M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_52180

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_52180 49 1.02 Mlig455_026542

Neo: -

Age: -

 Mlig455_026542 {REF} {Length: 1858} {NoTransDecoderORF} {RNA1509_47901} {RNA1310_42492.2} {RNA815_28442}

Cumulative graph for MligTC455_52180

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.686 1.188 0.99962 1.00000
RegionR2 0.341 1.188 0.73894 1.00000
RegionR3 -0.383 1.188 0.99975 1.00000
RegionR4 2.314 1.188 0.30467 0.61783
RegionR5 1.386 1.188 0.99970 1.00000
RegionR6 1.753 1.188 0.10875 0.60223
RegionR7 -1.447 1.188 0.99984 1.00000
RegionR8 -0.278 1.188 0.99983 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 6.495 1.188 0.01465 0.51131
RegenerationR2 0.981 1.188 0.70200 0.95715
RegenerationR3 2.029 1.188 0.04977 0.38688
RegenerationR4 0.725 1.188 0.42087 0.82595
RegenerationR5 1.322 1.188 0.18386 0.61404
RegenerationR6 1.486 1.188 0.25168 0.60128
RegenerationBL 3.321 1.188 0.19425 0.53008
RegenerationTP 2.091 1.188 0.56968 0.94464


Genes with expression patterns similar to MligTC455_52180

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_52180 49 1.02 Mlig455_026542

Neo: -

Age: -

 3 - - 1.000 1.000 1.000 - Mlig455_026542 {REF} {Length: 1858} {NoTransDecoderORF} {RNA1509_47901} {RNA1310_42492.2} {RNA815_28442}
2. MligTC455_20335 30 0.62 Mlig455_003579

Neo: -

Age: -

 1.891 - - 0.995 - 0.896 - Mlig455_003579 {REF} {Length: 3608} {RNA1310_50785} {RNA815_44116}
3. MligTC455_06102 9 0.19 Mlig455_016363

Neo: -

Age: -

 0.995 - - 0.995 - - - Mlig455_016363 {REF} {Length: 711} {NoTransDecoderORF} {RNA1310_76160} {RNA815_19899}
4. MligTC455_09214 128 2.66 Mlig455_017737

Neo: -

Age: Up-Down-Down

 0.995 - - 0.995 - - - Mlig455_017737 {REF} {Length: 2110} {Pfam: RNase H [PF00075.26, score=54.5]; Reverse transcriptase-like [PF13456.8, score=23.8]} {RNA1509_50041} {RNA1310_12742} {RNA815_252.1}
5. MligTC455_14505 77 1.61 Mlig455_049200

Neo: -

Age: -

Region-enriched R2: 7.035/0.00040

 HEY2 0.995 - - 0.995 - - - Mlig455_049200 {REF} {Length: 1539} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=64.5]; Hairy Orange [PF07527.15, score=40.4]} {Human: ENSG00000135547, HEY2, hes related family bHLH transcription factor with YRPW motif 2, [Score=133, Expect=3e-36]; ENSG00000164683, HEY1, hes related family bHLH transcription factor with YRPW motif 1, [Score=132, Expect=4e-37]; ENSG00000163909, HEYL, hes related family bHLH transcription factor with YRPW motif-like, [Score=127, Expect=5e-34]} {Mouse: ENSMUSG00000019789, Hey2, hairy/enhancer-of-split related with YRPW motif 2, [Score=135, Expect=6e-37]; ENSMUSG00000040289, Hey1, hairy/enhancer-of-split related with YRPW motif 1, [Score=130, Expect=3e-35]} {Dmel: FBgn0027788, Hey, Hairy/E(spl)-related with YRPW motif, [Score=106, Expect=7e-26]} {Celegans: WBGene00003008, lin-22, Lin-22, [Score=48.1, Expect=1e-06]} {Smed: dd_Smed_v6_22479_0_1, dd_Smed_v6_22479_0_1, [Score=90.5, Expect=1e-20]} {RNA1310_79462} {RNA815_41474}
6. MligTC455_27535 13 0.27 Mlig455_048809

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=1.142

 PPP1R16B 0.995 - - 0.995 - - - Mlig455_048809 {REF} {Length: 2464} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=99.6]; Ankyrin repeat [PF00023.32, score=86.5]; Ankyrin repeats (many copies) [PF13637.8, score=86.4]; Ankyrin repeats (many copies) [PF13857.8, score=75.5]; Ankyrin repeat [PF13606.8, score=75.2]} {Human: ENSG00000101445, PPP1R16B, protein phosphatase 1 regulatory subunit 16B, [Score=286, Expect=1e-88]} {Mouse: ENSMUSG00000037754, Ppp1r16b, protein phosphatase 1, regulatory subunit 16B, [Score=280, Expect=9e-87]; ENSMUSG00000033819, Ppp1r16a, protein phosphatase 1, regulatory subunit 16A, [Score=278, Expect=2e-86]} {Dmel: FBgn0036801, MYPT-75D, [Score=291, Expect=2e-90]} {Celegans: WBGene00001582, gfi-2, GEI-4 (Four) Interacting protein, [Score=228, Expect=7e-68]} {Smed: dd_Smed_v6_5941_0_2, dd_Smed_v6_5941_0_2, [Score=311, Expect=4e-99]} {RNA1310_118235}
7. MligTC455_34000 7 0.15 Mlig455_065873

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.595

 0.995 - - 0.995 - - - Mlig455_065873 {REF} {Length: 4538} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=234.9]; Ankyrin repeats (many copies) [PF13637.8, score=196.7]; Ankyrin repeats (many copies) [PF13857.8, score=102.7]; Ankyrin repeat [PF13606.8, score=88.4]; Family of unknown function (DUF6189) [PF19688.1, score=70.7]; Phage protein GP46 [PF07409.14, score=58.0]; 3,4-dihydroxy-2-butanone 4-phosphate synthase [PF00926.21, score=53.5]; Ankyrin repeat [PF00023.32, score=35.4]} {Celegans: WBGene00006616, trp-4, TRP (Transient receptor potential) channel family, [Score=63.2, Expect=9e-10]} {Smed: dd_Smed_v6_14207_0_1, dd_Smed_v6_14207_0_1, [Score=51.6, Expect=3e-06]} {RNA1509_39348, RNA1509_57845} {RNA1310_21309.1, RNA1509_57845} {RNA1509_57845, RNA815_2397.1}
8. MligTC455_51122 24 0.51 Mlig455_018126

Neo: -

Age: -

 0.995 - - 0.995 - - - Mlig455_018126 {REF} {Length: 1085} {RNA1509_54792} {RNA1310_88282}
9. MligTC455_51662 15 0.31 Mlig455_012481

Neo: -

Age: -

 0.995 - - 0.995 - - - Mlig455_012481 {REF} {Length: 1671} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=53.7]} {Dmel: FBgn0000037, mAChR-A, muscarinic Acetylcholine Receptor, A-type, [Score=51.2, Expect=8e-07]} {Smed: dd_Smed_v6_25466_0_1, dd_Smed_v6_25466_0_1, [Score=47.4, Expect=8e-06]} {RNA1310_90421}
10. MligTC455_09000 8 0.17 Mlig455_035922

Neo: -

Age: -

 0.992 - - 0.992 - - - Mlig455_035922 {REF} {Length: 1657} {RNA1310_49348} {RNA815_52779}
11. MligTC455_14371 14 0.28 Mlig455_048246

Neo: -

Age: -

 0.992 - - 0.992 - - - Mlig455_048246 {REF} {Length: 1448} {Pfam: Sulfotransferase domain [PF19798.1, score=52.9]} {RNA1310_42847} {RNA815_35707}
12. MligTC455_18515 24 0.5 Mlig455_008323

Neo: -

Age: -

 FARP2 0.992 - - 0.992 - - - Mlig455_008323 {REF} {Length: 4459} {TRANSSPLICED} {Pfam: FERM C-terminal PH-like domain [PF09380.12, score=79.0]; FERM N-terminal domain [PF09379.12, score=61.5]; FERM central domain [PF00373.20, score=47.5]; FERM adjacent (FA) [PF08736.13, score=34.0]} {Human: ENSG00000006607, FARP2, FERM, ARH/RhoGEF and pleckstrin domain protein 2, [RH, Score=326, Expect=5e-99]; ENSG00000152767, FARP1, FERM, ARH/RhoGEF and pleckstrin domain protein 1, [RH, Score=317, Expect=3e-94]} {Mouse: ENSMUSG00000034066, Farp2, FERM, RhoGEF and pleckstrin domain protein 2, [RH, Score=330, Expect=3e-99]} {Dmel: FBgn0265082, Cdep, Chondrocyte-derived ezrin-like domain containing protein, [Score=367, Expect=1e-117]} {Celegans: WBGene00001490, frm-3, FERM domain (Protein4.1-ezrin-radixin-moesin) family, [Score=350, Expect=4e-104]} {Smed: dd_Smed_v6_5600_0_1, dd_Smed_v6_5600_0_1, [Score=433, Expect=5e-131]} {RNA1509_50345} {RNA1310_4844, RNA1509_50345} {RNA1509_50345, RNA815_16713}
13. MligTC455_37489 38 0.8 Mlig455_063956

Neo: -

Age: -

 0.992 - - 0.992 - - - Mlig455_063956 {REF} {Length: 4044} {RNA1310_69299} {RNA815_47623}
14. MligTC455_25805 30 0.63 Mlig455_044209

Neo: -

Age: -

 0.99 - - 0.990 - - - Mlig455_044209 {REF} {Length: 5863} {RNA1509_55535} {RNA1310_78838.1} {RNA815_24119.1}
15. MligTC455_37176 16 0.34 Mlig455_066756

Neo: -

Age: -

 0.988 - - 0.988 - - - Mlig455_066756 {REF} {Length: 339} {RNA1509_42914} {RNA1310_99471} {RNA815_64986}
16. MligTC455_16785 99 2.06 Mlig455_061289, Mlig455_061323, Mlig455_062675

Neo: -

Age: -

 0.984 - - 0.984 - - -

Mlig455_061289 {REF} {Length: 2624} {RNA1509_55425} {RNA1310_21283, RNA1509_55425} {RNA1509_55425, RNA815_20966}

Mlig455_061323 {REF} {Length: 2546} {RNA1509_55425} {RNA1310_21283} {RNA815_20966}

Mlig455_062675 {REF} {Length: 2625} {RNA1509_55425} {RNA1310_21283} {RNA815_20966}
17. MligTC455_10481 52 1.09 Mlig455_026389, Mlig455_052615, Mlig455_052659

Neo: -

Age: -

 0.982 - - 0.982 - - -

Mlig455_026389 {REF} {Length: 635} {Pfam: Sleepless protein [PF17064.7, score=21.1]} {Smed: dd_Smed_v6_16907_0_2, dd_Smed_v6_16907_0_2, [Score=78.6, Expect=8e-19]} {RNA1310_62382}

Mlig455_052615 {REF} {Length: 1127} {Pfam: Sleepless protein [PF17064.7, score=23.5]} {Smed: dd_Smed_v6_16907_0_2, dd_Smed_v6_16907_0_2, [Score=78.6, Expect=9e-19]} {RNA1310_62382} {RNA815_64157}

Mlig455_052659 {REF} {Length: 533} {Pfam: Sleepless protein [PF17064.7, score=23.5]} {Smed: dd_Smed_v6_16907_0_2, dd_Smed_v6_16907_0_2, [Score=78.6, Expect=9e-19]} {RNA1310_62382}
18. MligTC455_29400 63 1.31 Mlig455_057781

Neo: -

Age: -

 0.979 - - 0.979 - - - Mlig455_057781 {REF} {Length: 1746} {NoTransDecoderORF} {RNA1509_44223} {RNA1310_51690} {RNA815_64986}
19. MligTC455_16133 87 1.82 Mlig455_070159

Neo: -

Age: -

 0.977 - - 0.977 - - - Mlig455_070159 {REF} {Length: 813} {Pfam: DNA polymerase processivity factor (UL42) [PF02282.18, score=22.9]} {RNA1310_115465}
20. MligTC455_06627 26 0.54 Mlig455_068129

Neo: -

Age: -

 0.973 - - 0.973 - - - Mlig455_068129 {REF} {Length: 497} {NoTransDecoderORF} {RNA1310_82453}
21. MligTC455_16175 64 1.34 Mlig455_047192

Neo: -

Age: -

 GCM1 0.973 - - 0.973 - - - Mlig455_047192 {REF} {Length: 2352} {Pfam: GCM motif protein [PF03615.17, score=223.0]} {Human: ENSG00000137270, GCM1, glial cells missing homolog 1, [RH, Score=196, Expect=4e-57]; ENSG00000124827, GCM2, glial cells missing homolog 2, [RH, Score=191, Expect=2e-54]} {Mouse: ENSMUSG00000023333, Gcm1, glial cells missing homolog 1, [RH, Score=192, Expect=1e-55]; ENSMUSG00000021362, Gcm2, glial cells missing homolog 2, [RH, Score=188, Expect=1e-53]} {Dmel: FBgn0014179, gcm, glial cells missing, [RH, Score=229, Expect=3e-69]} {Smed: dd_Smed_v6_15107_0_1, dd_Smed_v6_15107_0_1, [RH, Score=186, Expect=3e-54]} {RNA1509_58813} {RNA1310_66943} {RNA815_43872}
22. MligTC455_16858 26 0.53 Mlig455_041709

Neo: -

Age: -

 0.967 - - - 0.967 - - Mlig455_041709 {REF} {Length: 996} {NoTransDecoderORF} {RNA1310_81082}
23. MligTC455_37549 88 1.83 Mlig455_048739

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-2.657

 0.966 - - - 0.966 - - Mlig455_048739 {REF} {Length: 1455} {TRANSSPLICED} {RNA1509_32517} {RNA1310_30798.1, RNA1509_32517} {RNA1509_32517, RNA815_17198}
24. MligTC455_43009 84 1.76 Mlig455_028315

Neo: -

Age: -

 NKX1-1 0.965 - - 0.965 - - - Mlig455_028315 {REF} {Length: 3063} {Pfam: Homeodomain [PF00046.31, score=75.2]} {Human: ENSG00000235608, NKX1-1, NK1 homeobox 1, [Score=140, Expect=6e-38]; ENSG00000229544, NKX1-2, NK1 homeobox 2, [Score=134, Expect=3e-36]} {Mouse: ENSMUSG00000029112, Nkx1-1, NK1 homeobox 1, [Score=146, Expect=2e-40]} {Dmel: FBgn0002941, slou, slouch, [RH, Score=152, Expect=2e-41]} {Celegans: WBGene00000428, ceh-1, Homeobox protein ceh-1, [Score=132, Expect=9e-38]} {Smed: dd_Smed_v6_19327_0_1, dd_Smed_v6_19327_0_1, [Score=145, Expect=1e-40]} {RNA1310_40325} {RNA815_61269}
25. MligTC455_36493 43 0.89 Mlig455_070548

Neo: -

Age: -

 0.963 - - - 0.963 - - Mlig455_070548 {REF} {Length: 483} {NoTransDecoderORF} {RNA1509_34671} {RNA1310_65929} {RNA815_64882}
26. MligTC455_19759 18 0.39 Mlig455_002694, Mlig455_002710

Neo: -

Age: -

 0.962 - - 0.962 - - -

Mlig455_002694 {REF} {Length: 1408} {RNA1310_38437} {RNA815_40458}

Mlig455_002710 {REF} {Length: 1745} {RNA1310_38437} {RNA815_40458}
27. MligTC455_46286 73 1.52 Mlig455_013828

Neo: -

Age: -

 0.96 - - 0.960 - - - Mlig455_013828 {REF} {Length: 1252} {RNA815_49026}
28. MligTC455_14719 15 0.3 Mlig455_010945

Neo: -

Age: -

 0.959 - - 0.959 - - - Mlig455_010945 {REF} {Length: 2374} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=152.7]} {Smed: dd_Smed_v6_16557_0_1, dd_Smed_v6_16557_0_1, [RH, Score=206, Expect=4e-59]} {RNA1310_23517.2} {RNA815_11158}
29. MligTC455_15399 36 0.74 Mlig455_055560

Neo: -

Age: -

 0.957 - - 0.957 - - - Mlig455_055560 {REF} {Length: 1702} {RNA1509_43538} {RNA1310_53010} {RNA815_29980}
30. MligTC455_23339 286 5.96 Mlig455_004644, Mlig455_014981, Mlig455_070982

Neo: -

Age: Up-Down-Down

 0.954 - - - 0.954 - -

Mlig455_004644 {REF} {Length: 3082} {Mouse: ENSMUSG00000020396, Nefh, neurofilament, heavy polypeptide, [Score=110, Expect=2e-25]} {Dmel: FBgn0029807, CG3108, [Score=50.4, Expect=2e-06]} {RNA1509_26883} {RNA1310_785} {RNA815_4511}

Mlig455_014981 {REF} {Length: 4380} {Mouse: ENSMUSG00000020396, Nefh, neurofilament, heavy polypeptide, [Score=72.0, Expect=8e-14]} {RNA1509_26883} {RNA1310_694} {RNA815_4511}

Mlig455_070982 {REF} {Length: 2690} {RNA1509_26883} {RNA1310_785} {RNA815_4511}
31. MligTC455_37687 131 2.72 Mlig455_057270

Neo: -

Age: -

 0.953 - - 0.953 - - - Mlig455_057270 {REF} {Length: 2140} {NoTransDecoderORF} {RNA1509_41398} {RNA1310_49551} {RNA815_43706}
32. MligTC455_16760 96 2 Mlig455_039271

Neo: -

Age: Down-Up-Down

Region-enriched R2: 4.283/0.01201

 CDKL2 0.951 - - 0.951 - - - Mlig455_039271 {REF} {Length: 4664} {Pfam: Protein kinase domain [PF00069.27, score=242.6]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=123.9]; ABC1 atypical kinase-like domain [PF03109.18, score=17.9]} {Human: ENSG00000138769, CDKL2, cyclin dependent kinase like 2, [RH, Score=445, Expect=3e-150]} {Mouse: ENSMUSG00000029403, Cdkl2, cyclin-dependent kinase-like 2 (CDC2-related kinase), [RH, Score=427, Expect=3e-143]} {Dmel: FBgn0031730, CG7236, [Score=332, Expect=3e-108]} {Celegans: WBGene00012779, cdkl-1, Cyclin-Dependent Kinase-Like, [Score=337, Expect=1e-111]} {Smed: dd_Smed_v6_17162_0_1, dd_Smed_v6_17162_0_1, [RH, Score=412, Expect=2e-140]} {RNA1509_31808} {RNA1310_11068.1} {RNA815_5716}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA