M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_46107

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_46107 48 0.99 Mlig455_059438

Neo: -

Age: -

 NEUROD1 Mlig455_059438 {REF} {Length: 2657} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=55.6]} {Human: ENSG00000162992, NEUROD1, neuronal differentiation 1, [Score=64.3, Expect=9e-11]; ENSG00000123307, NEUROD4, neuronal differentiation 4, [Score=63.2, Expect=2e-10]; ENSG00000181965, NEUROG1, neurogenin 1, [Score=63.2, Expect=7e-11]; ENSG00000146618, FERD3L, Fer3 like bHLH transcription factor, [Score=62.8, Expect=3e-11]; ENSG00000171532, NEUROD2, neuronal differentiation 2, [Score=61.6, Expect=9e-10]; ENSG00000168267, PTF1A, pancreas associated transcription factor 1a, [Score=61.6, Expect=6e-10]} {Mouse: ENSMUSG00000068079, Tcf15, transcription factor 15, [Score=65.1, Expect=7e-12]; ENSMUSG00000034701, Neurod1, neurogenic differentiation 1, [Score=64.3, Expect=6e-11]; ENSMUSG00000046518, Ferd3l, Fer3 like bHLH transcription factor, [Score=63.5, Expect=1e-11]; ENSMUSG00000048904, Neurog1, neurogenin 1, [Score=63.2, Expect=6e-11]; ENSMUSG00000048015, Neurod4, neurogenic differentiation 4, [Score=62.4, Expect=2e-10]; ENSMUSG00000026735, Ptf1a, pancreas specific transcription factor, 1a, [Score=62.0, Expect=3e-10]} {Dmel: FBgn0037475, Fer1, 48 related 1, [Score=72.4, Expect=4e-14]} {Celegans: WBGene00001954, hlh-10, Helix Loop Helix, [RH, Score=55.5, Expect=9e-09]} {Smed: dd_Smed_v6_6869_0_1, dd_Smed_v6_6869_0_1, [RH, Score=67.4, Expect=4e-13]} {RNA1509_59553} {RNA1310_27559} {RNA815_43865.1}

Cumulative graph for MligTC455_46107

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -4.924 1.354 0.99994 1.00000
RegionR2 2.743 1.354 0.23145 0.60400
RegionR3 1.339 1.354 0.42536 0.94688
RegionR4 -0.582 1.354 0.82177 1.00000
RegionR5 2.14 1.354 0.13667 0.37865
RegionR6 1.682 1.354 0.33945 0.92689
RegionR7 -1.056 1.354 0.99966 1.00000
RegionR8 -1.343 1.354 0.99968 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 2.885 1.354 0.99986 1.00000
RegenerationR2 3.001 1.354 0.01803 0.22072
RegenerationR3 4.466 1.354 0.00270 0.09085
RegenerationR4 4.046 1.354 0.00870 0.13952
RegenerationR5 2.146 1.354 0.06417 0.39998
RegenerationR6 2.978 1.354 0.04955 0.27865
RegenerationBL 4.585 1.354 0.02805 0.18555
RegenerationTP 6.057 1.354 0.01031 0.17257


Genes with expression patterns similar to MligTC455_46107

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_46107 48 0.99 Mlig455_059438

Neo: -

Age: -

 NEUROD1 4 - 1.000 - 1.000 1.000 1.000 Mlig455_059438 {REF} {Length: 2657} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=55.6]} {Human: ENSG00000162992, NEUROD1, neuronal differentiation 1, [Score=64.3, Expect=9e-11]; ENSG00000123307, NEUROD4, neuronal differentiation 4, [Score=63.2, Expect=2e-10]; ENSG00000181965, NEUROG1, neurogenin 1, [Score=63.2, Expect=7e-11]; ENSG00000146618, FERD3L, Fer3 like bHLH transcription factor, [Score=62.8, Expect=3e-11]; ENSG00000171532, NEUROD2, neuronal differentiation 2, [Score=61.6, Expect=9e-10]; ENSG00000168267, PTF1A, pancreas associated transcription factor 1a, [Score=61.6, Expect=6e-10]} {Mouse: ENSMUSG00000068079, Tcf15, transcription factor 15, [Score=65.1, Expect=7e-12]; ENSMUSG00000034701, Neurod1, neurogenic differentiation 1, [Score=64.3, Expect=6e-11]; ENSMUSG00000046518, Ferd3l, Fer3 like bHLH transcription factor, [Score=63.5, Expect=1e-11]; ENSMUSG00000048904, Neurog1, neurogenin 1, [Score=63.2, Expect=6e-11]; ENSMUSG00000048015, Neurod4, neurogenic differentiation 4, [Score=62.4, Expect=2e-10]; ENSMUSG00000026735, Ptf1a, pancreas specific transcription factor, 1a, [Score=62.0, Expect=3e-10]} {Dmel: FBgn0037475, Fer1, 48 related 1, [Score=72.4, Expect=4e-14]} {Celegans: WBGene00001954, hlh-10, Helix Loop Helix, [RH, Score=55.5, Expect=9e-09]} {Smed: dd_Smed_v6_6869_0_1, dd_Smed_v6_6869_0_1, [RH, Score=67.4, Expect=4e-13]} {RNA1509_59553} {RNA1310_27559} {RNA815_43865.1}
2. MligTC455_15494 299 6.23 Mlig455_003802

Neo: -

Age: -

 1.77 - - - - 0.961 0.809 Mlig455_003802 {REF} {Length: 2576} {RNA1509_23541} {RNA1310_23341.1} {RNA815_11967.1}
3. MligTC455_18378 93 1.93 Mlig455_020161

Neo: -

Age: -

 1.699 - - - 0.740 0.959 - Mlig455_020161 {REF} {Length: 1611} {RNA1509_32268, RNA1509_3350, RNA1509_4391, RNA1509_7279} {RNA1310_35840, RNA1509_32268, RNA1509_3350, RNA1509_4391, RNA1509_7279} {RNA1509_32268, RNA1509_3350, RNA1509_4391, RNA1509_7279, RNA815_23985}
4. MligTC455_36584 1177 24.51 Mlig455_011533, Mlig455_049984

Neo: -

Age: -

 1.669 - - - - 0.968 0.701

Mlig455_011533 {REF} {Length: 1933} {TRANSSPLICED} {Pfam: SOCE-associated regulatory factor of calcium homoeostasis [PF06682.14, score=19.6]} {RNA1509_29499} {RNA1310_32403} {RNA815_16915.1}

Mlig455_049984 {REF} {Length: 1918} {TRANSSPLICED} {Pfam: SOCE-associated regulatory factor of calcium homoeostasis [PF06682.14, score=20.3]} {RNA1509_29499, RNA1509_50788} {RNA1310_32403, RNA1509_50788} {RNA1509_50788, RNA815_16915.1}
5. MligTC455_29968 40 0.83 Mlig455_061290

Neo: -

Age: -

 0.973 - - - - 0.973 - Mlig455_061290 {REF} {Length: 1762} {Pfam: Protein of unknown function DUF16 [PF01519.18, score=19.4]} {RNA1509_49894} {RNA1310_436.1, RNA1509_49894} {RNA1509_49894, RNA815_16288}
6. MligTC455_34109 388 8.07 Mlig455_036207, Mlig455_060306, Mlig455_064034, Mlig455_064415

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.742

 NYNRIN 0.972 - - - - 0.972 -

Mlig455_036207 {REF} {Length: 2552} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=114.4]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=112.9]; Integrase zinc binding domain [PF17921.3, score=66.2]; Integrase core domain [PF00665.28, score=46.4]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=28.2]; H2C2 zinc finger [PF09337.12, score=26.7]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=243, Expect=9e-68]} {RNA1509_34066} {RNA1310_1125} {RNA815_16355}

Mlig455_060306 {REF} {Length: 3314} {Pfam: Integrase core domain [PF00665.28, score=45.6]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=68.6, Expect=6e-12]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=66.6, Expect=2e-11]} {Smed: dd_Smed_v6_20599_0_1, dd_Smed_v6_20599_0_1, [Score=149, Expect=1e-41]} {RNA1509_45628} {RNA1310_4631.1} {RNA815_1825.1}

Mlig455_064034 {REF} {Length: 907} {Pfam: Integrase zinc binding domain [PF17921.3, score=65.0]; Integrase core domain [PF00665.28, score=41.0]; H2C2 zinc finger [PF09337.12, score=27.1]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=63.5, Expect=1e-10]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=65.1, Expect=3e-11]} {Smed: dd_Smed_v6_20599_0_1, dd_Smed_v6_20599_0_1, [Score=94.0, Expect=8e-22]} {RNA1310_90344}

Mlig455_064415 {REF} {Length: 9411} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=113.8]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=112.2]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=91.9]; Integrase zinc binding domain [PF17921.3, score=67.5]; Integrase core domain [PF00665.28, score=45.5]; H2C2 zinc finger [PF09337.12, score=29.0]; gag-polyprotein putative aspartyl protease [PF13975.8, score=26.5]; Aspartyl protease [PF13650.8, score=22.7]; Retroviral aspartyl protease [PF00077.22, score=19.9]} {Smed: dd_Smed_v6_1574_6_38, dd_Smed_v6_1574_6_38, [RH, Score=382, Expect=7e-119]} {RNA1509_34066} {RNA1310_1125} {RNA815_1825.1}
7. MligTC455_36487 138 2.88 Mlig455_013543

Neo: -

Age: -

 0.972 - - - - 0.972 - Mlig455_013543 {REF} {Length: 2784} {NoTransDecoderORF} {RNA1509_55514} {RNA1310_26481} {RNA815_10967.1}
8. MligTC455_40284 142 2.97 Mlig455_045795

Neo: -

Age: -

 0.972 - - - - 0.972 - Mlig455_045795 {REF} {Length: 965} {NoTransDecoderORF} {RNA1509_26792} {RNA1310_13078}
9. MligTC455_26270 489 10.18 Mlig455_001702, Mlig455_024185, Mlig455_049718, Mlig455_052850

Neo: -

Age: -

 0.97 - - - - 0.970 -

Mlig455_001702 {REF} {Length: 948} {RNA1310_34488} {RNA815_20734.1}

Mlig455_024185 {REF} {Length: 352} {RNA1509_22707} {RNA1310_34488} {RNA815_20734.1}

Mlig455_049718 {REF} {Length: 3736} {RNA1509_44743} {RNA1310_5450.1} {RNA815_7078}

Mlig455_052850 {REF} {Length: 2339} {RNA1509_33210} {RNA1310_34118.1} {RNA815_20734.1}
10. MligTC455_02981 502 10.46 Mlig455_021254

Neo: -

Age: -

Region-enriched R5: 1.023/0.01867

 MRPL55 0.962 - - - - 0.962 - Mlig455_021254 {REF} {Length: 901} {TRANSSPLICED} {Pfam: Mitochondrial ribosomal protein L55 [PF09776.11, score=84.4]} {Human: ENSG00000162910, MRPL55, mitochondrial ribosomal protein L55, [RH, Score=63.5, Expect=2e-13]} {Mouse: ENSMUSG00000036860, Mrpl55, mitochondrial ribosomal protein L55, [RH, Score=63.2, Expect=2e-13]} {Dmel: FBgn0038678, mRpL55, mitochondrial ribosomal protein L55, [RH, Score=68.6, Expect=7e-16]} {Celegans: WBGene00022045, mrpl-55, Mitochondrial Ribosomal Protein, Large, [RH, Score=69.7, Expect=3e-16]} {Smed: dd_Smed_v6_4982_0_1, dd_Smed_v6_4982_0_1, [RH, Score=55.1, Expect=9e-11]} {RNA1509_8283} {RNA1310_15061, RNA1509_8283} {RNA1509_8283, RNA815_18521}
11. MligTC455_02982 496 10.34 Mlig455_021516

Neo: Int S/G2/M

Age: Down-Up-Up

 MRPL55 0.962 - - - - 0.962 - Mlig455_021516 {REF} {Length: 892} {TRANSSPLICED} {Pfam: Mitochondrial ribosomal protein L55 [PF09776.11, score=84.4]} {Human: ENSG00000162910, MRPL55, mitochondrial ribosomal protein L55, [RH, Score=63.2, Expect=3e-13]} {Mouse: ENSMUSG00000036860, Mrpl55, mitochondrial ribosomal protein L55, [RH, Score=62.8, Expect=2e-13]} {Dmel: FBgn0038678, mRpL55, mitochondrial ribosomal protein L55, [RH, Score=68.2, Expect=8e-16]} {Celegans: WBGene00022045, mrpl-55, Mitochondrial Ribosomal Protein, Large, [RH, Score=69.7, Expect=3e-16]} {Smed: dd_Smed_v6_4982_0_1, dd_Smed_v6_4982_0_1, [RH, Score=54.7, Expect=1e-10]} {RNA1509_8283} {RNA1310_15061} {RNA815_18521}
12. MligTC455_37718 606 12.62 Mlig455_020685, Mlig455_024415, Mlig455_032310, Mlig455_033332, Mlig455_047018, Mlig455_056964

Neo: -

Age: -

 0.961 - - - - 0.961 -

Mlig455_020685 {REF} {Length: 2294} {RNA1509_57867} {RNA1310_1374.1} {RNA815_23786}

Mlig455_024415 {REF} {Length: 2109} {RNA1509_57867} {RNA1310_1374.1} {RNA815_23786}

Mlig455_032310 {REF} {Length: 201} {NoTransDecoderORF} {RNA1509_57867} {RNA1310_21106} {RNA815_43995.2}

Mlig455_033332 {REF} {Length: 2377} {RNA1509_57867} {RNA1310_24332} {RNA815_23786}

Mlig455_047018 {REF} {Length: 1021} {TRANSSPLICED} {RNA1509_47311} {RNA1310_36606.2} {RNA815_21848}

Mlig455_056964 {REF} {Length: 2243} {RNA1509_40552} {RNA1310_1374.1} {RNA815_23786}
13. MligTC455_29067 766 15.96 Mlig455_052924, Mlig455_062051

Neo: -

Age: -

 0.959 - - - - 0.959 -

Mlig455_052924 {REF} {Length: 5034} {Pfam: PHD-finger [PF00628.31, score=24.4]; Phorbol esters/diacylglycerol binding domain (C1 domain) [PF00130.24, score=22.7]; PHD - plant homeodomain finger protein [PF07227.13, score=19.7]} {RNA1509_29353} {RNA1310_4523} {RNA815_17419}

Mlig455_062051 {REF} {Length: 5910} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=82.0]} {Smed: dd_Smed_v6_16441_0_5, dd_Smed_v6_16441_0_5, [Score=94.4, Expect=3e-21]} {RNA1509_23986} {RNA1310_4523} {RNA815_17419}
14. MligTC455_30302 162 3.38 Mlig455_068935

Neo: Int S/G2/M

Age: Up-Down-Down

Region-enriched R5: 2.053/0.03938

 0.959 - - - - 0.959 - Mlig455_068935 {REF} {Length: 4558} {TRANSSPLICED} {Pfam: 'Cold-shock' DNA-binding domain [PF00313.24, score=31.8]; Zinc knuckle [PF13696.8, score=23.3]; Zinc knuckle [PF00098.25, score=23.0]} {RNA1509_4878} {RNA1310_542.1} {RNA815_66.1}
15. MligTC455_22480 130 2.7 Mlig455_062188

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_062188 {REF} {Length: 622} {NoTransDecoderORF} {RNA1509_40555} {RNA1310_89577}
16. MligTC455_28684 179 3.74 Mlig455_027569

Neo: -

Age: Down-Up-Up

 0.956 - - - - 0.956 - Mlig455_027569 {REF} {Length: 1247} {RNA1509_49958} {RNA1310_47608, RNA1509_49958} {RNA1509_49958, RNA815_33601}
17. MligTC455_35617 108 2.24 Mlig455_048363

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_048363 {REF} {Length: 5379} {RNA1310_66856}
18. MligTC455_28156 802 16.71 Mlig455_003147, Mlig455_032425, Mlig455_034911, Mlig455_035373, Mlig455_051607, Mlig455_054980, Mlig455_057443

Neo: -

Age: -

 0.955 - - - - 0.955 -

Mlig455_003147 {REF} {Length: 967} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_57922} {RNA1310_17737.1} {RNA815_39121}

Mlig455_032425 {REF} {Length: 1839} {NoTransDecoderORF} {RNA1509_57922} {RNA1310_17737.1} {RNA815_2198.1}

Mlig455_034911 {REF} {Length: 964} {NoTransDecoderORF} {RNA1509_57922} {RNA1310_17737.1} {RNA815_39121}

Mlig455_035373 {REF} {Length: 283} {NoTransDecoderORF} {RNA1509_57922} {RNA1310_17062} {RNA815_22796.1}

Mlig455_051607 {REF} {Length: 334} {NoTransDecoderORF} {RNA1509_57922} {RNA1310_17737.3} {RNA815_39121}

Mlig455_054980 {REF} {Length: 345} {NoTransDecoderORF} {RNA1509_57922} {RNA1310_17737.3} {RNA815_39121}

Mlig455_057443 {REF} {Length: 938} {NoTransDecoderORF} {RNA1509_20409} {RNA1310_17737.3} {RNA815_39121}
19. MligTC455_37739 214 4.46 Mlig455_042190, Mlig455_059011

Neo: -

Age: -

 0.954 - - - - 0.954 -

Mlig455_042190 {REF} {Length: 3209} {NoTransDecoderORF} {RNA1509_18414} {RNA1310_53850} {RNA815_19425}

Mlig455_059011 {REF} {Length: 3198} {NoTransDecoderORF} {RNA1509_18414} {RNA1310_53850} {RNA815_19425}
20. MligTC455_00601 133 2.77 Mlig455_054054

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_054054 {REF} {Length: 2328} {RNA1509_1755} {RNA1310_2220.1} {RNA815_703.1}
21. MligTC455_45905 70 1.47 Mlig455_059611

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_059611 {REF} {Length: 1864} {RNA1509_33398} {RNA1310_24396.1} {RNA815_21615}
22. MligTC455_55577 29 0.6 Mlig455_023740

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_023740 {REF} {Length: 55} {NoTransDecoderORF} {RNA1509_57004} {RNA1310_15891} {RNA815_43082}
23. MligTC455_50971 1166 24.29 Mlig455_045333

Neo: Int S/G2/M

Age: Down-Up-Down

Regeneration-enriched TP: 1.837
Regeneration-enriched R2: 1.623

 0.95 - - - - 0.950 - Mlig455_045333 {REF} {Length: 1639} {Pfam: Basic region leucine zipper [PF07716.17, score=32.1]} {RNA1509_10047} {RNA1310_15657.2} {RNA815_6640.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA