M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_07314

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_07314 687 14.32 Mlig455_000525

Neo: Irradiation

Age: -

Region-enriched R5: 1.319/0.00385

 SIN3B Mlig455_000525 {REF} {Length: 4206} {TRANSSPLICED} {Pfam: C-terminal domain of Sin3a protein [PF16879.7, score=97.0]} {Human: ENSG00000127511, SIN3B, SIN3 transcription regulator family member B, [Score=186, Expect=1e-48]} {Mouse: ENSMUSG00000031622, Sin3b, transcriptional regulator, SIN3B (yeast), [Score=196, Expect=3e-52]} {Dmel: FBgn0022764, Sin3A, [Score=147, Expect=2e-36]} {Smed: dd_Smed_v6_7034_0_1, dd_Smed_v6_7034_0_1, [Score=97.4, Expect=9e-21]} {RNA1509_4899} {RNA1310_4266.2} {RNA815_1997}

Cumulative graph for MligTC455_07314

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.911 4.168 0.44202 1.00000
RegionR2 -0.039 4.168 0.94484 1.00000
RegionR3 0.056 4.168 0.89362 1.00000
RegionR4 0.362 4.168 0.45391 0.78261
RegionR5 1.319 4.168 0.00029 0.00385
RegionR6 0.03 4.168 0.94499 1.00000
RegionR7 -0.483 4.168 0.41862 1.00000
RegionR8 -0.333 4.168 0.64344 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.499 4.168 0.74495 1.00000
RegenerationR2 -0.081 4.168 0.86333 1.00000
RegenerationR3 0.144 4.168 0.77375 0.97293
RegenerationR4 0.04 4.168 0.93424 1.00000
RegenerationR5 -0.367 4.168 0.39923 0.79869
RegenerationR6 0.777 4.168 0.10764 0.40579
RegenerationBL 0.035 4.168 0.95380 1.00000
RegenerationTP -0.29 4.168 0.67415 1.00000


Genes with expression patterns similar to MligTC455_07314

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_07314 687 14.32 Mlig455_000525

Neo: Irradiation

Age: -

Region-enriched R5: 1.319/0.00385

 SIN3B 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_000525 {REF} {Length: 4206} {TRANSSPLICED} {Pfam: C-terminal domain of Sin3a protein [PF16879.7, score=97.0]} {Human: ENSG00000127511, SIN3B, SIN3 transcription regulator family member B, [Score=186, Expect=1e-48]} {Mouse: ENSMUSG00000031622, Sin3b, transcriptional regulator, SIN3B (yeast), [Score=196, Expect=3e-52]} {Dmel: FBgn0022764, Sin3A, [Score=147, Expect=2e-36]} {Smed: dd_Smed_v6_7034_0_1, dd_Smed_v6_7034_0_1, [Score=97.4, Expect=9e-21]} {RNA1509_4899} {RNA1310_4266.2} {RNA815_1997}
2. MligTC455_07315 1412 29.41 Mlig455_000426, Mlig455_024855

Neo: -

Age: -

Region-enriched R5: 1.338/0.00399

 SIN3A, SIN3B 5.988 0.999 0.999 0.999 0.996 0.996 0.999

Mlig455_000426 {REF} {Length: 2868} {Pfam: C-terminal domain of Sin3a protein [PF16879.7, score=98.6]} {Human: ENSG00000127511, SIN3B, SIN3 transcription regulator family member B, [Score=144, Expect=2e-35]; ENSG00000169375, SIN3A, SIN3 transcription regulator family member A, [Score=137, Expect=5e-33]} {Mouse: ENSMUSG00000031622, Sin3b, transcriptional regulator, SIN3B (yeast), [Score=160, Expect=2e-40]} {Dmel: FBgn0022764, Sin3A, [Score=108, Expect=4e-24]} {Smed: dd_Smed_v6_7034_0_1, dd_Smed_v6_7034_0_1, [Score=71.6, Expect=1e-12]} {RNA1509_4899} {RNA1310_3136.1} {RNA815_1997}

Mlig455_024855 {REF} {Length: 6647} {Pfam: C-terminal domain of Sin3a protein [PF16879.7, score=79.7]; Bacterial protein of unknown function (DUF937) [PF06078.13, score=19.1]} {Human: ENSG00000169375, SIN3A, SIN3 transcription regulator family member A, [Score=110, Expect=3e-25]; ENSG00000127511, SIN3B, SIN3 transcription regulator family member B, [Score=107, Expect=4e-24]} {Mouse: ENSMUSG00000031622, Sin3b, transcriptional regulator, SIN3B (yeast), [Score=141, Expect=1e-35]} {Dmel: FBgn0022764, Sin3A, [Score=107, Expect=2e-24]} {Smed: dd_Smed_v6_7034_0_1, dd_Smed_v6_7034_0_1, [Score=67.8, Expect=6e-12]} {RNA1509_56147} {RNA1310_3136.1} {RNA815_14715}
3. MligTC455_10796 711 14.82 Mlig455_044153

Neo: Int S/G2/M

Age: -

Region-enriched R5: 1.235/0.00582

 VPS72 2.608 - 0.959 - 0.823 - 0.826 Mlig455_044153 {REF} {Length: 1698} {TRANSSPLICED} {Pfam: YL1 nuclear protein [PF05764.15, score=116.5]; YL1 nuclear protein C-terminal domain [PF08265.13, score=39.3]} {Human: ENSG00000163159, VPS72, vacuolar protein sorting 72 homolog, [RH, Score=140, Expect=1e-36]} {Mouse: ENSMUSG00000008958, Vps72, vacuolar protein sorting 72, [RH, Score=134, Expect=8e-35]} {Dmel: FBgn0032321, YL-1, [RH, Score=102, Expect=1e-23]} {Smed: dd_Smed_v6_6198_0_1, dd_Smed_v6_6198_0_1, [RH, Score=171, Expect=5e-49]} {RNA1509_3049, RNA1509_56403, RNA1509_56647, RNA1509_59481} {RNA1310_18768, RNA1509_3049, RNA1509_56403, RNA1509_56647, RNA1509_59481} {RNA1509_3049, RNA1509_56403, RNA1509_56647, RNA1509_59481, RNA815_24353}
4. MligTC455_16030 613 12.76 Mlig455_027164

Neo: Irradiation

Age: -

 CDK11B 2.587 0.756 0.955 - 0.876 - - Mlig455_027164 {REF} {Length: 5608} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=214.8]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=97.0]; BTB/POZ domain [PF00651.33, score=84.5]; Kinase-like [PF14531.8, score=22.1]} {Human: ENSG00000248333, CDK11B, cyclin dependent kinase 11B, [RH, Score=513, Expect=1e-164]; ENSG00000008128, CDK11A, cyclin dependent kinase 11A, [RH, Score=507, Expect=2e-162]} {Mouse: ENSMUSG00000029062, Cdk11b, cyclin-dependent kinase 11B, [RH, Score=511, Expect=7e-164]} {Dmel: FBgn0016696, Pitslre, [RH, Score=499, Expect=2e-157]} {Celegans: WBGene00015203, cdk-11.1, Putative serine/threonine-protein kinase B0495.2, [RH, Score=427, Expect=3e-133]} {Smed: dd_Smed_v6_3540_0_3, dd_Smed_v6_3540_0_3, [RH, Score=496, Expect=1e-159]} {RNA1509_17958} {RNA1310_1290} {RNA815_5865}
5. MligTC455_39646 934 19.46 Mlig455_021914

