TomoSeq data search

Data search

Results for MligTC455_49224

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_49224

228

4.75

Mlig455_020671, Mlig455_048768

Neo: -

Age: -

VPS41

Mlig455_020671 {REF} {Length: 3300} {TRANSSPLICED} {Pfam: Region in Clathrin and VPS [PF00637.22, score=59.8]; zinc-RING finger domain [PF14634.8, score=22.0]} {Human: ENSG00000006715, VPS41, VPS41, HOPS complex subunit, [RH, Score=464, Expect=5e-150]} {Mouse: ENSMUSG00000041236, Vps41, VPS41 HOPS complex subunit, [RH, Score=459, Expect=3e-148]} {Dmel: FBgn0002566, lt, light, [RH, Score=401, Expect=2e-126]} {Celegans: WBGene00017974, vps-41, Vacuolar protein sorting-associated protein 41 homolog, [RH, Score=303, Expect=2e-89]} {Smed: dd_Smed_v6_3481_0_1, dd_Smed_v6_3481_0_1, [RH, Score=390, Expect=7e-122]} {RNA1509_34132} {RNA1310_6719} {RNA815_4867}

Mlig455_048768 {REF} {Length: 3692} {Pfam: Region in Clathrin and VPS [PF00637.22, score=59.8]; zinc-RING finger domain [PF14634.8, score=22.0]} {Human: ENSG00000006715, VPS41, VPS41, HOPS complex subunit, [RH, Score=464, Expect=5e-150]} {Mouse: ENSMUSG00000041236, Vps41, VPS41 HOPS complex subunit, [RH, Score=459, Expect=4e-148]} {Dmel: FBgn0002566, lt, light, [RH, Score=401, Expect=2e-126]} {Celegans: WBGene00017974, vps-41, Vacuolar protein sorting-associated protein 41 homolog, [RH, Score=302, Expect=5e-89]} {Smed: dd_Smed_v6_3481_0_1, dd_Smed_v6_3481_0_1, [RH, Score=389, Expect=2e-121]} {RNA1509_34132} {RNA1310_6719, RNA1509_34132} {RNA1509_34132, RNA815_4867}

Cumulative graph for MligTC455_49224

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	0.746	2.839	0.57507	1.00000
RegionR2	0.169	2.839	0.78656	1.00000
RegionR3	-0.314	2.839	0.50531	0.99686
RegionR4	-0.027	2.839	0.96809	1.00000
RegionR5	-0.286	2.839	0.49014	0.85343
RegionR6	-0.307	2.839	0.52304	1.00000
RegionR7	0.289	2.839	0.64642	1.00000
RegionR8	-0.271	2.839	0.73367	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-5.241	2.839	0.31927	1.00000
RegenerationR2	0.265	2.839	0.61085	0.91976
RegenerationR3	0.771	2.839	0.18015	0.61617
RegenerationR4	0.024	2.839	0.96272	1.00000
RegenerationR5	0.512	2.839	0.30635	0.73345
RegenerationR6	0.342	2.839	0.58790	0.86252
RegenerationBL	-1.634	2.839	0.18618	0.51752
RegenerationTP	0.164	2.839	0.82986	1.00000

Genes with expression patterns similar to MligTC455_49224

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_49224	228	4.75	Mlig455_020671, Mlig455_048768	Neo: - Age: -	VPS41	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_020671 {REF} {Length: 3300} {TRANSSPLICED} {Pfam: Region in Clathrin and VPS [PF00637.22, score=59.8]; zinc-RING finger domain [PF14634.8, score=22.0]} {Human: ENSG00000006715, VPS41, VPS41, HOPS complex subunit, [RH, Score=464, Expect=5e-150]} {Mouse: ENSMUSG00000041236, Vps41, VPS41 HOPS complex subunit, [RH, Score=459, Expect=3e-148]} {Dmel: FBgn0002566, lt, light, [RH, Score=401, Expect=2e-126]} {Celegans: WBGene00017974, vps-41, Vacuolar protein sorting-associated protein 41 homolog, [RH, Score=303, Expect=2e-89]} {Smed: dd_Smed_v6_3481_0_1, dd_Smed_v6_3481_0_1, [RH, Score=390, Expect=7e-122]} {RNA1509_34132} {RNA1310_6719} {RNA815_4867} Mlig455_048768 {REF} {Length: 3692} {Pfam: Region in Clathrin and VPS [PF00637.22, score=59.8]; zinc-RING finger domain [PF14634.8, score=22.0]} {Human: ENSG00000006715, VPS41, VPS41, HOPS complex subunit, [RH, Score=464, Expect=5e-150]} {Mouse: ENSMUSG00000041236, Vps41, VPS41 HOPS complex subunit, [RH, Score=459, Expect=4e-148]} {Dmel: FBgn0002566, lt, light, [RH, Score=401, Expect=2e-126]} {Celegans: WBGene00017974, vps-41, Vacuolar protein sorting-associated protein 41 homolog, [RH, Score=302, Expect=5e-89]} {Smed: dd_Smed_v6_3481_0_1, dd_Smed_v6_3481_0_1, [RH, Score=389, Expect=2e-121]} {RNA1509_34132} {RNA1310_6719, RNA1509_34132} {RNA1509_34132, RNA815_4867}
2.	MligTC455_46218	295	6.16	Mlig455_024242	Neo: - Age: Down-Up-Down		0.972	-	-	-	-	-	0.972	Mlig455_024242 {REF} {Length: 2330} {Pfam: Apoptosis regulator proteins, Bcl-2 family [PF00452.21, score=22.9]} {RNA1509_15530} {RNA1310_7440.1} {RNA815_19537}
3.	MligTC455_40249	559	11.65	Mlig455_012380, Mlig455_012801	Neo: - Age: logFC(26M/2M)=-0.676		0.964	-	-	-	-	-	0.964	Mlig455_012380 {REF} {Length: 2851} {RNA1310_16607.1} {RNA815_18561} Mlig455_012801 {REF} {Length: 4038} {Pfam: Cornifin (SPRR) family [PF02389.17, score=37.0]} {RNA1509_51501} {RNA1310_16607.1} {RNA815_18561}
4.	MligTC455_19369	174	3.62	Mlig455_027643	Neo: - Age: -		0.963	-	-	-	0.963	-	-	Mlig455_027643 {REF} {Length: 677} {RNA1509_8759} {RNA1310_60559} {RNA815_28038}
5.	MligTC455_49116	345	7.19	Mlig455_044608	Neo: - Age: logFC(26M/2M)=0.329		0.961	0.961	-	-	-	-	-	Mlig455_044608 {REF} {Length: 2338} {TRANSSPLICED} {RNA1509_28377, RNA1509_45585} {RNA1310_9768, RNA1509_28377, RNA1509_45585} {RNA1509_28377, RNA1509_45585, RNA815_3390}
6.	MligTC455_39404	172	3.59	Mlig455_039240, Mlig455_053901	Neo: - Age: Down-Up-Down	ASIC1	0.96	-	-	-	-	-	0.960	Mlig455_039240 {REF} {Length: 2885} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=208.9]} {Human: ENSG00000110881, ASIC1, acid sensing ion channel subunit 1, [Score=61.2, Expect=4e-09]} {Mouse: ENSMUSG00000023017, Asic1, acid-sensing (proton-gated) ion channel 1, [Score=58.5, Expect=2e-08]} {Celegans: WBGene00003168, mec-4, Degenerin mec-4, [Score=64.3, Expect=2e-10]} {Smed: dd_Smed_v6_12878_0_1, dd_Smed_v6_12878_0_1, [Score=116, Expect=5e-27]} {RNA1509_33503} {RNA1310_10134} {RNA815_5943} Mlig455_053901 {REF} {Length: 3001} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=208.9]} {Human: ENSG00000110881, ASIC1, acid sensing ion channel subunit 1, [Score=61.2, Expect=4e-09]} {Mouse: ENSMUSG00000023017, Asic1, acid-sensing (proton-gated) ion channel 1, [Score=58.5, Expect=2e-08]} {Celegans: WBGene00003168, mec-4, Degenerin mec-4, [Score=64.3, Expect=2e-10]} {Smed: dd_Smed_v6_12878_0_1, dd_Smed_v6_12878_0_1, [Score=116, Expect=5e-27]} {RNA1509_33503} {RNA1310_10134, RNA1509_33503} {RNA1509_33503, RNA815_5943}
7.	MligTC455_29610	243	5.06	Mlig455_031720	Neo: - Age: Up-Down-Up	RBM12	0.959	-	-	0.959	-	-	-	Mlig455_031720 {REF} {Length: 8472} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=46.3]} {Human: ENSG00000244462, RBM12, RNA binding motif protein 12, [RH, Score=99.8, Expect=5e-22]} {Mouse: ENSMUSG00000089824, Rbm12, RNA binding motif protein 12, [RH, Score=97.8, Expect=1e-21]} {Dmel: FBgn0035235, CG7879, [Score=116, Expect=8e-26]} {Celegans: WBGene00013703, Y106G6D.7, [Score=97.4, Expect=5e-20]} {Smed: dd_Smed_v6_5908_0_1, dd_Smed_v6_5908_0_1, [RH, Score=108, Expect=8e-24]} {RNA1509_8705} {RNA1310_1058.1, RNA1509_8705} {RNA1509_8705, RNA815_1326.1}
8.	MligTC455_17518	230	4.8	Mlig455_060106	Neo: Int S/G2/M Age: -		0.956	-	-	-	-	-	0.956	Mlig455_060106 {REF} {Length: 994} {NoTransDecoderORF} {RNA1509_50608} {RNA1310_58212} {RNA815_63349}
9.	MligTC455_44104	493	10.27	Mlig455_067786	Neo: Int S/G2/M Age: Down-Up-Up		0.956	0.956	-	-	-	-	-	Mlig455_067786 {REF} {Length: 1267} {TRANSSPLICED} {Pfam: Proteasome assembly chaperone 4 [PF16094.7, score=136.9]} {Smed: dd_Smed_v6_8414_0_1, dd_Smed_v6_8414_0_1, [RH, Score=64.3, Expect=6e-12]} {RNA1509_19745} {RNA1310_9215} {RNA815_22970}
10.	MligTC455_44783	110	2.29	Mlig455_034984	Neo: - Age: Down-Up-Down		0.956	0.956	-	-	-	-	-	Mlig455_034984 {REF} {Length: 4235} {Pfam: CHY zinc finger [PF05495.14, score=51.7]} {RNA1509_57768} {RNA1310_6209, RNA1509_57768} {RNA1509_57768, RNA815_7285.1}
11.	MligTC455_50094	148	3.09	Mlig455_042020	Neo: Irradiation Age: - Region-enriched R4: 2.698/0.01391	RNF216	0.954	-	-	-	-	-	0.954	Mlig455_042020 {REF} {Length: 2245} {TRANSSPLICED} {Pfam: IBR domain, a half RING-finger domain [PF01485.23, score=27.5]; FtsX extracellular domain [PF18075.3, score=19.7]} {Human: ENSG00000011275, RNF216, ring finger protein 216, [Score=174, Expect=5e-45]} {Mouse: ENSMUSG00000045078, Rnf216, ring finger protein 216, [Score=171, Expect=2e-44]} {Dmel: FBgn0025186, ari-2, ariadne 2, [Score=60.1, Expect=4e-09]} {Celegans: WBGene00016157, C27A12.7, [Score=67.0, Expect=2e-11]} {Smed: dd_Smed_v6_4224_0_1, dd_Smed_v6_4224_0_1, [Score=60.8, Expect=1e-09]} {RNA1509_15865} {RNA1310_11127} {RNA815_4010.1}
12.	MligTC455_47579	133	2.76	Mlig455_041880	Neo: - Age: Down-Up-Down		0.953	-	-	-	-	-	0.953	Mlig455_041880 {REF} {Length: 2196} {TRANSSPLICED} {RNA1509_11215, RNA1509_36784} {RNA1310_37626, RNA1509_11215} {RNA1509_11215, RNA815_15592}
13.	MligTC455_16554	269	5.61	Mlig455_062961	Neo: - Age: -	UBE2C	0.951	0.951	-	-	-	-	-	Mlig455_062961 {REF} {Length: 1150} {TRANSSPLICED} {Pfam: Ubiquitin-conjugating enzyme [PF00179.28, score=141.2]} {Human: ENSG00000175063, UBE2C, ubiquitin conjugating enzyme E2 C, [RH, Score=167, Expect=4e-53]} {Mouse: ENSMUSG00000001403, Ube2c, ubiquitin-conjugating enzyme E2C, [RH, Score=164, Expect=6e-52]} {Dmel: FBgn0264848, vih, vihar, [RH, Score=176, Expect=4e-57]} {Celegans: WBGene00006708, ubc-13, Ubiquitin-conjugating enzyme E2 13, [Score=125, Expect=3e-37]} {Smed: dd_Smed_v6_3846_0_1, dd_Smed_v6_3846_0_1, [Score=132, Expect=3e-40]} {RNA1509_29680} {RNA1310_30716} {RNA815_6258}
14.	MligTC455_50074	118	2.45	Mlig455_009590	Neo: - Age: Up-Down-Up Region-enriched R5: 2.555/0.02759	VPS8	0.951	-	-	-	-	-	0.951	Mlig455_009590 {REF} {Length: 5190} {Pfam: Golgi CORVET complex core vacuolar protein 8 [PF12816.9, score=98.4]} {Human: ENSG00000156931, VPS8, VPS8, CORVET complex subunit, [Score=468, Expect=1e-140]} {Mouse: ENSMUSG00000033653, Vps8, VPS8 CORVET complex subunit, [Score=483, Expect=3e-146]} {Dmel: FBgn0035704, Vps8, Vacuolar protein sorting 8, [Score=286, Expect=6e-79]} {Celegans: WBGene00015646, mlt-10, [Score=167, Expect=2e-42]} {Smed: dd_Smed_v6_9115_0_1, dd_Smed_v6_9115_0_1, [Score=403, Expect=3e-118]} {RNA1509_21552} {RNA1310_1427.2} {RNA815_661}

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