Data search
Results for MligTC455_48041
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_48041 | 684 | 14.26 | Mlig455_015166 | Neo: - Age: Down-Up-Down |
SQSTM1 | Mlig455_015166 {REF} {Length: 2821} {Pfam: UBA domain [PF16577.7, score=30.1]; Zinc finger, ZZ type [PF00569.19, score=27.1]; PB1 domain [PF00564.26, score=25.6]} {Human: ENSG00000161011, SQSTM1, sequestosome 1, [RH, Score=103, Expect=1e-23]} {Mouse: ENSMUSG00000015837, Sqstm1, sequestosome 1, [RH, Score=108, Expect=2e-25]} {Dmel: FBgn0003231, ref(2)P, refractory to sigma P, [RH, Score=59.7, Expect=3e-09]} {Celegans: WBGene00011737, sqst-1, SeQueSTosome related, [Score=52.8, Expect=3e-07]} {RNA1509_49422, RNA1509_56663} {RNA1310_11564, RNA1509_56663} {RNA1509_56663, RNA815_6596} |
Cumulative graph for MligTC455_48041
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -0.719 | 4.12 | 0.53527 | 1.00000 | |
| RegionR2 | 0.414 | 4.12 | 0.43909 | 0.82833 | |
| RegionR3 | -0.258 | 4.12 | 0.57051 | 1.00000 | |
| RegionR4 | -0.182 | 4.12 | 0.72464 | 1.00000 | |
| RegionR5 | -0.071 | 4.12 | 0.86525 | 1.00000 | |
| RegionR6 | 0.454 | 4.12 | 0.29115 | 0.88288 | |
| RegionR7 | 0.623 | 4.12 | 0.20134 | 0.80964 | |
| RegionR8 | -0.259 | 4.12 | 0.69652 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -6.505 | 4.12 | 0.15267 | 0.89519 | |
| RegenerationR2 | -0.581 | 4.12 | 0.22405 | 0.67127 | |
| RegenerationR3 | -0.278 | 4.12 | 0.60264 | 0.90917 | |
| RegenerationR4 | -0.304 | 4.12 | 0.56670 | 0.89973 | |
| RegenerationR5 | 0.198 | 4.12 | 0.69165 | 0.94844 | |
| RegenerationR6 | -1.242 | 4.12 | 0.02346 | 0.19028 | |
| RegenerationBL | -1.093 | 4.12 | 0.08815 | 0.34797 | |
| RegenerationTP | 0.838 | 4.12 | 0.13586 | 0.55321 |
Genes with expression patterns similar to MligTC455_48041
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_48041 | 684 | 14.26 | Mlig455_015166 | Neo: - Age: Down-Up-Down |
SQSTM1 | 6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_015166 {REF} {Length: 2821} {Pfam: UBA domain [PF16577.7, score=30.1]; Zinc finger, ZZ type [PF00569.19, score=27.1]; PB1 domain [PF00564.26, score=25.6]} {Human: ENSG00000161011, SQSTM1, sequestosome 1, [RH, Score=103, Expect=1e-23]} {Mouse: ENSMUSG00000015837, Sqstm1, sequestosome 1, [RH, Score=108, Expect=2e-25]} {Dmel: FBgn0003231, ref(2)P, refractory to sigma P, [RH, Score=59.7, Expect=3e-09]} {Celegans: WBGene00011737, sqst-1, SeQueSTosome related, [Score=52.8, Expect=3e-07]} {RNA1509_49422, RNA1509_56663} {RNA1310_11564, RNA1509_56663} {RNA1509_56663, RNA815_6596} |
| 2. | MligTC455_22890 | 365 | 7.6 | Mlig455_021793 | Neo: - Age: - |
ARHGAP40 | 2.379 | - | - | 0.722 | - | 0.705 | 0.952 | Mlig455_021793 {REF} {Length: 4558} {TRANSSPLICED} {Pfam: RhoGAP domain [PF00620.29, score=112.2]} {Human: ENSG00000124143, ARHGAP40, Rho GTPase activating protein 40, [RH, Score=174, Expect=6e-46]} {Mouse: ENSMUSG00000039031, Arhgap18, Rho GTPase activating protein 18, [Score=167, Expect=9e-44]} {Dmel: FBgn0039994, conu, conundrum, [Score=91.7, Expect=5e-19]} {Celegans: WBGene00015418, pac-1, GTPase-activating protein pac-1, [Score=79.7, Expect=4e-15]} {Smed: dd_Smed_v6_4507_0_1, dd_Smed_v6_4507_0_1, [Score=75.9, Expect=4e-14]} {RNA1509_9436} {RNA1310_4918, RNA1509_9436} {RNA1509_9436, RNA815_2562.1} |
| 3. | MligTC455_47023 | 707 | 14.73 | Mlig455_042180 | Neo: Int S/G2/M Age: Down-Up-Down Region-enriched R5: 1.256/0.00081 |
OTUB1 | 1.744 | - | - | - | - | 0.950 | 0.794 | Mlig455_042180 {REF} {Length: 1441} {TRANSSPLICED} {Pfam: Peptidase C65 Otubain [PF10275.11, score=234.7]; OTU-like cysteine protease [PF02338.21, score=21.1]} {Human: ENSG00000167770, OTUB1, OTU deubiquitinase, ubiquitin aldehyde binding 1, [RH, Score=222, Expect=1e-71]} {Mouse: ENSMUSG00000024767, Otub1, OTU domain, ubiquitin aldehyde binding 1, [RH, Score=218, Expect=2e-70]} {Dmel: FBgn0032214, CG4968, [RH, Score=207, Expect=2e-66]} {Celegans: WBGene00007718, otub-1, Ubiquitin thioesterase otubain-like, [RH, Score=146, Expect=2e-42]} {Smed: dd_Smed_v6_5846_0_1, dd_Smed_v6_5846_0_1, [RH, Score=221, Expect=1e-71]} {RNA1509_44199, RNA1509_7882} {RNA1310_20667.1, RNA1509_44199, RNA1509_7882} {RNA1509_44199, RNA1509_7882, RNA815_14803} |
| 4. | MligTC455_54124 | 453 | 9.43 | Mlig455_057229 | Neo: - Age: - Region-enriched R6: 2.179/0.02167 |
LAMA2 | 0.957 | - | - | - | - | 0.957 | - | Mlig455_057229 {REF} {Length: 1958} {Pfam: Tropomyosin [PF00261.22, score=76.4]; Tropomyosin like [PF12718.9, score=27.4]; Crescentin protein [PF19220.2, score=20.8]} {Human: ENSG00000196569, LAMA2, laminin subunit alpha 2, [Score=48.9, Expect=5e-06]} {Celegans: WBGene00002978, lev-11, Tropomyosin isoforms a/b/d/f, [Score=50.8, Expect=2e-07]} {Smed: dd_Smed_v6_1790_0_1, dd_Smed_v6_1790_0_1, [Score=55.5, Expect=4e-09]} {RNA1509_20736} {RNA1310_27668, RNA1509_20736} {RNA1509_20736, RNA815_13494} |
| 5. | MligTC455_25486 | 190 | 3.96 | Mlig455_026974, Mlig455_030723 | Neo: - Age: - |
GABBR1 | 0.95 | - | - | - | - | - | 0.950 | Mlig455_026974 {REF} {Length: 4525} {TRANSSPLICED} {Pfam: Receptor family ligand binding region [PF01094.30, score=189.2]; 7 transmembrane sweet-taste receptor of 3 GCPR [PF00003.24, score=169.2]; Periplasmic binding protein [PF13458.8, score=49.2]} {Human: ENSG00000237112, GABBR1, gamma-aminobutyric acid type B receptor subunit 1, [RH, Score=593, Expect=0.0]; ENSG00000206511, GABBR1, gamma-aminobutyric acid type B receptor subunit 1, [RH, Score=593, Expect=0.0]; ENSG00000237051, GABBR1, gamma-aminobutyric acid type B receptor subunit 1, [RH, Score=593, Expect=0.0]; ENSG00000206466, GABBR1, gamma-aminobutyric acid type B receptor subunit 1, [RH, Score=593, Expect=0.0]; ENSG00000204681, GABBR1, gamma-aminobutyric acid type B receptor subunit 1, [RH, Score=593, Expect=0.0]; ENSG00000232569, GABBR1, gamma-aminobutyric acid type B receptor subunit 1, [RH, Score=593, Expect=0.0]; ENSG00000232632, GABBR1, gamma-aminobutyric acid type B receptor subunit 1, [RH, Score=593, Expect=0.0]} {Mouse: ENSMUSG00000024462, Gabbr1, gamma-aminobutyric acid (GABA) B receptor, 1, [RH, Score=592, Expect=0.0]} {Dmel: FBgn0260446, GABA-B-R1, metabotropic GABA-B receptor subtype 1, [RH, Score=667, Expect=0.0]} {Celegans: WBGene00021528, gbb-1, GABA B receptor subunit; GABAB1 receptor subunit, [RH, Score=590, Expect=0.0]} {Smed: dd_Smed_v6_20665_0_1, dd_Smed_v6_20665_0_1, [RH, Score=630, Expect=0.0]} {RNA1509_21092} {RNA1310_7011.1} {RNA815_8973} Mlig455_030723 {REF} {Length: 1229} {TRANSSPLICED} {Pfam: Receptor family ligand binding region [PF01094.30, score=73.2]; Periplasmic binding protein [PF13458.8, score=19.1]} {Human: ENSG00000237051, GABBR1, gamma-aminobutyric acid type B receptor subunit 1, [Score=181, Expect=3e-51]; ENSG00000206466, GABBR1, gamma-aminobutyric acid type B receptor subunit 1, [Score=180, Expect=2e-52]; ENSG00000232569, GABBR1, gamma-aminobutyric acid type B receptor subunit 1, [Score=180, Expect=2e-52]; ENSG00000237112, GABBR1, gamma-aminobutyric acid type B receptor subunit 1, [Score=180, Expect=2e-52]; ENSG00000204681, GABBR1, gamma-aminobutyric acid type B receptor subunit 1, [Score=180, Expect=2e-52]; ENSG00000232632, GABBR1, gamma-aminobutyric acid type B receptor subunit 1, [Score=180, Expect=2e-52]; ENSG00000206511, GABBR1, gamma-aminobutyric acid type B receptor subunit 1, [Score=180, Expect=2e-52]} {Mouse: ENSMUSG00000024462, Gabbr1, gamma-aminobutyric acid (GABA) B receptor, 1, [Score=181, Expect=1e-51]} {Dmel: FBgn0260446, GABA-B-R1, metabotropic GABA-B receptor subtype 1, [Score=173, Expect=4e-49]} {Celegans: WBGene00021528, gbb-1, GABA B receptor subunit; GABAB1 receptor subunit, [Score=172, Expect=2e-50]} {Smed: dd_Smed_v6_20665_0_1, dd_Smed_v6_20665_0_1, [Score=194, Expect=1e-56]} {RNA1509_21092} {RNA1310_7011.1} {RNA815_8973} |
| 6. | MligTC455_48977 | 4051 | 84.39 | Mlig455_037261 | Neo: Int S/G2/M Age: logFC(26M/2M)=0.540 Region-enriched R5: 1.037/0.00266 |
SNRPF | 0.95 | - | - | - | - | 0.950 | - | Mlig455_037261 {REF} {Length: 790} {TRANSSPLICED} {Pfam: LSM domain [PF01423.24, score=76.3]; Ataxin 2 SM domain [PF14438.8, score=19.3]} {Human: ENSG00000139343, SNRPF, small nuclear ribonucleoprotein polypeptide F, [RH, Score=123, Expect=6e-38]} {Mouse: ENSMUSG00000020018, Snrpf, small nuclear ribonucleoprotein polypeptide F, [RH, Score=123, Expect=4e-38]} {Dmel: FBgn0000426, SmF, Small ribonucleoprotein particle protein SmF, [RH, Score=122, Expect=6e-38]} {Celegans: WBGene00004918, snr-5, Probable small nuclear ribonucleoprotein F, [RH, Score=123, Expect=2e-38]} {Smed: dd_Smed_v6_1056_0_1, dd_Smed_v6_1056_0_1, [RH, Score=136, Expect=1e-43]} {RNA1509_17908, RNA1509_9741} {RNA1310_69914, RNA1509_17908, RNA1509_9741} {RNA1509_17908, RNA1509_9741, RNA815_25270.1} |
Berezikov Lab - 2020-2021 © ERIBA