Neo: Neoblast, stringent

Age: Down-Up-Up, logFC(26M/2M)=0.293

 SF3A3 2.582 0.745 - - 0.880 - 0.957 Mlig455_021914 {REF} {Length: 1804} {TRANSSPLICED} {Pfam: SF3a60/Prp9 C-terminal [PF11931.10, score=144.3]} {Human: ENSG00000183431, SF3A3, splicing factor 3a subunit 3, [Score=243, Expect=9e-77]} {Mouse: ENSMUSG00000028902, Sf3a3, splicing factor 3a, subunit 3, [Score=243, Expect=3e-77]} {Dmel: FBgn0014366, noi, noisette, [Score=253, Expect=9e-81]} {Celegans: WBGene00011758, T13H5.4, [Score=206, Expect=3e-63]} {Smed: dd_Smed_v6_2653_0_1, dd_Smed_v6_2653_0_1, [Score=207, Expect=3e-63]} {RNA1509_27195} {RNA1310_12410} {RNA815_13038}
6. MligTC455_27797 878 18.29 Mlig455_032097

Neo: Int S/G2/M

Age: Down-Down-Up

 HGH1 2.571 - - - 0.953 0.774 0.844 Mlig455_032097 {REF} {Length: 1661} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF383) [PF04063.16, score=61.7]; Domain of unknown function (DUF384) [PF04064.15, score=46.9]} {Human: ENSG00000235173, HGH1, HGH1 homolog, [RH, Score=107, Expect=3e-25]} {Mouse: ENSMUSG00000022554, Hgh1, HGH1 homolog, [RH, Score=100, Expect=6e-23]} {Celegans: WBGene00021900, Y54H5A.2, [Score=58.2, Expect=3e-09]} {RNA1509_20599} {RNA1310_524.1, RNA1509_20599} {RNA1509_20599, RNA815_9894.1}
7. MligTC455_39647 1875 39.07 Mlig455_021993, Mlig455_022046

Neo: -

Age: logFC(26M/2M)=0.652

 SF3A3 2.569 0.744 - - 0.867 - 0.958

Mlig455_021993 {REF} {Length: 1884} {TRANSSPLICED} {Pfam: SF3a60/Prp9 C-terminal [PF11931.10, score=183.7]; Replication stress response SDE2 C-terminal [PF13297.8, score=96.5]; Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 [PF16837.7, score=60.7]; Splicing factor SF3a60 binding domain [PF12108.10, score=28.6]} {Human: ENSG00000183431, SF3A3, splicing factor 3a subunit 3, [RH, Score=629, Expect=0.0]} {Mouse: ENSMUSG00000028902, Sf3a3, splicing factor 3a, subunit 3, [RH, Score=628, Expect=0.0]} {Dmel: FBgn0014366, noi, noisette, [RH, Score=609, Expect=0.0]} {Celegans: WBGene00011758, T13H5.4, [RH, Score=524, Expect=0.0]} {Smed: dd_Smed_v6_2653_0_1, dd_Smed_v6_2653_0_1, [RH, Score=551, Expect=0.0]} {RNA1509_27195} {RNA1310_12410} {RNA815_13038}

Mlig455_022046 {REF} {Length: 1884} {TRANSSPLICED} {Pfam: SF3a60/Prp9 C-terminal [PF11931.10, score=183.7]; Replication stress response SDE2 C-terminal [PF13297.8, score=96.5]; Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 [PF16837.7, score=60.7]; Splicing factor SF3a60 binding domain [PF12108.10, score=28.6]} {Human: ENSG00000183431, SF3A3, splicing factor 3a subunit 3, [RH, Score=629, Expect=0.0]} {Mouse: ENSMUSG00000028902, Sf3a3, splicing factor 3a, subunit 3, [RH, Score=628, Expect=0.0]} {Dmel: FBgn0014366, noi, noisette, [RH, Score=609, Expect=0.0]} {Celegans: WBGene00011758, T13H5.4, [RH, Score=524, Expect=0.0]} {Smed: dd_Smed_v6_2653_0_1, dd_Smed_v6_2653_0_1, [RH, Score=551, Expect=0.0]} {RNA1509_26009, RNA1509_27195, RNA1509_35084, RNA1509_58691, RNA1509_9315} {RNA1310_12410, RNA1509_26009, RNA1509_27195, RNA1509_35084, RNA1509_58691, RNA1509_9315} {RNA1509_26009, RNA1509_27195, RNA1509_35084, RNA1509_58691, RNA1509_9315, RNA815_13038}
8. MligTC455_09419 952 19.83 Mlig455_028591, Mlig455_028608

Neo: Int S/G2/M

Age: Down-Up-Up, logFC(26M/2M)=0.336

Region-enriched R5: 1.990/0.00000

 ENGASE, RNASEH2B 2.513 - - 0.715 0.848 - 0.950

Mlig455_028591 {REF} {Length: 1343} {TRANSSPLICED} {Pfam: Ydr279p protein triple barrel domain [PF17745.3, score=28.3]} {Human: ENSG00000136104, RNASEH2B, ribonuclease H2 subunit B, [RH, Score=67.4, Expect=3e-12]} {Mouse: ENSMUSG00000021932, Rnaseh2b, ribonuclease H2, subunit B, [RH, Score=57.4, Expect=5e-09]} {Smed: dd_Smed_v6_20152_0_1, dd_Smed_v6_20152_0_1, [RH, Score=65.9, Expect=3e-12]} {RNA1509_27969, RNA1509_35889, RNA1509_39155, RNA1509_41641, RNA1509_47130, RNA1509_53114} {RNA1310_23646.1, RNA1509_27969, RNA1509_35889, RNA1509_39155, RNA1509_41641, RNA1509_47130, RNA1509_53114} {RNA1509_27969, RNA1509_35889, RNA1509_39155, RNA1509_41641, RNA1509_47130, RNA1509_53114, RNA815_10770.1}

Mlig455_028608 {REF} {Length: 2849} {TRANSSPLICED} {Pfam: Glycosyl hydrolase family 85 [PF03644.15, score=256.7]} {Human: ENSG00000167280, ENGASE, endo-beta-N-acetylglucosaminidase, [RH, Score=208, Expect=5e-61]} {Mouse: ENSMUSG00000033857, Engase, endo-beta-N-acetylglucosaminidase, [RH, Score=196, Expect=7e-57]} {Dmel: FBgn0030839, CG5613, [RH, Score=202, Expect=1e-59]} {Celegans: WBGene00017164, eng-1, Endo-b-N-acetylGlucosaminidase; Endo-beta-N-acetylglucosaminidase, [RH, Score=186, Expect=2e-55]} {Smed: dd_Smed_v6_12165_0_3, dd_Smed_v6_12165_0_3, [RH, Score=205, Expect=2e-63]} {RNA1509_24522} {RNA1310_22368} {RNA815_10770.1}
9. MligTC455_17406 919 19.15 Mlig455_044669

Neo: -

Age: -

Region-enriched R5: 1.300/0.00008

 ZNRF2 2.48 0.763 0.766 - - - 0.951 Mlig455_044669 {REF} {Length: 2297} {Pfam: Ring finger domain [PF13639.8, score=39.0]; RING-like zinc finger [PF17123.7, score=26.3]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=24.9]; RING-type zinc-finger [PF13445.8, score=20.4]} {Human: ENSG00000180233, ZNRF2, zinc and ring finger 2, [RH, Score=145, Expect=8e-42]} {Mouse: ENSMUSG00000058446, Znrf2, zinc and ring finger 2, [RH, Score=147, Expect=8e-43]} {Dmel: FBgn0029911, CG14435, [RH, Score=145, Expect=3e-41]} {Celegans: WBGene00022115, Y71F9AL.10, [RH, Score=144, Expect=4e-42]} {Smed: dd_Smed_v6_2436_0_1, dd_Smed_v6_2436_0_1, [RH, Score=130, Expect=1e-36]} {RNA1509_37305} {RNA1310_28658, RNA1509_37305} {RNA1509_37305, RNA815_2923}
10. MligTC455_32648 733 15.26 Mlig455_010039, Mlig455_054061

Neo: Int S/G2/M

Age: -

 RNF216 1.803 - - - 0.852 - 0.951

Mlig455_010039 {REF} {Length: 3772} {TRANSSPLICED} {Human: ENSG00000011275, RNF216, ring finger protein 216, [Score=63.5, Expect=9e-10]} {Mouse: ENSMUSG00000045078, Rnf216, ring finger protein 216, [Score=64.3, Expect=3e-10]} {RNA1509_11991} {RNA1310_5179.1} {RNA815_2157.1}

Mlig455_054061 {REF} {Length: 3205} {TRANSSPLICED} {Pfam: IBR domain, a half RING-finger domain [PF01485.23, score=30.0]} {Human: ENSG00000011275, RNF216, ring finger protein 216, [RH, Score=201, Expect=3e-54]} {Mouse: ENSMUSG00000045078, Rnf216, ring finger protein 216, [RH, Score=202, Expect=6e-55]} {Dmel: FBgn0025186, ari-2, ariadne 2, [Score=66.6, Expect=4e-11]} {Celegans: WBGene00020462, T12E12.1, Potential E3 ubiquitin-protein ligase ariadne-2, [Score=70.5, Expect=1e-12]} {Smed: dd_Smed_v6_1802_0_2, dd_Smed_v6_1802_0_2, [Score=50.8, Expect=1e-06]} {RNA1509_11991} {RNA1310_5179.1} {RNA815_2157.1}
11. MligTC455_48879 626 13.03 Mlig455_063780

Neo: Int S/G2/M

Age: Up-Down-Up

 HACD3 1.779 - - - 0.820 - 0.959 Mlig455_063780 {REF} {Length: 3161} {TRANSSPLICED} {Pfam: Protein tyrosine phosphatase-like protein, PTPLA [PF04387.16, score=157.0]; CS domain [PF04969.18, score=23.1]} {Human: ENSG00000074696, HACD3, 3-hydroxyacyl-CoA dehydratase 3, [RH, Score=197, Expect=6e-59]} {Mouse: ENSMUSG00000033629, Hacd3, 3-hydroxyacyl-CoA dehydratase 3, [RH, Score=198, Expect=2e-59]} {Dmel: FBgn0032524, CG9267, [RH, Score=226, Expect=4e-70]} {Celegans: WBGene00020517, hpo-8, Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase hpo-8, [Score=90.5, Expect=7e-21]} {Smed: dd_Smed_v6_3998_0_1, dd_Smed_v6_3998_0_1, [Score=281, Expect=3e-91]} {RNA1509_11453} {RNA1310_14107.2} {RNA815_19073.1}
12. MligTC455_15666 475 9.89 Mlig455_059136

Neo: -

Age: Down-Down-Up

 FICD 1.777 - - - 0.955 - 0.822 Mlig455_059136 {REF} {Length: 2075} {TRANSSPLICED} {Pfam: Evolutionarily conserved signalling intermediate in Toll pathway [PF06239.13, score=180.7]; Fic/DOC family [PF02661.20, score=83.3]; C-terminal domain of the ECSIT protein [PF14784.8, score=42.0]; Tetratricopeptide repeat [PF07719.19, score=21.7]; Tetratricopeptide repeat [PF13432.8, score=20.3]; Tetratricopeptide repeat [PF13428.8, score=20.0]} {Human: ENSG00000198855, FICD, FIC domain containing, [RH, Score=351, Expect=6e-110]} {Mouse: ENSMUSG00000053334, Ficd, FIC domain containing, [RH, Score=341, Expect=2e-106]} {Dmel: FBgn0263278, Fic, Fic domain-containing protein, [RH, Score=333, Expect=6e-103]} {Celegans: WBGene00014004, fic-1, Adenosine monophosphate-protein transferase FICD homolog, [RH, Score=304, Expect=3e-92]} {Smed: dd_Smed_v6_7501_0_1, dd_Smed_v6_7501_0_1, [RH, Score=416, Expect=3e-135]} {RNA1509_26908} {RNA1310_13470, RNA1509_26908} {RNA1509_26908, RNA815_13748}
13. MligTC455_49633 243 5.07 Mlig455_061915

Neo: -

Age: -

 1.77 - 0.813 - - - 0.957 Mlig455_061915 {REF} {Length: 1066} {RNA1509_13767} {RNA1310_26213} {RNA815_5574.1}
14. MligTC455_44967 402 8.38 Mlig455_050720

Neo: Int S/G2/M

Age: -

 NUP133 1.716 - - - 0.745 - 0.971 Mlig455_050720 {REF} {Length: 7508} {TRANSSPLICED} {Pfam: Non-repetitive/WGA-negative nucleoporin C-terminal [PF03177.16, score=65.8]} {Human: ENSG00000069248, NUP133, nucleoporin 133, [RH, Score=152, Expect=4e-36]} {Mouse: ENSMUSG00000039509, Nup133, nucleoporin 133, [RH, Score=163, Expect=1e-39]} {Dmel: FBgn0039004, Nup133, Nucleoporin 133kD, [RH, Score=102, Expect=3e-21]} {Smed: dd_Smed_v6_5977_0_1, dd_Smed_v6_5977_0_1, [RH, Score=55.1, Expect=5e-07]} {RNA1509_31103, RNA1509_9832} {RNA1310_2306.1, RNA1509_31103, RNA1509_9832} {RNA1509_31103, RNA1509_9832, RNA815_1062}
15. MligTC455_49362 929 19.36 Mlig455_034948

Neo: Int S/G2/M

Age: -

Region-enriched R5: 2.608/0.00000
Region-enriched R4: 2.354/0.00003
Region-enriched R6: 2.038/0.00315

Regeneration-enriched TP: 4.706
Regeneration-enriched BL: 3.427

 FGFR1OP 0.976 - - - - - 0.976 Mlig455_034948 {REF} {Length: 944} {Pfam: FOP N terminal dimerisation domain [PF09398.12, score=26.5]} {Human: ENSG00000213066, FGFR1OP, FGFR1 oncogene partner, [Score=81.6, Expect=4e-18]} {Mouse: ENSMUSG00000069135, Fgfr1op, Fgfr1 oncogene partner, [Score=79.3, Expect=2e-17]} {Smed: dd_Smed_v6_5371_0_1, dd_Smed_v6_5371_0_1, [RH, Score=68.6, Expect=3e-14]} {RNA1509_35328} {RNA1310_39832.1} {RNA815_19196}
16. MligTC455_24021 1496 31.17 Mlig455_056154

Neo: -

Age: -

 CTDSP1 0.967 - - - 0.967 - - Mlig455_056154 {REF} {Length: 2790} {Pfam: NLI interacting factor-like phosphatase [PF03031.20, score=160.4]} {Human: ENSG00000144579, CTDSP1, CTD small phosphatase 1, [RH, Score=246, Expect=3e-80]} {Mouse: ENSMUSG00000026176, Ctdsp1, CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1, [RH, Score=244, Expect=1e-79]; ENSMUSG00000047409, Ctdspl, CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like, [RH, Score=236, Expect=1e-76]} {Dmel: FBgn0036556, CG5830, [RH, Score=231, Expect=7e-74]} {Celegans: WBGene00007054, scpl-1, CTD small phosphatase-like protein 1, [RH, Score=226, Expect=4e-70]} {Smed: dd_Smed_v6_8196_0_1, dd_Smed_v6_8196_0_1, [RH, Score=251, Expect=2e-77]} {RNA1509_14122, RNA1509_25608, RNA1509_49170, RNA1509_9752} {RNA1310_7374.1, RNA1509_14122, RNA1509_25608, RNA1509_49170} {RNA1509_14122, RNA1509_25608, RNA1509_49170, RNA815_2431}
17. MligTC455_49756 70 1.46 Mlig455_049321

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.704

Region-enriched R4: 4.830/0.04843

 SAMM50 0.966 - - - - - 0.966 Mlig455_049321 {REF} {Length: 2363} {TRANSSPLICED} {Pfam: Omp85 superfamily domain [PF01103.25, score=90.1]} {Human: ENSG00000100347, SAMM50, SAMM50 sorting and assembly machinery component, [Score=175, Expect=3e-49]} {Mouse: ENSMUSG00000022437, Samm50, SAMM50 sorting and assembly machinery component, [Score=175, Expect=2e-49]} {Dmel: FBgn0033989, CG7639, [Score=86.7, Expect=4e-18]} {Smed: dd_Smed_v6_4146_0_1, dd_Smed_v6_4146_0_1, [Score=126, Expect=4e-32]} {RNA1509_11061} {RNA1310_15228} {RNA815_7353}
18. MligTC455_11674 239 4.98 Mlig455_063568

Neo: -

Age: -

 0.959 - - - - - 0.959 Mlig455_063568 {REF} {Length: 3222} {TRANSSPLICED} {Pfam: F-box domain [PF00646.35, score=28.5]; F-box-like [PF12937.9, score=25.7]} {RNA1509_13155} {RNA1310_3624} {RNA815_4072}
19. MligTC455_36402 1006 20.97 Mlig455_064351

Neo: -

Age: -

 0.959 - - - 0.959 - - Mlig455_064351 {REF} {Length: 2238} {TRANSSPLICED} {RNA1509_29392, RNA1509_6010} {RNA1310_7162, RNA1509_29392, RNA1509_6010} {RNA1509_29392, RNA1509_6010, RNA815_3918}
20. MligTC455_15173 297 6.19 Mlig455_056349

Neo: -

Age: -

 GAB3 0.957 - - - 0.957 - - Mlig455_056349 {REF} {Length: 4339} {TRANSSPLICED} {Pfam: PH domain [PF00169.31, score=44.1]} {Human: ENSG00000160219, GAB3, GRB2 associated binding protein 3, [RH, Score=59.7, Expect=1e-08]; ENSG00000109458, GAB1, GRB2 associated binding protein 1, [RH, Score=58.9, Expect=2e-08]} {Mouse: ENSMUSG00000032750, Gab3, growth factor receptor bound protein 2-associated protein 3, [RH, Score=55.1, Expect=2e-07]} {Dmel: FBgn0016794, dos, daughter of sevenless, [RH, Score=56.2, Expect=7e-08]} {Smed: dd_Smed_v6_8815_0_1, dd_Smed_v6_8815_0_1, [RH, Score=50.8, Expect=2e-06]} {RNA1509_32308} {RNA1310_20098} {RNA815_10250}
21. MligTC455_08189 422 8.78 Mlig455_055754

Neo: -

Age: -

Region-enriched R5: 1.257/0.01328

 0.954 - - - - - 0.954 Mlig455_055754 {REF} {Length: 1152} {TRANSSPLICED} {RNA1509_44842} {RNA1310_31507.1, RNA1509_44842} {RNA1509_44842, RNA815_13475}
22. MligTC455_19941 222 4.62 Mlig455_045624

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.790

 RNPS1 0.954 - - - - - 0.954 Mlig455_045624 {REF} {Length: 1207} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=47.0]} {Human: ENSG00000205937, RNPS1, RNA binding protein with serine rich domain 1, [RH, Score=119, Expect=8e-32]} {Mouse: ENSMUSG00000034681, Rnps1, ribonucleic acid binding protein S1, [RH, Score=119, Expect=8e-32]} {Dmel: FBgn0037707, RnpS1, RNA-binding protein S1, [RH, Score=94.0, Expect=5e-22]} {Celegans: WBGene00004388, rnp-5, RNP (RRM RNA binding domain) containing, [RH, Score=87.8, Expect=2e-20]} {Smed: dd_Smed_v6_1431_0_1, dd_Smed_v6_1431_0_1, [RH, Score=104, Expect=5e-26]} {RNA1509_14792} {RNA1310_28374} {RNA815_13087}
23. MligTC455_22681 528 11.01 Mlig455_025576

Neo: -

Age: Down-Down-Down

 FBXL8 0.953 - - - 0.953 - - Mlig455_025576 {REF} {Length: 2321} {TRANSSPLICED} {Pfam: F-box-like [PF12937.9, score=24.9]; F-box domain [PF00646.35, score=21.8]} {Human: ENSG00000135722, FBXL8, F-box and leucine rich repeat protein 8, [RH, Score=89.0, Expect=7e-19]} {Mouse: ENSMUSG00000033313, Fbxl8, F-box and leucine-rich repeat protein 8, [RH, Score=109, Expect=5e-26]} {RNA1509_12536, RNA1509_38251} {RNA1310_7458.1, RNA1509_12536, RNA1509_38251} {RNA1509_12536, RNA1509_38251, RNA815_12183}
24. MligTC455_24022 1386 28.87 Mlig455_058748

Neo: -

Age: Down-Up-Down

 CTDSP1 0.952 - - - 0.952 - - Mlig455_058748 {REF} {Length: 2724} {Pfam: NLI interacting factor-like phosphatase [PF03031.20, score=160.5]} {Human: ENSG00000144579, CTDSP1, CTD small phosphatase 1, [RH, Score=248, Expect=5e-81]} {Mouse: ENSMUSG00000026176, Ctdsp1, CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1, [RH, Score=246, Expect=9e-81]; ENSMUSG00000047409, Ctdspl, CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like, [RH, Score=238, Expect=2e-77]} {Dmel: FBgn0036556, CG5830, [RH, Score=232, Expect=5e-74]} {Celegans: WBGene00007054, scpl-1, CTD small phosphatase-like protein 1, [RH, Score=226, Expect=3e-70]} {Smed: dd_Smed_v6_8196_0_1, dd_Smed_v6_8196_0_1, [RH, Score=251, Expect=1e-77]} {RNA1509_16095, RNA1509_9752} {RNA1310_7374.1, RNA1509_16095, RNA1509_9752} {RNA1509_16095, RNA1509_9752, RNA815_2431}
25. MligTC455_39182 567 11.81 Mlig455_061295, Mlig455_062653

Neo: Irradiation

Age: Up-Down-Down

Region-enriched R4: 2.232/0.01716

 NCAPH 0.95 - - - - - 0.950

Mlig455_061295 {REF} {Length: 3956} {Pfam: Condensin complex subunit 2 [PF05786.16, score=263.4]} {Human: ENSG00000121152, NCAPH, non-SMC condensin I complex subunit H, [Score=129, Expect=3e-30]} {Mouse: ENSMUSG00000034906, Ncaph, non-SMC condensin I complex, subunit H, [Score=132, Expect=2e-31]} {Dmel: FBgn0014127, barr, barren, [RH, Score=70.1, Expect=6e-12]} {Smed: dd_Smed_v6_8491_0_3, dd_Smed_v6_8491_0_3, [Score=158, Expect=6e-40]} {RNA1509_7623} {RNA1310_2562.1} {RNA815_8919}

Mlig455_062653 {REF} {Length: 3594} {Pfam: Condensin complex subunit 2 [PF05786.16, score=262.5]} {Human: ENSG00000121152, NCAPH, non-SMC condensin I complex subunit H, [Score=129, Expect=5e-30]} {Mouse: ENSMUSG00000034906, Ncaph, non-SMC condensin I complex, subunit H, [Score=131, Expect=3e-31]} {Dmel: FBgn0014127, barr, barren, [RH, Score=70.1, Expect=6e-12]} {Smed: dd_Smed_v6_8491_0_3, dd_Smed_v6_8491_0_3, [RH, Score=160, Expect=1e-40]} {RNA1509_7623} {RNA1310_3381, RNA1509_7623} {RNA1509_7623, RNA815_8919}
26. MligTC455_40702 209 4.36 Mlig455_030731

Neo: -

Age: -

Region-enriched R5: 2.434/0.02879

 0.95 - - - - - 0.950 Mlig455_030731 {REF} {Length: 2863} {TRANSSPLICED} {Pfam: Leucine Rich Repeat [PF00560.35, score=25.4]} {RNA1509_28290, RNA1509_34243} {RNA1310_14147, RNA1509_34243} {RNA1509_34243, RNA815_4034.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA