, [Score=206, Expect=9e-55]} {Smed: dd_Smed_v6_12998_0_3, dd_Smed_v6_12998_0_3, [Score=196, Expect=2e-52]} {RNA1509_25243} {RNA1310_14119} {RNA815_2456.1}
4. MligTC455_48926 253 5.27 Mlig455_021971

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.527

 GSTZ1 1.789 - - - - 0.811 0.978 Mlig455_021971 {REF} {Length: 2285} {TRANSSPLICED} {Pfam: Glutathione S-transferase, N-terminal domain [PF13417.8, score=68.3]; Glutathione S-transferase, N-terminal domain [PF02798.22, score=64.0]; Glutathione S-transferase, N-terminal domain [PF13409.8, score=54.8]} {Human: ENSG00000100577, GSTZ1, glutathione S-transferase zeta 1, [RH, Score=231, Expect=7e-77]} {Mouse: ENSMUSG00000021033, Gstz1, glutathione transferase zeta 1 (maleylacetoacetate isomerase), [RH, Score=238, Expect=7e-80]} {Dmel: FBgn0037697, GstZ2, Glutathione S transferase Z2, [RH, Score=230, Expect=1e-76]} {Celegans: WBGene00001790, gst-42, Probable maleylacetoacetate isomerase, [RH, Score=189, Expect=1e-60]} {Smed: dd_Smed_v6_1703_0_1, dd_Smed_v6_1703_0_1, [RH, Score=226, Expect=3e-75]} {RNA1509_16440} {RNA1310_16659.1} {RNA815_19786}
5. MligTC455_11886 197 4.1 Mlig455_060688

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.387

 1.759 - - 0.953 - - 0.806 Mlig455_060688 {REF} {Length: 2150} {TRANSSPLICED} {Pfam: SAM domain (Sterile alpha motif) [PF07647.19, score=44.3]; SAM domain (Sterile alpha motif) [PF00536.32, score=36.5]} {Dmel: FBgn0050476, ave, aveugle, [RH, Score=45.4, Expect=1e-06]} {RNA1509_24373, RNA1509_52265} {RNA1310_35457.1, RNA1509_24373, RNA1509_52265} {RNA1509_24373, RNA1509_52265, RNA815_21293}
6. MligTC455_42752 212 4.42 Mlig455_016044

Neo: -

Age: -

 DUS4L 1.651 - - 0.950 - 0.701 - Mlig455_016044 {REF} {Length: 3549} {Pfam: Dihydrouridine synthase (Dus) [PF01207.19, score=207.7]} {Human: ENSG00000105865, DUS4L, dihydrouridine synthase 4 like, [RH, Score=277, Expect=9e-92]; ENSG00000284103, DUS4L, dihydrouridine synthase 4 like, [RH, Score=277, Expect=9e-92]} {Mouse: ENSMUSG00000020648, Dus4l, dihydrouridine synthase 4-like (S. cerevisiae), [RH, Score=275, Expect=1e-90]} {Dmel: FBgn0032750, CG10495, [RH, Score=238, Expect=9e-76]} {Celegans: WBGene00016674, C45G9.2, Uncharacterized tRNA-dihydrouridine synthase-like protein C45G9.2, [RH, Score=213, Expect=2e-67]} {Smed: dd_Smed_v6_9471_0_1, dd_Smed_v6_9471_0_1, [RH, Score=281, Expect=9e-94]} {RNA1509_37119} {RNA1310_18470.1, RNA1509_37119} {RNA1509_37119, RNA815_611.1}
7. MligTC455_44688 50 1.04 Mlig455_001904

Neo: -

Age: -

 NKRF 0.975 - - 0.975 - - - Mlig455_001904 {REF} {Length: 2328} {TRANSSPLICED} {Pfam: XRN-Two Binding Domain, XTBD [PF11952.10, score=48.3]; G-patch domain [PF01585.25, score=30.8]; G-patch domain [PF12656.9, score=30.8]; R3H domain [PF01424.24, score=23.9]} {Human: ENSG00000186416, NKRF, NFKB repressing factor, [RH, Score=79.7, Expect=4e-15]} {Mouse: ENSMUSG00000044149, Nkrf, NF-kappaB repressing factor, [RH, Score=80.9, Expect=9e-16]} {Celegans: WBGene00013224, Y55D9A.2, [Score=50.1, Expect=3e-06]} {Smed: dd_Smed_v6_10443_0_1, dd_Smed_v6_10443_0_1, [RH, Score=96.3, Expect=4e-21]} {RNA1509_22309} {RNA1310_17483.1} {RNA815_7028}
8. MligTC455_48788 183 3.82 Mlig455_035100, Mlig455_053308

Neo: Irradiation

Age: Down-Up-Down

 GNAO1 0.972 - - 0.972 - - -

Mlig455_035100 {REF} {Length: 2706} {Pfam: G-protein alpha subunit [PF00503.22, score=366.7]; ADP-ribosylation factor family [PF00025.23, score=53.2]} {Human: ENSG00000087258, GNAO1, G protein subunit alpha o1, [Score=511, Expect=0.0]} {Mouse: ENSMUSG00000031748, Gnao1, guanine nucleotide binding protein, alpha O, [Score=505, Expect=0.0]} {Dmel: FBgn0001122, Galphao, G protein alpha o subunit, [Score=550, Expect=0.0]} {Celegans: WBGene00001648, goa-1, Guanine nucleotide-binding protein G(o) subunit alpha, [Score=540, Expect=0.0]} {Smed: dd_Smed_v6_1656_0_2, dd_Smed_v6_1656_0_2, [Score=540, Expect=0.0]} {RNA1509_46579} {RNA1310_17579} {RNA815_37690}

Mlig455_053308 {REF} {Length: 2701} {TRANSSPLICED} {Pfam: G-protein alpha subunit [PF00503.22, score=390.5]; ADP-ribosylation factor family [PF00025.23, score=62.3]; Gtr1/RagA G protein conserved region [PF04670.14, score=25.9]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=21.7]} {Human: ENSG00000087258, GNAO1, G protein subunit alpha o1, [Score=556, Expect=0.0]} {Mouse: ENSMUSG00000031748, Gnao1, guanine nucleotide binding protein, alpha O, [Score=550, Expect=0.0]} {Dmel: FBgn0001122, Galphao, G protein alpha o subunit, [Score=596, Expect=0.0]} {Celegans: WBGene00001648, goa-1, Guanine nucleotide-binding protein G(o) subunit alpha, [Score=584, Expect=0.0]} {Smed: dd_Smed_v6_1656_0_2, dd_Smed_v6_1656_0_2, [Score=581, Expect=0.0]} {RNA1509_46579} {RNA1310_19561} {RNA815_37690}
9. MligTC455_19095 82 1.72 Mlig455_034497

Neo: -

Age: -

 0.97 - - 0.970 - - - Mlig455_034497 {REF} {Length: 828} {NoTransDecoderORF}
10. MligTC455_39857 27 0.55 Mlig455_037127

Neo: -

Age: Down-Down-Down

 NECAB1 0.969 - - 0.969 - - - Mlig455_037127 {REF} {Length: 1710} {Pfam: EF-hand domain [PF13405.8, score=34.9]; EF hand [PF00036.34, score=33.1]; EF-hand domain pair [PF13499.8, score=27.6]; EF-hand domain pair [PF13833.8, score=27.3]; Antibiotic biosynthesis monooxygenase [PF03992.18, score=25.2]; EF hand [PF13202.8, score=23.2]} {Human: ENSG00000123119, NECAB1, N-terminal EF-hand calcium binding protein 1, [Score=186, Expect=7e-55]} {Mouse: ENSMUSG00000040536, Necab1, N-terminal EF-hand calcium binding protein 1, [Score=180, Expect=7e-53]} {RNA1310_5770} {RNA815_27367}
11. MligTC455_43392 90 1.88 Mlig455_055609

Neo: -

Age: -

Region-enriched R4: 3.592/0.03736

 0.969 - - 0.969 - - - Mlig455_055609 {REF} {Length: 3000} {TRANSSPLICED} {Mouse: ENSMUSG00000002343, Armc6, armadillo repeat containing 6, [RH, Score=120, Expect=3e-29]} {Dmel: FBgn0034315, CG5721, [RH, Score=113, Expect=7e-27]} {Smed: dd_Smed_v6_1357_0_1, dd_Smed_v6_1357_0_1, [RH, Score=147, Expect=8e-39]} {RNA1509_31191} {RNA1310_17098.1} {RNA815_7466}
12. MligTC455_47475 690 14.37 Mlig455_007958, Mlig455_008101, Mlig455_015589

Neo: Int S/G2/M

Age: -

 POLR2G 0.959 - - - - - 0.959

Mlig455_007958 {REF} {Length: 2004} {Pfam: S1 RNA binding domain [PF00575.25, score=55.7]; SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 [PF03876.19, score=44.0]} {Human: ENSG00000168002, POLR2G, RNA polymerase II subunit G, [RH, Score=267, Expect=2e-92]} {Mouse: ENSMUSG00000071662, Polr2g, polymerase (RNA) II (DNA directed) polypeptide G, [RH, Score=267, Expect=1e-92]} {Dmel: FBgn0051155, Rpb7, [RH, Score=249, Expect=1e-85]} {Celegans: WBGene00021845, rpb-7, RNA Polymerase II (B) subunit, [RH, Score=248, Expect=8e-85]} {Smed: dd_Smed_v6_6411_0_1, dd_Smed_v6_6411_0_1, [RH, Score=210, Expect=3e-70]} {RNA1509_27027} {RNA1310_22082} {RNA815_7998}

Mlig455_008101 {REF} {Length: 2059} {Pfam: S1 RNA binding domain [PF00575.25, score=55.7]; SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 [PF03876.19, score=44.0]} {Human: ENSG00000168002, POLR2G, RNA polymerase II subunit G, [RH, Score=267, Expect=2e-92]} {Mouse: ENSMUSG00000071662, Polr2g, polymerase (RNA) II (DNA directed) polypeptide G, [RH, Score=267, Expect=1e-92]} {Dmel: FBgn0051155, Rpb7, [RH, Score=249, Expect=1e-85]} {Celegans: WBGene00021845, rpb-7, RNA Polymerase II (B) subunit, [RH, Score=248, Expect=8e-85]} {Smed: dd_Smed_v6_6411_0_1, dd_Smed_v6_6411_0_1, [RH, Score=210, Expect=3e-70]} {RNA1509_27027} {RNA1310_22082, RNA1509_27027} {RNA1509_27027, RNA815_7998}

Mlig455_015589 {REF} {Length: 1966} {Pfam: S1 RNA binding domain [PF00575.25, score=55.7]; SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 [PF03876.19, score=44.0]} {Human: ENSG00000168002, POLR2G, RNA polymerase II subunit G, [RH, Score=267, Expect=2e-92]} {Mouse: ENSMUSG00000071662, Polr2g, polymerase (RNA) II (DNA directed) polypeptide G, [RH, Score=267, Expect=1e-92]} {Dmel: FBgn0051155, Rpb7, [RH, Score=249, Expect=1e-85]} {Celegans: WBGene00021845, rpb-7, RNA Polymerase II (B) subunit, [RH, Score=248, Expect=8e-85]} {Smed: dd_Smed_v6_6411_0_1, dd_Smed_v6_6411_0_1, [RH, Score=210, Expect=3e-70]} {RNA1509_27027} {RNA1310_22082} {RNA815_7998}
13. MligTC455_25941 28 0.59 Mlig455_022342

Neo: -

Age: -

 0.956 - - 0.956 - - - Mlig455_022342 {REF} {Length: 747} {NoTransDecoderORF} {RNA1509_41508} {RNA1310_23482} {RNA815_49293}
14. MligTC455_31460 489 10.18 Mlig455_004816, Mlig455_004883, Mlig455_004897

Neo: -

Age: -

 ATF3, JUND 0.952 - - 0.952 - - -

Mlig455_004816 {REF} {Length: 4915} {TRANSSPLICED} {tRNA: Met(CAT),pseudo, score=20.4} {Pfam: bZIP transcription factor [PF00170.23, score=48.5]; Basic region leucine zipper [PF07716.17, score=32.7]; bZIP Maf transcription factor [PF03131.19, score=19.6]} {Human: ENSG00000130522, JUND, JunD proto-oncogene, AP-1 transcription factor subunit, [Score=58.5, Expect=6e-09]; ENSG00000177606, JUN, Jun proto-oncogene, AP-1 transcription factor subunit, [Score=57.4, Expect=2e-08]} {Mouse: ENSMUSG00000110974, Jund, jun D proto-oncogene, [Score=58.5, Expect=4e-09]; ENSMUSG00000071076, Jund, jun D proto-oncogene, [Score=58.5, Expect=4e-09]; ENSMUSG00000052684, Jun, jun proto-oncogene, [Score=57.0, Expect=1e-08]} {Dmel: FBgn0001297, kay, kayak, [Score=64.7, Expect=6e-11]} {RNA1509_17888} {RNA1310_24181, RNA1509_17888} {RNA1509_17888, RNA815_15830}

Mlig455_004883 {REF} {Length: 4920} {TRANSSPLICED} {tRNA: Met(CAT),pseudo, score=20.4} {Pfam: bZIP transcription factor [PF00170.23, score=28.4]; Herpesvirus large structural phosphoprotein UL32 [PF06070.13, score=16.6]} {Dmel: FBgn0001297, kay, kayak, [Score=51.6, Expect=4e-07]} {RNA1509_22204} {RNA1310_24181, RNA1509_22204} {RNA1509_22204, RNA815_15830}

Mlig455_004897 {REF} {Length: 2063} {tRNA: Met(CAT),pseudo, score=20.4} {Pfam: bZIP transcription factor [PF00170.23, score=44.4]; Basic region leucine zipper [PF07716.17, score=29.7]} {Human: ENSG00000162772, ATF3, activating transcription factor 3, [RH, Score=53.1, Expect=4e-08]} {Mouse: ENSMUSG00000026628, Atf3, activating transcription factor 3, [RH, Score=50.1, Expect=8e-07]} {Dmel: FBgn0001297, kay, kayak, [RH, Score=63.5, Expect=1e-10]} {RNA1509_22204} {RNA1310_24181} {RNA815_15830}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA