Data search
Results for MligTC455_04564
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_04564 | 742 | 15.45 | Mlig455_038816 | Neo: - Age: Down-Up-Down |
GET4 | Mlig455_038816 {REF} {Length: 3703} {TRANSSPLICED} {Pfam: Golgi to ER traffic protein 4 [PF04190.15, score=170.8]} {Human: ENSG00000239857, GET4, golgi to ER traffic protein 4, [RH, Score=201, Expect=5e-62]} {Mouse: ENSMUSG00000025858, Get4, golgi to ER traffic protein 4, [RH, Score=186, Expect=2e-56]} {Dmel: FBgn0086605, CG9853, [RH, Score=145, Expect=6e-41]} {Smed: dd_Smed_v6_7734_0_1, dd_Smed_v6_7734_0_1, [RH, Score=169, Expect=4e-50]} {RNA1509_32148, RNA1509_54341} {RNA1310_28338.1, RNA1509_54341} {RNA1509_54341, RNA815_12431} |
Cumulative graph for MligTC455_04564
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -1.293 | 4.249 | 0.25859 | 0.90670 | |
| RegionR2 | 0.175 | 4.249 | 0.67126 | 0.99909 | |
| RegionR3 | 0.02 | 4.249 | 0.95016 | 1.00000 | |
| RegionR4 | 0.821 | 4.249 | 0.02916 | 0.13321 | |
| RegionR5 | 0.439 | 4.249 | 0.13362 | 0.37290 | |
| RegionR6 | 0.22 | 4.249 | 0.51340 | 1.00000 | |
| RegionR7 | -0.256 | 4.249 | 0.56903 | 1.00000 | |
| RegionR8 | -0.126 | 4.249 | 0.80886 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -5.862 | 4.249 | 0.23274 | 0.96221 | |
| RegenerationR2 | -0.524 | 4.249 | 0.11140 | 0.52169 | |
| RegenerationR3 | -0.17 | 4.249 | 0.63394 | 0.92203 | |
| RegenerationR4 | -0.419 | 4.249 | 0.24232 | 0.69059 | |
| RegenerationR5 | -0.088 | 4.249 | 0.78239 | 0.98243 | |
| RegenerationR6 | -0.003 | 4.249 | 0.99406 | 1.00000 | |
| RegenerationBL | 0.304 | 4.249 | 0.50626 | 0.86994 | |
| RegenerationTP | -0.178 | 4.249 | 0.72518 | 1.00000 |
Genes with expression patterns similar to MligTC455_04564
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_04564 | 742 | 15.45 | Mlig455_038816 | Neo: - Age: Down-Up-Down |
GET4 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_038816 {REF} {Length: 3703} {TRANSSPLICED} {Pfam: Golgi to ER traffic protein 4 [PF04190.15, score=170.8]} {Human: ENSG00000239857, GET4, golgi to ER traffic protein 4, [RH, Score=201, Expect=5e-62]} {Mouse: ENSMUSG00000025858, Get4, golgi to ER traffic protein 4, [RH, Score=186, Expect=2e-56]} {Dmel: FBgn0086605, CG9853, [RH, Score=145, Expect=6e-41]} {Smed: dd_Smed_v6_7734_0_1, dd_Smed_v6_7734_0_1, [RH, Score=169, Expect=4e-50]} {RNA1509_32148, RNA1509_54341} {RNA1310_28338.1, RNA1509_54341} {RNA1509_54341, RNA815_12431} |
| 2. | MligTC455_04563 | 750 | 15.62 | Mlig455_038799 | Neo: - Age: - |
5.933 | 0.995 | 0.987 | 0.995 | 0.997 | 0.961 | 0.998 | Mlig455_038799 {REF} {Length: 2039} {RNA1509_24595, RNA1509_54341} {RNA1310_59579, RNA1509_24595} {RNA1509_24595, RNA815_27833.1} | |
| 3. | MligTC455_45365 | 1938 | 40.36 | Mlig455_040107 | Neo: - Age: - Region-enriched R4: 1.346/0.00006 |
GANAB | 1.776 | - | - | - | 0.951 | 0.825 | - | Mlig455_040107 {REF} {Length: 4729} {Pfam: Glycosyl hydrolases family 31 [PF01055.28, score=482.8]; Galactose mutarotase-like [PF13802.8, score=93.4]} {Human: ENSG00000089597, GANAB, glucosidase II alpha subunit, [RH, Score=800, Expect=0.0]} {Mouse: ENSMUSG00000071650, Ganab, alpha glucosidase 2 alpha neutral subunit, [RH, Score=802, Expect=0.0]} {Dmel: FBgn0027588, GCS2alpha, Glucosidase 2 alpha subunit, [RH, Score=708, Expect=0.0]} {Celegans: WBGene00018682, aagr-4, Acid Alpha Glucosidase Relate, [RH, Score=703, Expect=0.0]} {Smed: dd_Smed_v6_1707_0_1, dd_Smed_v6_1707_0_1, [RH, Score=877, Expect=0.0]} {RNA1509_3784} {RNA1310_5429} {RNA815_325} |
| 4. | MligTC455_43778 | 880 | 18.33 | Mlig455_041613 | Neo: - Age: - Region-enriched R4: 1.061/0.03397 |
WDR45 | 1.727 | - | - | - | 0.959 | 0.768 | - | Mlig455_041613 {REF} {Length: 2756} {Pfam: WD domain, G-beta repeat [PF00400.34, score=34.3]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=24.0]} {Human: ENSG00000196998, WDR45, WD repeat domain 45, [RH, Score=214, Expect=8e-66]} {Mouse: ENSMUSG00000039382, Wdr45, WD repeat domain 45, [Score=216, Expect=5e-67]} {Dmel: FBgn0037648, CG11975, [Score=163, Expect=8e-47]} {Celegans: WBGene00012641, epg-6, Ectopic P Granules, [Score=92.8, Expect=1e-20]} {Smed: dd_Smed_v6_4178_0_1, dd_Smed_v6_4178_0_1, [Score=144, Expect=2e-39]} {RNA1509_10583, RNA1509_29232} {RNA1310_6509.1, RNA1509_10583, RNA1509_29232} {RNA1509_10583, RNA1509_29232, RNA815_2908} |
| 5. | MligTC455_43779 | 878 | 18.3 | Mlig455_041635 | Neo: - Age: Up-Down-Up Region-enriched R4: 1.074/0.03063 |
WDR45 | 1.724 | - | - | - | 0.959 | 0.765 | - | Mlig455_041635 {REF} {Length: 2705} {Pfam: WD domain, G-beta repeat [PF00400.34, score=34.3]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=24.0]} {Human: ENSG00000196998, WDR45, WD repeat domain 45, [RH, Score=216, Expect=1e-66]} {Mouse: ENSMUSG00000039382, Wdr45, WD repeat domain 45, [Score=219, Expect=7e-68]} {Dmel: FBgn0037648, CG11975, [Score=162, Expect=1e-46]} {Celegans: WBGene00012641, epg-6, Ectopic P Granules, [Score=92.8, Expect=1e-20]} {Smed: dd_Smed_v6_4178_0_1, dd_Smed_v6_4178_0_1, [Score=144, Expect=2e-39]} {RNA1509_10583} {RNA1310_6509.1} {RNA815_2908} |
| 6. | MligTC455_39597 | 1580 | 32.92 | Mlig455_039163 | Neo: - Age: - |
SRSF10 | 1.715 | - | - | - | 0.957 | - | 0.758 | Mlig455_039163 {REF} {Length: 2049} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=66.5]} {Human: ENSG00000188529, SRSF10, serine and arginine rich splicing factor 10, [RH, Score=89.7, Expect=2e-20]} {Mouse: ENSMUSG00000028676, Srsf10, serine/arginine-rich splicing factor 10, [RH, Score=89.7, Expect=1e-20]; ENSMUSG00000054679, Srsf12, serine/arginine-rich splicing factor 12, [RH, Score=88.6, Expect=3e-20]} {Dmel: FBgn0263829, CG34334, [Score=64.7, Expect=2e-11]} {Celegans: WBGene00004387, rnp-4, RNA-binding protein 8A, [Score=65.1, Expect=5e-13]} {Smed: dd_Smed_v6_661_0_6, dd_Smed_v6_661_0_6, [RH, Score=102, Expect=1e-27]} {RNA1509_16371, RNA1509_1745, RNA1509_26324, RNA1509_30864} {RNA1310_13715.1, RNA1509_16371, RNA1509_26324, RNA1509_30864} {RNA1509_16371, RNA1509_26324, RNA1509_30864, RNA815_18153} |
| 7. | MligTC455_45958 | 368 | 7.67 | Mlig455_018257 | Neo: Int S/G2/M Age: - |
YOD1 | 0.969 | - | - | - | 0.969 | - | - | Mlig455_018257 {REF} {Length: 1722} {TRANSSPLICED} {Pfam: OTU-like cysteine protease [PF02338.21, score=26.8]} {Human: ENSG00000180667, YOD1, YOD1 deubiquitinase, [RH, Score=191, Expect=6e-58]} {Mouse: ENSMUSG00000046404, Yod1, YOD1 deubiquitinase, [RH, Score=188, Expect=5e-57]} {Dmel: FBgn0035593, CG4603, [RH, Score=211, Expect=5e-66]} {Smed: dd_Smed_v6_6696_0_1, dd_Smed_v6_6696_0_1, [RH, Score=194, Expect=8e-60]} {RNA1509_30029} {RNA1310_15893, RNA1509_30029} {RNA1509_30029, RNA815_6871} |
| 8. | MligTC455_22520 | 1063 | 22.15 | Mlig455_000386, Mlig455_067959 | Neo: Irradiation Age: Up-Down-Down |
TRANK1 | 0.958 | - | - | - | 0.958 | - | - | Mlig455_000386 {REF} {Length: 10595} {TRANSSPLICED} {Pfam: AAA domain [PF13245.8, score=31.4]; UvrD/REP helicase N-terminal domain [PF00580.23, score=28.5]; UvrD-like helicase C-terminal domain [PF13538.8, score=25.6]} {Human: ENSG00000168016, TRANK1, tetratricopeptide repeat and ankyrin repeat containing 1, [RH, Score=676, Expect=0.0]} {Mouse: ENSMUSG00000062296, Trank1, tetratricopeptide repeat and ankyrin repeat containing 1, [RH, Score=667, Expect=0.0]} {RNA1509_45240, RNA1509_48487} {RNA1310_139, RNA1509_45240} {RNA1509_45240, RNA815_523} Mlig455_067959 {REF} {Length: 11658} {TRANSSPLICED} {Pfam: AAA domain [PF13245.8, score=31.4]; UvrD/REP helicase N-terminal domain [PF00580.23, score=29.4]; UvrD-like helicase C-terminal domain [PF13538.8, score=25.8]} {Human: ENSG00000168016, TRANK1, tetratricopeptide repeat and ankyrin repeat containing 1, [RH, Score=679, Expect=0.0]} {Mouse: ENSMUSG00000062296, Trank1, tetratricopeptide repeat and ankyrin repeat containing 1, [RH, Score=667, Expect=0.0]} {RNA1509_26643, RNA1509_4147, RNA1509_52069} {RNA1310_139, RNA1509_26643, RNA1509_4147, RNA1509_52069} {RNA1509_26643, RNA1509_4147, RNA1509_52069, RNA815_523} |
| 9. | MligTC455_45886 | 555 | 11.55 | Mlig455_006066, Mlig455_018152, Mlig455_068050 | Neo: Int S/G2/M Age: - Region-enriched R4: 2.002/0.01764 |
CLSPN | 0.954 | - | - | - | 0.954 | - | - | Mlig455_006066 {REF} {Length: 5198} {Human: ENSG00000092853, CLSPN, claspin, [RH, Score=69.3, Expect=4e-11]} {Mouse: ENSMUSG00000042489, Clspn, claspin, [RH, Score=64.3, Expect=9e-10]} {Celegans: WBGene00009127, clsp-1, CLaSPin homolog, [Score=50.4, Expect=8e-06]} {Smed: dd_Smed_v6_7575_0_1, dd_Smed_v6_7575_0_1, [RH, Score=55.8, Expect=8e-08]} {RNA1509_18102} {RNA1310_3790.1} {RNA815_2284.1} Mlig455_018152 {REF} {Length: 1976} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=188.5]} {Mouse: ENSMUSG00000028008, Asic5, acid-sensing (proton-gated) ion channel family member 5, [Score=75.1, Expect=1e-13]} {Celegans: WBGene00006832, unc-105, Degenerin-like protein unc-105, [Score=68.2, Expect=1e-11]} {Smed: dd_Smed_v6_17245_0_1, dd_Smed_v6_17245_0_1, [Score=94.4, Expect=4e-20]} Mlig455_068050 {REF} {Length: 5949} {TRANSSPLICED} {Human: ENSG00000092853, CLSPN, claspin, [RH, Score=68.9, Expect=5e-11]} {Mouse: ENSMUSG00000042489, Clspn, claspin, [RH, Score=64.3, Expect=8e-10]} {Smed: dd_Smed_v6_7575_0_1, dd_Smed_v6_7575_0_1, [RH, Score=55.8, Expect=8e-08]} {RNA1509_18102} {RNA1310_3790.1} {RNA815_2284.1} |
| 10. | MligTC455_30288 | 218 | 4.54 | Mlig455_023806 | Neo: - Age: Up-Down-Down |
0.95 | - | - | 0.950 | - | - | - | Mlig455_023806 {REF} {Length: 10659} {Pfam: SH3 domain [PF17902.3, score=37.2]} {Dmel: FBgn0013733, shot, short stop, [Score=57.0, Expect=1e-07]} {Smed: dd_Smed_v6_8220_0_6, dd_Smed_v6_8220_0_6, [Score=137, Expect=2e-32]} {RNA1509_19944, RNA1509_50948} {RNA1310_8914, RNA1509_19944, RNA1509_50948} {RNA1509_19944, RNA1509_50948, RNA815_7443} | |
| 11. | MligTC455_35766 | 2077 | 43.28 | Mlig455_036201 | Neo: - Age: logFC(26M/2M)=0.606 Regeneration-enriched R6: 1.830 |
HNRNPL | 0.95 | - | - | - | 0.950 | - | - | Mlig455_036201 {REF} {Length: 3072} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF13893.8, score=117.9]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=84.5]; Occluded RNA-recognition motif [PF16842.7, score=33.5]; RRM-like domain [PF11835.10, score=32.1]} {Human: ENSG00000282947, HNRNPL, heterogeneous nuclear ribonucleoprotein L, [Score=223, Expect=2e-64]; ENSG00000104824, HNRNPL, heterogeneous nuclear ribonucleoprotein L, [Score=223, Expect=2e-64]} {Mouse: ENSMUSG00000015165, Hnrnpl, heterogeneous nuclear ribonucleoprotein L, [Score=224, Expect=8e-65]} {Dmel: FBgn0003435, sm, smooth, [Score=224, Expect=3e-66]} {Celegans: WBGene00016624, C44B7.2, [Score=192, Expect=2e-53]} {Smed: dd_Smed_v6_7465_0_1, dd_Smed_v6_7465_0_1, [Score=233, Expect=5e-68]} {RNA1509_2750} {RNA1310_3778.1, RNA1509_2750} {RNA1509_2750, RNA815_9958} |
| 12. | MligTC455_50175 | 681 | 14.19 | Mlig455_049630 | Neo: - Age: - |
TEX261 | 0.95 | - | - | 0.950 | - | - | - | Mlig455_049630 {REF} {Length: 2273} {TRANSSPLICED} {Pfam: Transmembrane adaptor Erv26 [PF04148.15, score=124.9]} {Human: ENSG00000144043, TEX261, testis expressed 261, [Score=150, Expect=3e-45]} {Mouse: ENSMUSG00000014748, Tex261, testis expressed gene 261, [Score=150, Expect=1e-45]} {Dmel: FBgn0034849, CG3500, [Score=119, Expect=2e-33]} {Smed: dd_Smed_v6_10021_0_1, dd_Smed_v6_10021_0_1, [Score=117, Expect=1e-32]} {RNA1509_45542} {RNA1310_11823, RNA1509_45542} {RNA1509_45542, RNA815_17541.1} |
Berezikov Lab - 2020-2021 © ERIBA