M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_41126

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_41126 619 12.90 Mlig455_050185

Neo: -

Age: -

Region-enriched R6: 3.273/0.00035

 Mlig455_050185 {REF} {Length: 671} {RNA1509_36640} {RNA1310_51392} {RNA815_51264}

Cumulative graph for MligTC455_41126

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.891 4.069 0.25607 0.90452
RegionR2 2.104 4.069 0.01072 0.10538
RegionR3 1.845 4.069 0.00639 0.11226
RegionR4 -1.099 4.069 0.22958 0.52215
RegionR5 -1.55 4.069 0.06002 0.21330
RegionR6 3.273 4.069 0.00000 0.00035
RegionR7 -1.032 4.069 0.27378 0.90493
RegionR8 -1.65 4.069 0.16634 0.73794

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -5.946 4.069 0.25467 0.96756
RegenerationR2 -0.877 4.069 0.26783 0.71371
RegenerationR3 -0.3 4.069 0.70824 0.95084
RegenerationR4 0.418 4.069 0.63808 0.92651
RegenerationR5 0.216 4.069 0.80242 0.98907
RegenerationR6 -1.576 4.069 0.05598 0.29692
RegenerationBL -0.849 4.069 0.38734 0.75573
RegenerationTP -1.114 4.069 0.37762 0.81318


Genes with expression patterns similar to MligTC455_41126

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_41126 619 12.9 Mlig455_050185

Neo: -

Age: -

Region-enriched R6: 3.273/0.00035

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_050185 {REF} {Length: 671} {RNA1509_36640} {RNA1310_51392} {RNA815_51264}
2. MligTC455_41125 1467 30.56 Mlig455_023570, Mlig455_066989

Neo: -

Age: -

Region-enriched R6: 2.886/0.00252

 MUC22 5.784 1.000 0.998 0.819 0.999 0.991 0.977

Mlig455_023570 {REF} {Length: 1213} {Human: ENSG00000261272, MUC22, mucin 22, [Score=62.8, Expect=6e-11]} {RNA1509_36640} {RNA1310_51392} {RNA815_51264}

Mlig455_066989 {REF} {Length: 1093} {Human: ENSG00000261272, MUC22, mucin 22, [Score=55.8, Expect=5e-09]} {RNA1509_36640} {RNA1310_51392} {RNA815_51264}
3. MligTC455_02515 538 11.21 Mlig455_036260, Mlig455_054531, Mlig455_055383

Neo: -

Age: -

 3.429 - 0.815 0.712 0.943 0.959 -

Mlig455_036260 {REF} {Length: 1371} {RNA1509_27757} {RNA1310_64500.1} {RNA815_18682}

Mlig455_054531 {REF} {Length: 1625} {RNA1509_27757} {RNA1310_62804} {RNA815_18682}

Mlig455_055383 {REF} {Length: 1697} {RNA1509_27757} {RNA1310_62804, RNA1509_27757} {RNA1509_27757, RNA815_18682}
4. MligTC455_42216 190 3.96 Mlig455_035655

Neo: -

Age: -

 OSR2 2.462 - - - 0.779 0.957 0.726 Mlig455_035655 {REF} {Length: 1942} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=50.3]; C2H2-type zinc finger [PF13894.8, score=37.2]; Zinc-finger double domain [PF13465.8, score=34.8]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=26.1]; C2H2-type zinc finger [PF13912.8, score=22.2]} {Human: ENSG00000164920, OSR2, odd-skipped related transciption factor 2, [RH, Score=170, Expect=1e-49]} {Mouse: ENSMUSG00000022330, Osr2, odd-skipped related 2, [RH, Score=170, Expect=8e-50]} {Dmel: FBgn0002985, odd, odd skipped, [RH, Score=166, Expect=3e-47]} {Celegans: WBGene00003846, odd-2, Protein odd-skipped-related 2, [RH, Score=171, Expect=1e-50]} {Smed: dd_Smed_v6_10039_0_1, dd_Smed_v6_10039_0_1, [RH, Score=189, Expect=3e-57]} {RNA1509_57522} {RNA1310_26149, RNA1509_57522} {RNA1509_57522, RNA815_39133}
5. MligTC455_13845 25 0.52 Mlig455_030364, Mlig455_030411

Neo: -

Age: -

 GRIK1, GRIK3 1.916 - - - 0.985 0.931 -

Mlig455_030364 {REF} {Length: 5127} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=78.2]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=56.4]; Ligand-gated ion channel [PF00060.28, score=42.3]} {Human: ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=150, Expect=1e-36]; ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=148, Expect=4e-36]; ENSG00000149403, GRIK4, glutamate ionotropic receptor kainate type subunit 4, [Score=147, Expect=9e-36]; ENSG00000164418, GRIK2, glutamate ionotropic receptor kainate type subunit 2, [Score=146, Expect=1e-35]; ENSG00000152578, GRIA4, glutamate ionotropic receptor AMPA type subunit 4, [Score=146, Expect=1e-35]} {Mouse: ENSMUSG00000032017, Grik4, glutamate receptor, ionotropic, kainate 4, [Score=150, Expect=8e-37]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=148, Expect=4e-36]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=147, Expect=5e-36]; ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=147, Expect=5e-36]; ENSMUSG00000025892, Gria4, glutamate receptor, ionotropic, AMPA4 (alpha 4), [Score=146, Expect=1e-35]} {Dmel: FBgn0038837, CG3822, [Score=150, Expect=6e-37]} {Celegans: WBGene00001613, glr-2, Glutamate receptor 2, [Score=129, Expect=2e-30]} {Smed: dd_Smed_v6_14655_0_1, dd_Smed_v6_14655_0_1, [Score=171, Expect=1e-43]} {RNA1509_59839} {RNA1310_10552} {RNA815_2154.1}

Mlig455_030411 {REF} {Length: 1792} {Pfam: Ligated ion channel L-glutamate- and glycine-binding site [PF10613.11, score=78.4]; Ligand-gated ion channel [PF00060.28, score=42.7]; Bacterial extracellular solute-binding proteins, family 3 [PF00497.22, score=35.7]} {Human: ENSG00000163873, GRIK3, glutamate ionotropic receptor kainate type subunit 3, [Score=132, Expect=2e-31]; ENSG00000171189, GRIK1, glutamate ionotropic receptor kainate type subunit 1, [Score=126, Expect=2e-29]} {Mouse: ENSMUSG00000001985, Grik3, glutamate receptor, ionotropic, kainate 3, [Score=132, Expect=2e-31]; ENSMUSG00000022935, Grik1, glutamate receptor, ionotropic, kainate 1, [Score=127, Expect=5e-30]; ENSMUSG00000056073, Grik2, glutamate receptor, ionotropic, kainate 2 (beta 2), [Score=126, Expect=1e-29]} {Dmel: FBgn0038837, CG3822, [Score=122, Expect=1e-28]} {Celegans: WBGene00001613, glr-2, Glutamate receptor 2, [Score=115, Expect=2e-26]} {Smed: dd_Smed_v6_14655_0_1, dd_Smed_v6_14655_0_1, [Score=137, Expect=2e-33]} {RNA1509_59839} {RNA1310_10552} {RNA815_46189}
6. MligTC455_45252 441 9.18 Mlig455_013976, Mlig455_034997, Mlig455_056738

Neo: -

Age: -

 1.847 - - - 0.959 0.888 -

Mlig455_013976 {REF} {Length: 2103} {RNA1509_34108} {RNA1310_24390} {RNA815_37298}

Mlig455_034997 {REF} {Length: 1972} {RNA1509_34108} {RNA1310_20099.1, RNA1509_34108} {RNA1509_34108, RNA815_37298}

Mlig455_056738 {REF} {Length: 1835} {RNA1509_34108} {RNA1310_24390} {RNA815_37298}
7. MligTC455_10396 50 1.05 Mlig455_046206

Neo: -

Age: -

Region-enriched R3: 5.170/0.02090

 1.838 - - - 0.980 0.858 - Mlig455_046206 {REF} {Length: 650} {RNA1310_75011.2} {RNA815_47673}
8. MligTC455_25371 13 0.26 Mlig455_014547, Mlig455_014550

Neo: -

Age: Up-Down-Up

 NCAM2 1.832 - - - 0.991 0.841 -

Mlig455_014547 {REF} {Length: 1183} {Pfam: Integrase zinc binding domain [PF17921.3, score=56.1]} {RNA1509_45000} {RNA1310_89740}

Mlig455_014550 {REF} {Length: 5582} {TRANSSPLICED} {Pfam: Immunoglobulin domain [PF13927.8, score=102.0]; Immunoglobulin I-set domain [PF07679.18, score=80.2]; Immunoglobulin domain [PF13895.8, score=71.6]; Immunoglobulin domain [PF00047.27, score=52.0]; CD80-like C2-set immunoglobulin domain [PF08205.14, score=43.9]; Immunoglobulin V-set domain [PF07686.19, score=29.5]} {Human: ENSG00000154654, NCAM2, neural cell adhesion molecule 2, [Score=122, Expect=3e-28]} {Mouse: ENSMUSG00000022762, Ncam2, neural cell adhesion molecule 2, [Score=115, Expect=3e-26]} {Dmel: FBgn0033159, Dscam1, Down syndrome cell adhesion molecule 1, [Score=60.8, Expect=4e-09]} {Celegans: WBGene00001863, him-4, Hemicentin; High Incidence of Males (Increased X chromosome loss), [Score=70.1, Expect=4e-12]} {Smed: dd_Smed_v6_1161_0_1, dd_Smed_v6_1161_0_1, [Score=53.9, Expect=3e-07]} {RNA1509_40266} {RNA1310_7040} {RNA815_17849}
9. MligTC455_20382 62 1.28 Mlig455_032572

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-5.752

 1.75 - - - 0.777 0.973 - Mlig455_032572 {REF} {Length: 520} {RNA1509_48296} {RNA1310_86641, RNA1509_48296} {RNA1509_48296, RNA815_40392}
10. MligTC455_12560 18 0.37 Mlig455_059693

Neo: -

Age: -

 1.737 - - 0.749 0.988 - - Mlig455_059693 {REF} {Length: 1160} {RNA1310_113662} {RNA815_53854}
11. MligTC455_44779 130 2.72 Mlig455_067160

Neo: -

Age: -

 HPCAL1 1.73 - - - 0.765 0.965 - Mlig455_067160 {REF} {Length: 2391} {TRANSSPLICED} {Pfam: EF-hand domain pair [PF13499.8, score=91.7]; EF hand [PF00036.34, score=73.6]; EF-hand domain [PF13405.8, score=67.9]; EF hand [PF13202.8, score=57.0]; EF-hand domain pair [PF13833.8, score=52.7]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=24.2]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=21.9]} {Human: ENSG00000115756, HPCAL1, hippocalcin like 1, [RH, Score=302, Expect=8e-106]; ENSG00000121905, HPCA, hippocalcin, [RH, Score=299, Expect=3e-104]; ENSG00000104490, NCALD, neurocalcin delta, [RH, Score=298, Expect=4e-104]} {Mouse: ENSMUSG00000071379, Hpcal1, hippocalcin-like 1, [RH, Score=301, Expect=2e-105]; ENSMUSG00000028785, Hpca, hippocalcin, [RH, Score=299, Expect=2e-104]; ENSMUSG00000051359, Ncald, neurocalcin delta, [RH, Score=298, Expect=3e-104]} {Dmel: FBgn0013303, Nca, Neurocalcin, [RH, Score=308, Expect=2e-108]} {Celegans: WBGene00003563, ncs-1, Neuronal calcium sensor 1, [RH, Score=234, Expect=3e-79]} {Smed: dd_Smed_v6_2568_0_1, dd_Smed_v6_2568_0_1, [RH, Score=304, Expect=5e-107]} {RNA1509_15811, RNA1509_50129} {RNA1310_11952.1, RNA1509_15811, RNA1509_50129} {RNA1509_15811, RNA1509_50129, RNA815_9597}
12. MligTC455_42601 438 9.12 Mlig455_019930

Neo: -

Age: -

Region-enriched R7: 1.726/0.03073

 1.666 0.714 - - - 0.952 - Mlig455_019930 {REF} {Length: 618} {TRANSSPLICED} {Pfam: PLAC8 family [PF04749.19, score=78.5]} {Smed: dd_Smed_v6_477_0_1, dd_Smed_v6_477_0_1, [RH, Score=129, Expect=2e-40]} {RNA1509_14839} {RNA1310_21645} {RNA815_8854.1}
13. MligTC455_39406 44 0.92 Mlig455_026121

Neo: -

Age: Up-Down-Down

 RBMS1 0.991 - - - - 0.991 - Mlig455_026121 {REF} {Length: 2550} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=40.0]} {Human: ENSG00000153250, RBMS1, RNA binding motif single stranded interacting protein 1, [Score=106, Expect=1e-24]; ENSG00000144642, RBMS3, RNA binding motif single stranded interacting protein 3, [Score=102, Expect=5e-23]; ENSG00000076067, RBMS2, RNA binding motif single stranded interacting protein 2, [Score=102, Expect=4e-23]} {Mouse: ENSMUSG00000026970, Rbms1, RNA binding motif, single stranded interacting protein 1, [Score=110, Expect=4e-26]} {Dmel: FBgn0052423, shep, alan shepard, [Score=84.7, Expect=3e-17]} {Celegans: WBGene00006331, sup-26, SUPpressor, [Score=100, Expect=9e-23]} {Smed: dd_Smed_v6_3832_0_1, dd_Smed_v6_3832_0_1, [RH, Score=105, Expect=9e-25]} {RNA1310_39053} {RNA815_20087}
14. MligTC455_13739 27 0.57 Mlig455_003060

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-1.158

 GLUL 0.977 - - - - 0.977 - Mlig455_003060 {REF} {Length: 3073} {Pfam: Glutamine synthetase, beta-Grasp domain [PF03951.21, score=49.3]; Glutamine synthetase, catalytic domain [PF00120.26, score=46.0]} {Human: ENSG00000135821, GLUL, glutamate-ammonia ligase, [RH, Score=519, Expect=0.0]} {Mouse: ENSMUSG00000026473, Glul, glutamate-ammonia ligase (glutamine synthetase), [RH, Score=522, Expect=0.0]} {Dmel: FBgn0001145, Gs2, Glutamine synthetase 2, [RH, Score=529, Expect=0.0]} {Celegans: WBGene00001604, gln-3, Glutamine synthetase, [RH, Score=530, Expect=0.0]} {Smed: dd_Smed_v6_646_0_1, dd_Smed_v6_646_0_1, [RH, Score=573, Expect=0.0]} {RNA1509_3029, RNA1509_54181, RNA1509_7928} {RNA1310_32301, RNA1509_3029, RNA1509_54181, RNA1509_7928}
15. MligTC455_00775 4 0.09 Mlig455_060744

Neo: -

Age: -

 0.976 - - - - 0.976 - Mlig455_060744 {REF} {Length: 395} {NoTransDecoderORF}
16. MligTC455_48909 93 1.94 Mlig455_048405, Mlig455_049069

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.490

Region-enriched R2: 4.721/0.03142
Region-enriched R7: 4.417/0.01493

 ASIC1 0.974 - - - 0.974 - -

Mlig455_048405 {REF} {Length: 2732} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=163.8]} {Human: ENSG00000110881, ASIC1, acid sensing ion channel subunit 1, [Score=51.6, Expect=4e-06]} {Mouse: ENSMUSG00000028008, Asic5, acid-sensing (proton-gated) ion channel family member 5, [Score=55.8, Expect=1e-07]; ENSMUSG00000023017, Asic1, acid-sensing (proton-gated) ion channel 1, [Score=55.1, Expect=2e-07]} {Smed: dd_Smed_v6_12878_0_1, dd_Smed_v6_12878_0_1, [Score=112, Expect=8e-26]} {RNA1310_26678} {RNA815_24347}

Mlig455_049069 {REF} {Length: 2732} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=163.8]} {Human: ENSG00000110881, ASIC1, acid sensing ion channel subunit 1, [Score=51.2, Expect=5e-06]} {Mouse: ENSMUSG00000028008, Asic5, acid-sensing (proton-gated) ion channel family member 5, [Score=55.8, Expect=1e-07]; ENSMUSG00000023017, Asic1, acid-sensing (proton-gated) ion channel 1, [Score=55.1, Expect=2e-07]} {Smed: dd_Smed_v6_12878_0_1, dd_Smed_v6_12878_0_1, [Score=112, Expect=8e-26]} {RNA1310_26678} {RNA815_24347}
17. MligTC455_33072 230 4.8 Mlig455_052654

Neo: -

Age: -

Region-enriched R3: 2.742/0.03551

 0.97 - - - - 0.970 - Mlig455_052654 {REF} {Length: 650} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_57498} {RNA1310_24453.3} {RNA815_11507}
18. MligTC455_46343 76 1.57 Mlig455_008895, Mlig455_016535

Neo: -

Age: -

 0.968 - - - 0.968 - -

Mlig455_008895 {REF} {Length: 5485} {RNA1509_28528} {RNA1310_45684, RNA1509_28528} {RNA1509_28528, RNA815_21057}

Mlig455_016535 {REF} {Length: 2868} {RNA1509_28528} {RNA1310_45684} {RNA815_21057}
19. MligTC455_28590 8 0.17 Mlig455_036217

Neo: -

Age: -

 0.967 - - - 0.967 - - Mlig455_036217 {REF} {Length: 55} {NoTransDecoderORF} {RNA1509_51858}
20. MligTC455_41920 49 1.01 Mlig455_048072

Neo: -

Age: -

 0.965 - - - - 0.965 - Mlig455_048072 {REF} {Length: 2492} {Pfam: Innexin [PF00876.20, score=330.4]} {Dmel: FBgn0265274, Inx3, Innexin 3, [Score=88.6, Expect=1e-18]} {Celegans: WBGene00006749, unc-9, Innexin unc-9, [Score=254, Expect=8e-80]} {Smed: dd_Smed_v6_8019_0_1, dd_Smed_v6_8019_0_1, [Score=296, Expect=3e-95]} {RNA1509_56200} {RNA1310_9243} {RNA815_4486.1}
21. MligTC455_27544 39 0.81 Mlig455_032949

Neo: -

Age: -

 TRPM3 0.963 - - - - 0.963 - Mlig455_032949 {REF} {Length: 6125} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=51.9]; Ankyrin repeats (many copies) [PF13637.8, score=39.2]; Ankyrin repeat [PF13606.8, score=30.5]; Ankyrin repeats (many copies) [PF13857.8, score=27.8]; Ankyrin repeat [PF00023.32, score=26.4]} {Human: ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=75.9, Expect=4e-13]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=73.2, Expect=2e-12]} {Celegans: WBGene00001651, gon-2, Transient receptor potential channel, [Score=49.7, Expect=1e-05]} {Smed: dd_Smed_v6_26251_0_1, dd_Smed_v6_26251_0_1, [Score=94.7, Expect=1e-19]} {RNA1509_21241} {RNA1310_1739} {RNA815_2547.1}
22. MligTC455_05051 12 0.24 Mlig455_027802

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_027802 {REF} {Length: 2094} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=43.7]; Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=23.8]} {Celegans: WBGene00015323, frpr-1, Probable G-protein coupled receptor frpr-1, [Score=53.9, Expect=8e-08]} {Smed: dd_Smed_v6_19397_0_1, dd_Smed_v6_19397_0_1, [Score=89.0, Expect=3e-19]} {RNA1310_29651} {RNA815_43873}
23. MligTC455_23098 38 0.78 Mlig455_019169

Neo: -

Age: -

Region-enriched R2: 6.693/0.03013

 NR2E3 0.962 - - - 0.962 - - Mlig455_019169 {REF} {Length: 2731} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=97.7]; Ligand-binding domain of nuclear hormone receptor [PF00104.32, score=85.2]} {Human: ENSG00000278570, NR2E3, nuclear receptor subfamily 2 group E member 3, [RH, Score=220, Expect=3e-64]} {Mouse: ENSMUSG00000032292, Nr2e3, nuclear receptor subfamily 2, group E, member 3, [RH, Score=216, Expect=8e-63]} {Dmel: FBgn0034012, Hr51, Hormone receptor 51, [RH, Score=189, Expect=2e-51]} {Celegans: WBGene00001400, fax-1, Nuclear hormone receptor FAX-1, [RH, Score=179, Expect=1e-49]} {Smed: dd_Smed_v6_24412_0_1, dd_Smed_v6_24412_0_1, [RH, Score=196, Expect=3e-54]} {RNA1310_101745}
24. MligTC455_07452 152 3.17 Mlig455_044769, Mlig455_053667

Neo: -

Age: -

 0.961 - - - 0.961 - -

Mlig455_044769 {REF} {Length: 2297} {RNA1509_55535} {RNA1310_15100} {RNA815_7470.1}

Mlig455_053667 {REF} {Length: 2052} {Pfam: Lectin C-type domain [PF00059.23, score=35.3]} {RNA1509_55535} {RNA1310_15100} {RNA815_7470.1}
25. MligTC455_12475 21 0.45 Mlig455_044229

Neo: -

Age: -

 MYO3B 0.961 - - - - 0.961 - Mlig455_044229 {REF} {Length: 3648} {Pfam: Protein kinase domain [PF00069.27, score=122.1]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=80.0]; Ankyrin repeats (3 copies) [PF12796.9, score=55.7]; Ankyrin repeat [PF00023.32, score=39.7]; Ankyrin repeats (many copies) [PF13637.8, score=39.1]; Ankyrin repeat [PF13606.8, score=32.7]; Ankyrin repeats (many copies) [PF13857.8, score=32.7]; Fungal protein kinase [PF17667.3, score=24.8]; Caspase domain [PF00656.24, score=21.6]} {Human: ENSG00000071909, MYO3B, myosin IIIB, [Score=91.3, Expect=4e-18]; ENSG00000176601, MAP3K19, mitogen-activated protein kinase kinase kinase 19, [Score=90.9, Expect=2e-18]} {Mouse: ENSMUSG00000042064, Myo3b, myosin IIIB, [Score=92.8, Expect=9e-19]; ENSMUSG00000051590, Map3k19, mitogen-activated protein kinase kinase kinase 19, [Score=91.3, Expect=1e-18]} {Dmel: FBgn0014006, Ask1, Apoptotic signal-regulating kinase 1, [Score=85.5, Expect=1e-16]} {Celegans: WBGene00003247, mig-15, Serine/threonine-protein kinase mig-15, [Score=84.3, Expect=2e-16]} {Smed: dd_Smed_v6_5741_0_1, dd_Smed_v6_5741_0_1, [Score=85.5, Expect=4e-17]} {RNA1509_37841} {RNA1310_4442} {RNA815_11696}
26. MligTC455_49939 28 0.58 Mlig455_010579

Neo: -

Age: -

 GALNT1 0.961 - - - - 0.961 - Mlig455_010579 {REF} {Length: 2403} {Pfam: Glycosyl transferase family 2 [PF00535.28, score=94.3]} {Human: ENSG00000141429, GALNT1, polypeptide N-acetylgalactosaminyltransferase 1, [Score=246, Expect=3e-75]; ENSG00000136542, GALNT5, polypeptide N-acetylgalactosaminyltransferase 5, [Score=245, Expect=8e-72]; ENSG00000144278, GALNT13, polypeptide N-acetylgalactosaminyltransferase 13, [Score=243, Expect=7e-74]; ENSG00000164574, GALNT10, polypeptide N-acetylgalactosaminyltransferase 10, [Score=241, Expect=8e-73]; ENSG00000178234, GALNT11, polypeptide N-acetylgalactosaminyltransferase 11, [Score=238, Expect=2e-71]; ENSG00000115339, GALNT3, polypeptide N-acetylgalactosaminyltransferase 3, [Score=237, Expect=7e-71]} {Mouse: ENSMUSG00000026828, Galnt5, polypeptide N-acetylgalactosaminyltransferase 5, [Score=253, Expect=5e-75]; ENSMUSG00000026994, Galnt3, polypeptide N-acetylgalactosaminyltransferase 3, [Score=250, Expect=5e-76]; ENSMUSG00000000420, Galnt1, polypeptide N-acetylgalactosaminyltransferase 1, [Score=248, Expect=6e-76]; ENSMUSG00000060988, Galnt13, polypeptide N-acetylgalactosaminyltransferase 13, [Score=242, Expect=7e-74]; ENSMUSG00000020520, Galnt10, polypeptide N-acetylgalactosaminyltransferase 10, [Score=241, Expect=7e-73]} {Dmel: FBgn0050463, CG30463, [Score=292, Expect=3e-92]} {Celegans: WBGene00001630, gly-5, Polypeptide N-acetylgalactosaminyltransferase 5, [Score=303, Expect=9e-97]} {Smed: dd_Smed_v6_4615_0_1, dd_Smed_v6_4615_0_1, [Score=339, Expect=7e-111]} {RNA1310_80255}
27. MligTC455_08913 11 0.23 Mlig455_010158, Mlig455_010225

Neo: -

Age: -

 KCNN1 0.96 - - - 0.960 - -

Mlig455_010158 {REF} {Length: 2236} {Pfam: Calcium-activated SK potassium channel [PF03530.16, score=124.1]; Calmodulin binding domain [PF02888.18, score=76.7]; Ion channel [PF07885.18, score=53.1]} {Human: ENSG00000105642, KCNN1, potassium calcium-activated channel subfamily N member 1, [Score=384, Expect=2e-128]; ENSG00000080709, KCNN2, potassium calcium-activated channel subfamily N member 2, [Score=378, Expect=1e-125]; ENSG00000143603, KCNN3, potassium calcium-activated channel subfamily N member 3, [Score=374, Expect=3e-122]} {Mouse: ENSMUSG00000054477, Kcnn2, potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2, [Score=378, Expect=8e-126]; ENSMUSG00000000794, Kcnn3, potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3, [Score=372, Expect=1e-121]; ENSMUSG00000111706, Kcnn1, potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1, [Score=369, Expect=1e-122]; ENSMUSG00000002908, Kcnn1, potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1, [Score=369, Expect=1e-122]} {Dmel: FBgn0029761, SK, small conductance calcium-activated potassium channel, [Score=390, Expect=3e-131]} {Celegans: WBGene00008570, kcnl-2, KCNL-2 variant; KCNN (Potassium K ChaNNel, calcium activated)-Like, [Score=318, Expect=3e-102]} {Smed: dd_Smed_v6_13309_0_1, dd_Smed_v6_13309_0_1, [Score=451, Expect=4e-156]} {RNA1310_35938} {RNA815_50883}

Mlig455_010225 {REF} {Length: 2486} {Pfam: Calcium-activated SK potassium channel [PF03530.16, score=124.1]; Calmodulin binding domain [PF02888.18, score=76.7]; Ion channel [PF07885.18, score=53.1]} {Human: ENSG00000105642, KCNN1, potassium calcium-activated channel subfamily N member 1, [Score=384, Expect=2e-128]; ENSG00000080709, KCNN2, potassium calcium-activated channel subfamily N member 2, [Score=378, Expect=1e-125]; ENSG00000143603, KCNN3, potassium calcium-activated channel subfamily N member 3, [Score=374, Expect=3e-122]} {Mouse: ENSMUSG00000054477, Kcnn2, potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2, [Score=378, Expect=8e-126]; ENSMUSG00000000794, Kcnn3, potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3, [Score=372, Expect=1e-121]; ENSMUSG00000111706, Kcnn1, potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1, [Score=369, Expect=1e-122]; ENSMUSG00000002908, Kcnn1, potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1, [Score=369, Expect=1e-122]} {Dmel: FBgn0029761, SK, small conductance calcium-activated potassium channel, [Score=390, Expect=3e-131]} {Celegans: WBGene00008570, kcnl-2, KCNL-2 variant; KCNN (Potassium K ChaNNel, calcium activated)-Like, [Score=318, Expect=3e-102]} {Smed: dd_Smed_v6_13309_0_1, dd_Smed_v6_13309_0_1, [Score=451, Expect=4e-156]} {RNA1310_35938} {RNA815_50883}
28. MligTC455_30155 7 0.15 Mlig455_069271

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_069271 {REF} {Length: 3746} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=119.8]} {Smed: dd_Smed_v6_26484_0_6, dd_Smed_v6_26484_0_6, [Score=65.1, Expect=3e-12]} {RNA1509_47056} {RNA1310_5710.1, RNA1509_47056} {RNA1509_47056, RNA815_6291.1}
29. MligTC455_11808 21 0.44 Mlig455_048904

Neo: -

Age: -

 MAP2 0.958 - - - - 0.958 - Mlig455_048904 {REF} {Length: 1147} {Pfam: Tau and MAP protein, tubulin-binding repeat [PF00418.21, score=156.4]} {Human: ENSG00000078018, MAP2, microtubule associated protein 2, [Score=96.7, Expect=2e-23]} {Mouse: ENSMUSG00000015222, Map2, microtubule-associated protein 2, [Score=96.3, Expect=2e-23]; ENSMUSG00000032479, Map4, microtubule-associated protein 4, [Score=91.7, Expect=2e-22]} {Dmel: FBgn0266579, tau, [Score=112, Expect=2e-30]} {Celegans: WBGene00004212, ptl-1, Microtubule-associated protein, [Score=110, Expect=5e-29]} {Smed: dd_Smed_v6_7133_0_2, dd_Smed_v6_7133_0_2, [Score=95.5, Expect=5e-24]} {RNA1310_139049}
30. MligTC455_34233 101 2.11 Mlig455_053145

Neo: -

Age: Down-Up-Down

 ACR 0.956 - - - - 0.956 - Mlig455_053145 {REF} {Length: 1245} {Pfam: Trypsin [PF00089.28, score=175.3]} {Human: ENSG00000100312, ACR, acrosin, [Score=161, Expect=1e-45]; ENSG00000283539, ACR, acrosin, [Score=161, Expect=1e-45]; ENSG00000122194, PLG, plasminogen, [Score=156, Expect=8e-42]; ENSG00000198670, LPA, lipoprotein(a), [Score=155, Expect=2e-41]; ENSG00000178297, TMPRSS9, transmembrane serine protease 9, [Score=154, Expect=3e-41]} {Mouse: ENSMUSG00000059481, Plg, plasminogen, [Score=152, Expect=1e-40]; ENSMUSG00000059406, Tmprss9, transmembrane protease, serine 9, [Score=151, Expect=4e-40]; ENSMUSG00000016942, Tmprss6, transmembrane serine protease 6, [Score=149, Expect=1e-39]; ENSMUSG00000033177, Tmprss7, transmembrane serine protease 7, [Score=145, Expect=4e-38]} {Dmel: FBgn0036287, CG10663, [Score=132, Expect=6e-34]} {Celegans: WBGene00006619, try-1, TRYpsin-like protease, [Score=125, Expect=2e-33]} {Smed: dd_Smed_v6_2492_0_1, dd_Smed_v6_2492_0_1, [Score=175, Expect=3e-52]} {RNA1509_37786} {RNA1310_26421} {RNA815_13601}
31. MligTC455_43455 20 0.42 Mlig455_050690

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_050690 {REF} {Length: 2482} {Dmel: FBgn0259222, CG42322, [RH, Score=100, Expect=5e-22]} {Smed: dd_Smed_v6_18554_0_1, dd_Smed_v6_18554_0_1, [Score=82.4, Expect=1e-17]} {RNA1310_20749} {RNA815_38231}
32. MligTC455_22133 5172 107.76 Mlig455_005007, Mlig455_005046, Mlig455_005262

Neo: -

Age: logFC(26M/2M)=-0.260

Region-enriched R7: 1.553/0.00000

Regeneration-downregulated BL: -2.126

Regeneration-depleted BL: -2.126

 CPS1 0.953 - - - - 0.953 -

Mlig455_005007 {REF} {Length: 5305} {TRANSSPLICED} {Pfam: Carbamoyl-phosphate synthase L chain, ATP binding domain [PF02786.19, score=368.5]; Carbamoyl-phosphate synthase small chain, CPSase domain [PF00988.24, score=165.1]; Glutamine amidotransferase class-I [PF00117.30, score=131.3]; Carbamoyl-phosphate synthetase large chain, oligomerisation domain [PF02787.21, score=78.8]; D-ala D-ala ligase C-terminus [PF07478.15, score=63.3]; ATP-grasp domain [PF02222.24, score=63.2]; MGS-like domain [PF02142.24, score=48.6]; ATP-grasp in the biosynthetic pathway with Ter operon [PF15632.8, score=42.5]; Peptidase C26 [PF07722.15, score=18.5]} {Human: ENSG00000021826, CPS1, carbamoyl-phosphate synthase 1, [RH, Score=1884, Expect=0.0]} {Mouse: ENSMUSG00000025991, Cps1, carbamoyl-phosphate synthetase 1, [RH, Score=1883, Expect=0.0]} {Dmel: FBgn0003189, r, rudimentary, [Score=1486, Expect=0.0]} {Celegans: WBGene00004259, pyr-1, CAD protein Glutamine-dependent carbamoyl-phosphate synthase Aspartate carbamoyltransferase Dihydroorotase, [Score=1449, Expect=0.0]} {Smed: dd_Smed_v6_4349_0_1, dd_Smed_v6_4349_0_1, [RH, Score=2173, Expect=0.0]} {RNA1509_878} {RNA1310_1011.1} {RNA815_289.1}

Mlig455_005046 {REF} {Length: 5312} {TRANSSPLICED} {Pfam: Carbamoyl-phosphate synthase L chain, ATP binding domain [PF02786.19, score=368.7]; Carbamoyl-phosphate synthase small chain, CPSase domain [PF00988.24, score=165.0]; Glutamine amidotransferase class-I [PF00117.30, score=131.4]; Carbamoyl-phosphate synthetase large chain, oligomerisation domain [PF02787.21, score=78.8]; D-ala D-ala ligase C-terminus [PF07478.15, score=63.5]; ATP-grasp domain [PF02222.24, score=63.3]; ATP-grasp in the biosynthetic pathway with Ter operon [PF15632.8, score=42.7]; Peptidase C26 [PF07722.15, score=18.6]} {Human: ENSG00000021826, CPS1, carbamoyl-phosphate synthase 1, [Score=1772, Expect=0.0]} {Mouse: ENSMUSG00000025991, Cps1, carbamoyl-phosphate synthetase 1, [Score=1772, Expect=0.0]} {Dmel: FBgn0003189, r, rudimentary, [Score=1425, Expect=0.0]} {Celegans: WBGene00004259, pyr-1, CAD protein Glutamine-dependent carbamoyl-phosphate synthase Aspartate carbamoyltransferase Dihydroorotase, [Score=1392, Expect=0.0]} {Smed: dd_Smed_v6_4349_0_1, dd_Smed_v6_4349_0_1, [Score=2044, Expect=0.0]} {RNA1509_878} {RNA1310_1011.1, RNA1509_878} {RNA1509_878, RNA815_289.1}

Mlig455_005262 {REF} {Length: 5315} {TRANSSPLICED} {Pfam: Carbamoyl-phosphate synthase L chain, ATP binding domain [PF02786.19, score=368.5]; Carbamoyl-phosphate synthase small chain, CPSase domain [PF00988.24, score=165.1]; Glutamine amidotransferase class-I [PF00117.30, score=131.3]; Carbamoyl-phosphate synthetase large chain, oligomerisation domain [PF02787.21, score=78.8]; D-ala D-ala ligase C-terminus [PF07478.15, score=63.3]; ATP-grasp domain [PF02222.24, score=63.2]; MGS-like domain [PF02142.24, score=48.6]; ATP-grasp in the biosynthetic pathway with Ter operon [PF15632.8, score=42.5]; Peptidase C26 [PF07722.15, score=18.5]} {Human: ENSG00000021826, CPS1, carbamoyl-phosphate synthase 1, [RH, Score=1884, Expect=0.0]} {Mouse: ENSMUSG00000025991, Cps1, carbamoyl-phosphate synthetase 1, [RH, Score=1883, Expect=0.0]} {Dmel: FBgn0003189, r, rudimentary, [Score=1486, Expect=0.0]} {Celegans: WBGene00004259, pyr-1, CAD protein Glutamine-dependent carbamoyl-phosphate synthase Aspartate carbamoyltransferase Dihydroorotase, [Score=1449, Expect=0.0]} {Smed: dd_Smed_v6_4349_0_1, dd_Smed_v6_4349_0_1, [RH, Score=2173, Expect=0.0]} {RNA1509_878} {RNA1310_1011.1} {RNA815_289.1}
33. MligTC455_25184 563 11.72 Mlig455_005207

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-1.052

 0.953 - - - - 0.953 - Mlig455_005207 {REF} {Length: 3047} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=136.2]} {Celegans: WBGene00009073, delm-1, DEgenerin Linked to Mechanosensation, [Score=49.7, Expect=5e-06]} {Smed: dd_Smed_v6_20466_0_2, dd_Smed_v6_20466_0_2, [Score=84.3, Expect=5e-17]} {RNA1509_9013} {RNA1310_7298, RNA1509_9013} {RNA1509_9013, RNA815_2337}
34. MligTC455_30972 168 3.51 Mlig455_029069, Mlig455_068645, Mlig455_070497

Neo: -

Age: -

Region-enriched R6: 3.424/0.00684

 PRKG1 0.951 0.951 - - - - -

Mlig455_029069 {REF} {Length: 1379} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=34.0]} {RNA1310_15753} {RNA815_42273}

Mlig455_068645 {REF} {Length: 2480} {Pfam: Protein kinase domain [PF00069.27, score=231.3]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=118.8]; Kinase-like [PF14531.8, score=24.6]} {Human: ENSG00000185532, PRKG1, protein kinase cGMP-dependent 1, [Score=556, Expect=0.0]} {Mouse: ENSMUSG00000052920, Prkg1, protein kinase, cGMP-dependent, type I, [Score=560, Expect=0.0]} {Dmel: FBgn0000721, for, foraging, [Score=557, Expect=0.0]} {Celegans: WBGene00001173, egl-4, cGMP-dependent protein kinase egl-4, [Score=506, Expect=1e-177]} {Smed: dd_Smed_v6_7139_0_1, dd_Smed_v6_7139_0_1, [Score=594, Expect=0.0]} {RNA1509_25015} {RNA1310_7906} {RNA815_2348.1}

Mlig455_070497 {REF} {Length: 247} {Pfam: Cyclic nucleotide-binding domain [PF00027.31, score=22.9]} {Human: ENSG00000185532, PRKG1, protein kinase cGMP-dependent 1, [Score=53.9, Expect=5e-10]} {Mouse: ENSMUSG00000052920, Prkg1, protein kinase, cGMP-dependent, type I, [Score=53.9, Expect=4e-10]} {Dmel: FBgn0000721, for, foraging, [Score=45.1, Expect=4e-07]} {Celegans: WBGene00015650, pkg-2, Protein Kinase, cGMP-dependent, [Score=42.0, Expect=5e-06]} {Smed: dd_Smed_v6_7139_0_1, dd_Smed_v6_7139_0_1, [Score=47.8, Expect=3e-08]} {RNA1509_25015} {RNA1310_6190.1} {RNA815_2348.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA